* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/multilevelMatching.Rcheck’
* using R Under development (unstable) (2019-12-29 r77627)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘multilevelMatching/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘multilevelMatching’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multilevelMatching’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/24s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [11s/28s]
 [11s/29s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(multilevelMatching)
  > 
  > suppressWarnings(RNGversion("3.5.0")) ## For backwards compatibility
  > test_check("multilevelMatching")
  ── 1. Failure: matchX returns same output as original (@test_legacy_matching_str
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 0.291)
  [1] -0.193 - 0.0793 == -0.272
  [2]  0.427 - 0.8626 == -0.436
  [3]  0.620 - 0.7834 == -0.164
  
  ── 2. Failure: matchX returns same output as original (@test_legacy_matching_str
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.0218)
  [1] 0.215 - 0.179 == 0.03570
  [2] 0.166 - 0.163 == 0.00258
  [3] 0.349 - 0.322 == 0.02718
  
  ── 3. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 1.85)
  [1]  1.877 - -0.746 ==  2.623
  [2]  0.405 -  0.561 == -0.156
  [3] -1.472 -  1.306 == -2.779
  
  ── 4. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.515)
  [1] 1.359 - 0.697 ==  0.661
  [2] 0.325 - 0.486 == -0.161
  [3] 1.431 - 0.709 ==  0.722
  
  ── 5. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit$varestimateAI2012 not equal to fit_orig$varestimateAI2012.
  3/3 mismatches (average diff: 0.308)
  [1] 0.888 - 0.434 ==  0.4535
  [2] 0.204 - 0.229 == -0.0244
  [3] 0.868 - 0.423 ==  0.4454
  
  ── 6. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 2.35)
  [1]  1.877 - -1.06 ==  2.933
  [2]  0.405 -  1.00 == -0.597
  [3] -1.472 -  2.06 == -3.530
  
  ── 7. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.429)
  [1] 1.359 - 0.792 ==  0.567
  [2] 0.325 - 0.446 == -0.121
  [3] 1.431 - 0.831 ==  0.600
  
  ── 8. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit2$varestimateAI2012 not equal to fit2_orig$varestimateAI2012.
  3/3 mismatches (average diff: 0.271)
  [1] 0.888 - 0.488 ==  0.39993
  [2] 0.204 - 0.210 == -0.00605
  [3] 0.868 - 0.462 ==  0.40568
  
  ── 9. Failure: GPSMatch on MLR returns same output as original (@test_legacy_mat
  fit2$analysisidx not equal to fit2_orig$analysisidx.
  Lengths differ: 300 is not 298
  
  ── 10. Failure: GPSMatch on POLR returns same output as original (@test_legacy_m
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 1.41)
  [1]  0.183 - -0.730 ==  0.913
  [2] -0.825 -  0.371 == -1.196
  [3] -1.008 -  1.102 == -2.109
  
  ── 11. Failure: GPSMatch on POLR returns same output as original (@test_legacy_m
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.13)
  [1] 0.839 - 0.726 ==  0.1127
  [2] 0.406 - 0.597 == -0.1904
  [3] 0.888 - 0.974 == -0.0866
  
  ── 12. Failure: GPSMatch on POLR returns same output as original (@test_legacy_m
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 1.48)
  [1]  0.183 - -0.769 ==  0.952
  [2] -0.825 -  0.445 == -1.270
  [3] -1.008 -  1.214 == -2.222
  
  ── 13. Failure: GPSMatch on POLR returns same output as original (@test_legacy_m
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.0641)
  [1] 0.839 - 0.719 ==  0.1201
  [2] 0.406 - 0.468 == -0.0622
  [3] 0.888 - 0.898 == -0.0101
  
  ── 14. Failure: GPSMatch on POLR returns same output as original (@test_legacy_m
  fit2$analysisidx not equal to fit2_orig$analysisidx.
  Lengths differ: 300 is not 298
  
  ── 15. Failure: GPSStratification on POLR returns same output as original (@test
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 0.354)
  [1]  0.0465 - -0.118 ==  0.164
  [2] -0.1027 -  0.265 == -0.367
  [3] -0.1492 -  0.382 == -0.532
  
