* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/nonprobsvy.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 05:15:04 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘nonprobsvy/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘nonprobsvy’ version ‘0.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nonprobsvy’ can be installed ... [29s/26s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [16s/17s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘spelling.R’ Running ‘tinytest.R’ [10s/11s] [11s/11s] ERROR Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE)) { + full_tests <- identical(tolower(Sys.getenv("NONPROBSVY_FULL_TESTS")), "true") + + if (full_tests) { + tinytest::test_package("nonprobsvy") + } else { + message( + "Running the CRAN-fast tinytest subset. ", + "Set NONPROBSVY_FULL_TESTS=true to run the full suite." + ) + fast_tests <- c( + "test_check_balance", + "test_controls", + "test_ipw_stability", + "test_ipw_mle_variance_formulas", + "test_make_outcomes", + "test_methods", + "test_mi", + "test_mi_known_n", + "test_mi_methods", + "test_nn_cache", + "test_nonprob", + "test_nonprob_unit_level", + "test_pmm_k_choice", + "test_rcpp_cv" + ) + tinytest::test_package( + "nonprobsvy", + pattern = paste0("^(", paste(fast_tests, collapse = "|"), ")\\.R$") + ) + } + } Running the CRAN-fast tinytest subset. Set NONPROBSVY_FULL_TESTS=true to run the full suite. Loading required package: survey Loading required package: grid Loading required package: Matrix Loading required package: survival Attaching package: 'survey' The following object is masked from 'package:graphics': dotchart test_check_balance.R.......... 0 tests test_check_balance.R.......... 1 tests OK test_check_balance.R.......... 2 tests OK test_check_balance.R.......... 3 tests OK test_check_balance.R.......... 4 tests OK test_check_balance.R.......... 5 tests OK test_check_balance.R.......... 6 tests OK test_check_balance.R.......... 7 tests OK test_check_balance.R.......... 8 tests OK test_check_balance.R.......... 9 tests OK test_check_balance.R.......... 10 tests OK test_check_balance.R.......... 11 tests OK test_check_balance.R.......... 12 tests OK test_check_balance.R.......... 13 tests OK test_check_balance.R.......... 14 tests OK test_check_balance.R.......... 14 tests OK test_check_balance.R.......... 15 tests OK test_check_balance.R.......... 16 tests OK test_check_balance.R.......... 17 tests OK test_check_balance.R.......... 18 tests OK test_check_balance.R.......... 19 tests OK test_check_balance.R.......... 20 tests OK test_check_balance.R.......... 21 tests OK test_check_balance.R.......... 22 tests OK test_check_balance.R.......... 22 tests OK test_check_balance.R.......... 23 tests OK test_check_balance.R.......... 23 tests OK test_check_balance.R.......... 24 tests OK test_check_balance.R.......... 25 tests OK test_check_balance.R.......... 26 tests OK test_check_balance.R.......... 27 tests OK 3.9s test_controls.R............... 0 tests test_controls.R............... 1 tests OK test_controls.R............... 2 tests OK test_controls.R............... 3 tests OK test_controls.R............... 4 tests OK test_controls.R............... 5 tests OK test_controls.R............... 6 tests OK test_controls.R............... 7 tests OK test_controls.R............... 8 tests OK 98ms test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 0 tests test_ipw_mle_variance_formulas.R 15 tests OK test_ipw_mle_variance_formulas.R 33 tests OK 0.1s test_ipw_stability.R.......... 0 tests test_ipw_stability.R.......... 0 tests test_ipw_stability.R.......... 0 tests test_ipw_stability.R.......... 24 tests OK test_ipw_stability.R.......... 24 tests OK test_ipw_stability.R.......... 24 tests OK test_ipw_stability.R.......... 25 tests OK 4ms test_make_outcomes.R.......... 0 tests test_make_outcomes.R.......... 1 tests OK test_make_outcomes.R.......... 2 tests OK test_make_outcomes.R.......... 3 tests OK test_make_outcomes.R.......... 4 tests OK test_make_outcomes.R.......... 5 tests OK test_make_outcomes.R.......... 6 tests OK test_make_outcomes.R.......... 6 tests OK test_make_outcomes.R.......... 6 tests OK test_make_outcomes.R.......... 7 tests OK 3ms test_methods.R................ 0 tests test_methods.R................ 0 tests test_methods.R................ 0 tests test_methods.R................ 0 tests test_methods.R................ 0 tests test_methods.R................ 1 tests OK test_methods.R................ 2 tests OK test_methods.R................ 3 tests OK test_methods.R................ 4 tests OK test_methods.R................ 5 tests OK Calculating standard errors... test_methods.R................ 6 tests OK Calculating standard errors... test_methods.R................ 7 tests OK test_methods.R................ 8 tests OK test_methods.R................ 8 tests OK test_methods.R................ 8 tests OK test_methods.R................ 9 