* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/multipleOutcomes.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 04:43:24 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘multipleOutcomes/DESCRIPTION’ ... OK
* this is package ‘multipleOutcomes’ version ‘0.18.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multipleOutcomes’ can be installed ... [15s/17s] OK
* used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* used Fortran compiler: ‘GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [21s/22s]
 [21s/22s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(multipleOutcomes)
  > 
  > test_check("multipleOutcomes")
  Saving _problems/test-inplace-formula-59.R
  Saving _problems/test-inplace-formula-59.R
  Saving _problems/test-inplace-formula-59.R
  [ FAIL 3 | WARN 4 | SKIP 18 | PASS 358 ]
  
  ══ Skipped tests (18) ══════════════════════════════════════════════════════════
  • On CRAN (18): 'test-mc-covariance.R:14:3', 'test-mc-covariance.R:34:3',
    'test-mc-covariance.R:55:3', 'test-mc-covariance.R:75:3',
    'test-mc-covariance.R:108:3', 'test-mc-covariance.R:130:3',
    'test-mc-cross-engine.R:27:3', 'test-mc-cross-engine.R:50:3',
    'test-mc-cross-engine.R:73:3', 'test-mc-cross-engine.R:102:3',
    'test-mc-cross-engine.R:135:3', 'test-mc-pated-cross.R:30:3',
    'test-mc-pated-cross.R:62:3', 'test-netbenefit-vs-fit_win_ratio.R:82:3',
    'test-netbenefit-vs-fit_win_ratio.R:97:3',
    'test-netbenefit-vs-fit_win_ratio.R:117:3',
    'test-netbenefit-vs-fit_win_ratio.R:135:3', 'test-winratio.R:336:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-inplace-formula.R:59:3'): baseline: 3 prognostic specs with mixed in-place transformations ──
  Expected `a$estimate[ord_a]` to equal `b$estimate[ord_b]`.
  Differences:
  2/5 mismatches (average diff: 4.37e-16)
  [3] -0.1046 - -0.1046 ==  2.50e-16
  [4] -0.0663 - -0.0663 == -6.25e-16
  Backtrace:
      ▆
   1. └─multipleOutcomes (local) expect_pated_identical(fit_pre, fit_inp) at test-inplace-formula.R:59:3
   2.   └─testthat::expect_equal(...) at test-inplace-formula.R:31:3
  ── Failure ('test-inplace-formula.R:59:3'): baseline: 3 prognostic specs with mixed in-place transformations ──
  Expected `a$stderr[ord_a]` to equal `b$stderr[ord_b]`.
  Differences:
  2/5 mismatches (average diff: 5.55e-17)
  [3] 0.127 - 0.127 == -5.55e-17
  [4] 0.122 - 0.122 ==  5.55e-17
  Backtrace:
      ▆
   1. └─multipleOutcomes (local) expect_pated_identical(fit_pre, fit_inp) at test-inplace-formula.R:59:3
   2.   └─testthat::expect_equal(a$stderr[ord_a], b$stderr[ord_b], tolerance = tol) at test-inplace-formula.R:32:3
  ── Failure ('test-inplace-formula.R:59:3'): baseline: 3 prognostic specs with mixed in-place transformations ──
  Expected `a$pvalue[ord_a]` to equal `b$pvalue[ord_b]`.
  Differences:
  2/5 mismatches (average diff: 2.19e-15)
  [3] 0.409 - 0.409 ==  9.44e-16
  [4] 0.587 - 0.587 == -3.44e-15
  Backtrace:
      ▆
   1. └─multipleOutcomes (local) expect_pated_identical(fit_pre, fit_inp) at test-inplace-formula.R:59:3
   2.   └─testthat::expect_equal(a$pvalue[ord_a], b$pvalue[ord_b], tolerance = tol) at test-inplace-formula.R:33:3
  
  [ FAIL 3 | WARN 4 | SKIP 18 | PASS 358 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/multipleOutcomes.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:59.17, 96.17 + 10.13