  ── 16. Failure: GPSStratification on POLR returns same output as original (@test
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.0672)
  [1] 0.0566 - 0.13551 == -0.0789
  [2] 0.1050 - 0.00555 ==  0.0995
  [3] 0.1097 - 0.08653 ==  0.0232
  
  ── 17. Failure: GPSStratification on POLR returns same output as original (@test
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 0.448)
  [1] -0.208 - -0.408 ==  0.200
  [2] -0.096 -  0.377 == -0.473
  [3]  0.112 -  0.785 == -0.673
  
  ── 18. Failure: GPSStratification on POLR returns same output as original (@test
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.0302)
  [1] 0.0188 - 0.0121 ==  0.0067
  [2] 0.0564 - 0.0701 == -0.0137
  [3] 0.0192 - 0.0895 == -0.0703
  
  ── 19. Failure: GPSStratification on POLR returns same output as original (@test
  fit3$tauestimate not equal to fit3_orig$tauestimate.
  3/3 mismatches (average diff: 0.701)
  [1]  0.504 - -0.0698 ==  0.574
  [2]  0.087 -  0.5646 == -0.478
  [3] -0.417 -  0.6344 == -1.051
  
  ── 20. Failure: GPSStratification on POLR returns same output as original (@test
  fit3$varestimate not equal to fit3_orig$varestimate.
  3/3 mismatches (average diff: 0.14)
  [1] 0.3359 - 0.3692 == -0.0333
  [2] 0.0107 - 0.0762 == -0.0655
  [3] 0.4630 - 0.1431 ==  0.3199
  
  ── 21. Failure: matchX returns same output as original (@test_orig2_matching.R#9
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 0.291)
  [1] -0.193 - 0.0793 == -0.272
  [2]  0.427 - 0.8626 == -0.436
  [3]  0.620 - 0.7834 == -0.164
  
  ── 22. Failure: matchX returns same output as original (@test_orig2_matching.R#1
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.0218)
  [1] 0.215 - 0.179 == 0.03570
  [2] 0.166 - 0.163 == 0.00258
  [3] 0.349 - 0.322 == 0.02718
  
  ── 23. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 1.85)
  [1]  1.877 - -0.746 ==  2.623
  [2]  0.405 -  0.561 == -0.156
  [3] -1.472 -  1.306 == -2.779
  
  ── 24. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.515)
  [1] 1.359 - 0.697 ==  0.661
  [2] 0.325 - 0.486 == -0.161
  [3] 1.431 - 0.709 ==  0.722
  
  ── 25. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit$varestimateAI2012 not equal to fit_orig$varestimateAI2012.
  3/3 mismatches (average diff: 0.308)
  [1] 0.888 - 0.434 ==  0.4535
  [2] 0.204 - 0.229 == -0.0244
  [3] 0.868 - 0.423 ==  0.4454
  
  ── 26. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 2.35)
  [1]  1.877 - -1.06 ==  2.933
  [2]  0.405 -  1.00 == -0.597
  [3] -1.472 -  2.06 == -3.530
  
  ── 27. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.429)
  [1] 1.359 - 0.792 ==  0.567
  [2] 0.325 - 0.446 == -0.121
  [3] 1.431 - 0.831 ==  0.600
  
  ── 28. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit2$varestimateAI2012 not equal to fit2_orig$varestimateAI2012.
  3/3 mismatches (average diff: 0.271)
  [1] 0.888 - 0.488 ==  0.39993
  [2] 0.204 - 0.210 == -0.00605
  [3] 0.868 - 0.462 ==  0.40568
  
  ── 29. Failure: GPSMatch on MLR returns same output as original (@test_orig2_mat
  fit2$analysisidx not equal to fit2_orig$analysisidx.
  Lengths differ: 300 is not 298
  
  ── 30. Failure: GPSMatch on POLR returns same output as original (@test_orig2_ma
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 1.41)
  [1]  0.183 - -0.730 ==  0.913
  [2] -0.825 -  0.371 == -1.196
  [3] -1.008 -  1.102 == -2.109
  