tests OK test_methods.R................ 10 tests OK 2.2s test_mi.R..................... 0 tests test_mi.R..................... 1 tests OK test_mi.R..................... 2 tests OK test_mi.R..................... 2 tests OK test_mi.R..................... 3 tests OK test_mi.R..................... 4 tests OK test_mi.R..................... 5 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 6 tests OK test_mi.R..................... 15 tests OK test_mi.R..................... 24 tests OK test_mi.R..................... 33 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 42 tests OK test_mi.R..................... 43 tests OK test_mi.R..................... 44 tests OK 0.6s test_mi_known_n.R............. 0 tests test_mi_known_n.R............. 0 tests test_mi_known_n.R............. 0 tests test_mi_known_n.R............. 0 tests test_mi_known_n.R............. 0 tests test_mi_known_n.R............. 1 tests OK test_mi_known_n.R............. 2 tests OK test_mi_known_n.R............. 3 tests OK test_mi_known_n.R............. 3 tests OK test_mi_known_n.R............. 3 tests OK test_mi_known_n.R............. 3 tests OK test_mi_known_n.R............. 4 tests OK test_mi_known_n.R............. 5 tests OK test_mi_known_n.R............. 6 tests OK 0.1s test_mi_methods.R............. 0 tests test_mi_methods.R............. 1 tests OK test_mi_methods.R............. 2 tests OK test_mi_methods.R............. 3 tests OK 0.1s Tracing function "nn2" in package "namespace:RANN" Untracing function "nn2" in package "namespace:RANN" test_nn_cache.R............... 2 tests OK 0.2s test_nonprob.R................ 0 tests test_nonprob.R................ 1 tests OK test_nonprob.R................ 2 tests OK test_nonprob.R................ 3 tests OK test_nonprob.R................ 4 tests OK test_nonprob.R................ 5 tests OK test_nonprob.R................ 6 tests OK test_nonprob.R................ 7 tests OK 0.1s test_nonprob_unit_level.R..... 0 tests test_nonprob_unit_level.R..... 1 tests OK test_nonprob_unit_level.R..... 2 tests OK test_nonprob_unit_level.R..... 3 tests OK test_nonprob_unit_level.R..... 4 tests OK test_nonprob_unit_level.R..... 5 tests OK test_nonprob_unit_level.R..... 6 tests OK test_nonprob_unit_level.R..... 7 tests OK test_nonprob_unit_level.R..... 8 tests OK test_nonprob_unit_level.R..... 9 tests OK test_nonprob_unit_level.R..... 10 tests OK test_nonprob_unit_level.R..... 11 tests OK test_nonprob_unit_level.R..... 11 tests OK test_nonprob_unit_level.R..... 12 tests OK test_nonprob_unit_level.R..... 13 tests OK test_nonprob_unit_level.R..... 13 tests OK test_nonprob_unit_level.R..... 13 tests OK test_nonprob_unit_level.R..... 14 tests OK test_nonprob_unit_level.R..... 14 tests OK test_nonprob_unit_level.R..... 14 tests OK test_nonprob_unit_level.R..... 15 tests OK test_nonprob_unit_level.R..... 15 tests OK test_nonprob_unit_level.R..... 15 tests OK test_nonprob_unit_level.R..... 16 tests OK test_nonprob_unit_level.R..... 17 tests OK 0.5s test_pmm_k_choice.R........... 0 tests test_pmm_k_choice.R........... 0 tests test_pmm_k_choice.R........... 0 tests test_pmm_k_choice.R........... 0 tests test_pmm_k_choice.R........... 0 tests test_pmm_k_choice.R........... 1 tests OK test_pmm_k_choice.R........... 2 tests OK test_pmm_k_choice.R........... 3 tests OK test_pmm_k_choice.R........... 4 tests OK test_pmm_k_choice.R........... 5 tests OK test_pmm_k_choice.R........... 5 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 6 tests OK The `nn_exact_se=TRUE` option used. Remember to set the seed for reproducibility. test_pmm_k_choice.R........... 6 tests OK test_pmm_k_choice.R........... 7 tests OK test_pmm_k_choice.R........... 7 tests OK test_pmm_k_choice.R........... 7 tests OK test_pmm_k_choice.R........... 7 tests OK test_pmm_k_choice.R........... 7 tests OK test_pmm_k_choice.R........... 8 tests OK 0.6s test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 0 tests test_rcpp_cv.R................ 1 tests OK test_rcpp_cv.R................ 2 tests OK test_rcpp_cv.R................ 3 tests OK test_rcpp_cv.R................ 4 tests OK test_rcpp_cv.R................ 4 tests OK test_rcpp_cv.R................ 4 tests OK test_rcpp_cv.R................ 4 tests OK test_rcpp_cv.R................ 64 tests 3 fails 0.2s ----- FAILED[data]: test_rcpp_cv.R<127--171> call| expect_true(identical(cv_first$lambda, cv_second$lambda)) diff| Expected TRUE, got FALSE ----- FAILED[data]: test_rcpp_cv.R<127--171> call| expect_true(identical(cv_first$theta_est, cv_second$theta_est)) diff| Expected TRUE, got FALSE ----- FAILED[data]: test_rcpp_cv.R<127--171> call| expect_true(identical(cv_first$cv_error, cv_second$cv_error)) diff| Expected TRUE, got FALSE Error: 3 out of 261 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [85s/88s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/nonprobsvy.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:20.16, 179.94 + 13.15