* installing *source* package ‘panglm’ ... ** this is package ‘panglm’ version ‘1.7.0’ ** package ‘panglm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++ (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3)’ using C++17 make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-MKL/panglm/src' g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c code_sum.cpp -o code_sum.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gmm_blocksum.cpp -o gmm_blocksum.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c irls_pooled.cpp -o irls_pooled.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c logit_irls.cpp -o logit_irls.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c negbin_irls.cpp -o negbin_irls.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random_agq.cpp -o random_agq.o random_agq.cpp: In member function ‘virtual void {anonymous}::AGQWorker::operator()(std::size_t, std::size_t)’: random_agq.cpp:235:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 235 | double u = (mode0.length() == (R_xlen_t) gstart.length() && std::isfinite(mode0[g])) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random_binomial.cpp -o random_binomial.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random_gaussian.cpp -o random_gaussian.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random_negbin.cpp -o random_negbin.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random_poisson.cpp -o random_poisson.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c threads.cpp -o threads.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c twopart_cre.cpp -o twopart_cre.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c twoway_gaussian.cpp -o twoway_gaussian.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c within_binomial.cpp -o within_binomial.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c within_gaussian.cpp -o within_gaussian.o g++ -std=gnu++17 -I"/data/localhost/ripley/R/MKL/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/data/localhost/ripley/R/test-MKL/Rcpp/include' -I'/data/localhost/ripley/R/test-MKL/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-MKL/RcppParallel/include' -I/usr/local/include -fpic -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c within_poisson.cpp -o within_poisson.o g++ -std=gnu++17 -shared -L/usr/local/lib64 -o panglm.so RcppExports.o code_sum.o gmm_blocksum.o irls_pooled.o logit_irls.o negbin_irls.o random_agq.o random_binomial.o random_gaussian.o random_negbin.o random_poisson.o threads.o twopart_cre.o twoway_gaussian.o within_binomial.o within_gaussian.o within_poisson.o -L/data/localhost/ripley/intel/oneapi/mkl/2026.2/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_sequential -lgfortran -lm -latomic_asneeded -lquadmath make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-MKL/panglm/src' make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-MKL/panglm/src' make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-MKL/panglm/src' installing to /data/localhost/ripley/R/packages/tests-MKL/panglm.Rcheck/00LOCK-panglm/00new/panglm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (panglm)