  ── 31. Failure: GPSMatch on POLR returns same output as original (@test_orig2_ma
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.13)
  [1] 0.839 - 0.726 ==  0.1127
  [2] 0.406 - 0.597 == -0.1904
  [3] 0.888 - 0.974 == -0.0866
  
  ── 32. Failure: GPSMatch on POLR returns same output as original (@test_orig2_ma
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 1.48)
  [1]  0.183 - -0.769 ==  0.952
  [2] -0.825 -  0.445 == -1.270
  [3] -1.008 -  1.214 == -2.222
  
  ── 33. Failure: GPSMatch on POLR returns same output as original (@test_orig2_ma
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.0641)
  [1] 0.839 - 0.719 ==  0.1201
  [2] 0.406 - 0.468 == -0.0622
  [3] 0.888 - 0.898 == -0.0101
  
  ── 34. Failure: GPSMatch on POLR returns same output as original (@test_orig2_ma
  fit2$analysisidx not equal to fit2_orig$analysisidx.
  Lengths differ: 300 is not 298
  
  ── 35. Failure: GPSStratification on POLR returns same output as original (@test
  fit$tauestimate not equal to fit_orig$tauestimate.
  3/3 mismatches (average diff: 0.354)
  [1]  0.0465 - -0.118 ==  0.164
  [2] -0.1027 -  0.265 == -0.367
  [3] -0.1492 -  0.382 == -0.532
  
  ── 36. Failure: GPSStratification on POLR returns same output as original (@test
  fit$varestimate not equal to fit_orig$varestimate.
  3/3 mismatches (average diff: 0.0672)
  [1] 0.0566 - 0.13551 == -0.0789
  [2] 0.1050 - 0.00555 ==  0.0995
  [3] 0.1097 - 0.08653 ==  0.0232
  
  ── 37. Failure: GPSStratification on POLR returns same output as original (@test
  fit2$tauestimate not equal to fit2_orig$tauestimate.
  3/3 mismatches (average diff: 0.448)
  [1] -0.208 - -0.408 ==  0.200
  [2] -0.096 -  0.377 == -0.473
  [3]  0.112 -  0.785 == -0.673
  
  ── 38. Failure: GPSStratification on POLR returns same output as original (@test
  fit2$varestimate not equal to fit2_orig$varestimate.
  3/3 mismatches (average diff: 0.0302)
  [1] 0.0188 - 0.0121 ==  0.0067
  [2] 0.0564 - 0.0701 == -0.0137
  [3] 0.0192 - 0.0895 == -0.0703
  
  ── 39. Failure: GPSStratification on POLR returns same output as original (@test
  fit3$tauestimate not equal to fit3_orig$tauestimate.
  3/3 mismatches (average diff: 0.701)
  [1]  0.504 - -0.0698 ==  0.574
  [2]  0.087 -  0.5646 == -0.478
  [3] -0.417 -  0.6344 == -1.051
  
  ── 40. Failure: GPSStratification on POLR returns same output as original (@test
  fit3$varestimate not equal to fit3_orig$varestimate.
  3/3 mismatches (average diff: 0.14)
  [1] 0.3359 - 0.3692 == -0.0333
  [2] 0.0107 - 0.0762 == -0.0655
  [3] 0.4630 - 0.1431 ==  0.3199
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  [ OK: 203 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 40 ]
  1. Failure: matchX returns same output as original (@test_legacy_matching_stratification.R#94) 
  2. Failure: matchX returns same output as original (@test_legacy_matching_stratification.R#100) 
  3. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#174) 
  4. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#180) 
  5. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#185) 
  6. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#198) 
  7. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#204) 
  8. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#209) 
  9. Failure: GPSMatch on MLR returns same output as original (@test_legacy_matching_stratification.R#215) 
  1. ...
  
  Error: testthat unit tests failed
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [5s/12s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/multilevelMatching.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:26.76, 48.95 + 5.89