* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/msma.Rcheck’ * using R Under development (unstable) (2026-11-07 r90846) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) GNU Fortran (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-11-07 05:19:57 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘msma/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘msma’ version ‘5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘msma’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/23s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/22s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [16s/34s] [16s/34s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(msma) > test_check("msma") Saving _problems/test-v5-prediction-baseline-17.R Saving _problems/test-v5-prediction-baseline-34.R Saving _problems/test-v5-prediction-baseline-57.R Saving _problems/test-v5-prediction-baseline-91.R Saving _problems/test-v5-prediction-baseline-113.R Saving _problems/test-v5-prediction-baseline-114.R Saving _problems/test-v5-prediction-baseline-132.R Saving _problems/test-v5-prediction-baseline-133.R Saving _problems/test-v5-prediction-baseline-151.R Saving _problems/test-v5-prediction-baseline-169.R Saving _problems/test-v5-prediction-baseline-189.R Saving _problems/test-v5-prediction-fitted-16.R Saving _problems/test-v5-prediction-fitted-20.R [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • Source-tree documentation files are not available. (3): 'test-v5-prediction-documentation.R:37:5', 'test-v5-prediction-documentation.R:82:5', 'test-v5-prediction-documentation.R:160:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-v5-prediction-baseline.R:17:3'): legacy PCA prediction with scaling TRUE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276013462 - -0.079225667276013267 [2] [3] -0.789884115690939970 - -0.789884115690939526 [3] [4] 0.442155505782371061 - 0.442155505782371006 [4] [5] -0.115007809220551357 - -0.115007809220551316 [5] [6] 0.661078552168547828 - 0.661078552168547051 [6] [7] -0.502318791389847141 - -0.502318791389847030 [7] [8] -0.190689619388339143 - -0.190689619388338866 [8] [9] -0.458052745239416859 - -0.458052745239416692 [9] [10] 0.481785007943846100 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.183259765370397343 | -1.183259765370397343 [1] [2] 0.282398153698493859 - 0.282398153698493970 [2] [3] 2.115127694919400003 | 2.115127694919400003 [3] [4] -1.095298978587296634 | -1.095298978587296634 [4] [5] 0.280460782055447888 - 0.280460782055447777 [5] [6] -1.878530390585923415 - -1.878530390585923193 [6] [7] 1.217431504410357412 - 1.217431504410356968 [7] [8] 0.566088819689309353 | 0.566088819689309353 [8] [9] 1.160585334932070500 - 1.160585334932070278 [9] [10] -1.319204424486851712 - -1.319204424486851490 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:34:3'): legacy PCA prediction with scaling FALSE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.130399884531725602 - -0.130399884531725629 [1] [2] -0.162578308356472689 - -0.162578308356472218 [2] [3] -0.895494599351058018 - -0.895494599351058129 [3] [4] 0.324260603446073381 - 0.324260603446073270 [4] [5] 0.371899380690175474 | 0.371899380690175474 [5] [6] 0.069972375597097972 - 0.069972375597097874 [6] [7] -0.281724115657135510 - -0.281724115657135454 [7] [8] -1.465732087681435258 - -1.465732087681434592 [8] [9] -0.005570285708659029 - -0.005570285708658917 [9] [10] -0.995315060268985752 | -0.995315060268985752 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.378709057563207774 - -0.378709057563207441 [1] [2] -0.242961100002732244 - -0.242961100002732161 [2] [3] 1.640784472210377487 - 1.640784472210377931 [3] [4] -1.192075063031929005 | -1.192075063031929005 [4] [5] -0.455474737519725725 - -0.455474737519725670 [5] [6] 0.626015205420247800 | 0.626015205420247800 [6] [7] 0.219575583256993195 - 0.219575583256993251 [7] [8] -0.801378179166684301 - -0.801378179166683857 [8] [9] -0.528012250226710833 - -0.528012250226710611 [9] [10] 1.783021968961969073 - 1.783021968961969295 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:57:3'): legacy PLS X and Y prediction matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.523094306526273090 | -0.523094306526273090 [1] [2] -0.176422825399348310 - -0.176422825399348449 [2] [3] -0.459723170360350541 - -0.459723170360350597 [3] [4] -1.053508918204908662 - -1.053508918204908884 [4] [5] -0.567187110109685699 - -0.567187110109685477 [5] [6] 0.180976738516999164 - 0.180976738516999358 [6] [7] -0.602980222901094542 - -0.602980222901094876 [7] [8] -0.449003780772401828 - -0.449003780772401884 [8] [9] 0.421202099221769488 - 0.421202099221769433 [9] [10] 0.194288616598771557 - 0.194288616598771446 [10] ... ... ... and 38 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.311818261469395785 - 0.311818261469395508 [1] [2] 0.440586777179494071 - 0.440586777179493905 [2] [3] -0.206728141049157932 - -0.206728141049157987 [3] [4] 1.056684088763764962 - 1.056684088763764739 [4] [5] -0.668210326243252939 - -0.668210326243253494 [5] [6] -0.696245784114051358 - -0.696245784114051469 [6] [7] 0.459908995907265750 - 0.459908995907265861 [7] [8] 1.004504989394756409 | 1.004504989394756409 [8] [9] 1.004356131603070468 | 1.004356131603070468 [9] [10] -0.131624596433665475 - -0.131624596433665059 [10] ... ... ... and 6 more ... actual$Y[[1]] | expected$Y[[1]] [1] 1.2027067385672125521 - 1.2027067385672127742 [1] [2] 1.1070766833554672726 | 1.1070766833554672726 [2] [3] 0.8530828833333620187 - 0.8530828833333622407 [3] [4] -0.8641026283560168109 - -0.8641026283560166998 [4] [5] 1.0737733921132082138 - 1.0737733921132086579 [5] [6] 0.0831722611704282938 - 0.0831722611704278081 [6] [7] 0.9094390047050588954 | 0.9094390047050588954 [7] [8] 0.6426091229429059526 - 0.6426091229429060636 [8] [9] -0.3726374011876011361 | -0.3726374011876011361 [9] [10] -0.3551343297162194435 - -0.3551343297162193324 [10] ... ... ... and 22 more ... actual$sbY[[1]] | expected$sbY[[1]] [1] -0.674402814966215125 - -0.674402814966214903 [1] [2] -0.476607394092717240 - -0.476607394092716685 [2] [3] 0.170192384948761211 - 0.170192384948761433 [3] [4] 0.882018240521364794 - 0.882018240521364683 [4] [5] 0.377891824409545662 - 0.377891824409545829 [5] [6] -0.690971496418769204 | -0.690971496418769204 [6] [7] -0.819919688587609774 - -0.819919688587609441 [7] [8] 0.252226260950320580 - 0.252226260950320635 [8] [9] -1.156194780456845095 - -1.156194780456845317 [9] [10] -1.207857865437658162 | -1.207857865437658162 [10] ... ... ... and 6 more ... ── Failure ('test-v5-prediction-baseline.R:91:3'): single-row legacy prediction matches baseline and stays finite ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] vs expected$X[[1]] [,1] [,2] [,3] [,4] [,5] [,6] - actual$X[[1]][1, ] 0.9826379 -0.9826379 0.9826379 -0.9826379 -0.9826379 -0.9826379 + expected$X[[1]][1, ] 1.0941872 -1.0941872 1.0941872 -1.0941872 -1.0941872 -1.0941872 `actual$sbX[[1]]`: -1.30906862902939602 1.17240779583392118 `expected$sbX[[1]]`: -1.30906862902939536 1.17240779583392118 ── Failure ('test-v5-prediction-baseline.R:113:3'): legacy prediction remains batch dependent ── Expected `observed_a` to be identical to `expected$batch_a`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.901039161712106185 - -0.901039161712105963 [1] [2] 0.363159018359112462 - 0.363159018359112407 [2] [3] 0.268762591518391158 - 0.268762591518391103 [3] [4] 0.823248914948660593 - 0.823248914948660038 [4] [5] -0.759860079634851471 - -0.759860079634851249 [5] [6] -1.024040236266799297 | -1.024040236266799297 [6] [7] -1.051871031212671115 - -1.051871031212670671 [7] [8] 0.186128422263028198 - 0.186128422263028143 [8] [9] 0.465518019654671100 - 0.465518019654671156 [9] [10] 0.006543747384958467 - 0.006543747384958404 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.713550139120632698 - 0.713550139120633031 [1] [2] -1.240222643738731145 | -1.240222643738731145 [2] [3] 0.058294602617839253 - 0.058294602617839031 [3] [4] -1.313830324281398898 | -1.313830324281398898 [4] [5] 0.416909330241695075 - 0.416909330241695242 [5] [6] 0.878936507188950000 - 0.878936507188950222 [6] [7] 1.573208893649608475 - 1.573208893649608697 [7] [8] 0.082848374731328389 | 0.082848374731328389 [8] [9] -1.215408446075660009 - -1.215408446075660454 [9] [10] 0.003651613363380601 - 0.003651613363380629 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:114:3'): legacy prediction remains batch dependent ── Expected `observed_b` to be identical to `expected$batch_b`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.0834987328657079003 - -0.0834987328657079420 [1] [2] 0.7164640260843851971 - 0.7164640260843854191 [2] [3] 0.7383071888023978735 - 0.7383071888023983176 [3] [4] 1.2416869790219169367 | 1.2416869790219169367 [4] [5] 1.1557746607789027848 - 1.1557746607789032289 [5] [6] 0.5438454608364911014 - 0.5438454608364909904 [6] [7] 0.7309960876172422184 - 0.7309960876172425515 [7] [8] 0.9389355319766928831 - 0.9389355319766932162 [8] [9] 1.2028011496276251879 - 1.2028011496276254100 [9] [10] 0.7525627040089952757 - 0.7525627040089953868 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.0236675182459439443 - 0.0236675182459439477 [1] [2] 0.2456308164716116127 - 0.2456308164716113907 [2] [3] -0.0270818778136300287 - -0.0270818778136303062 [3] [4] 0.7055326497289895471 - 0.7055326497289893251 [4] [5] 0.0737539208207381725 - 0.0737539208207380059 [5] [6] 0.7227259352648418567 - 0.7227259352648417456 [6] [7] 0.1365435993200596609 - 0.1365435993200594944 [7] [8] 0.5632140890547003842 - 0.5632140890547001622 [8] [9] 0.5710643301279381134 - 0.5710643301279378914 [9] [10] 0.5990070042408299766 | 0.5990070042408299766 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:132:3'): legacy prediction accepts reordered columns and changes results ── Expected `original_result` to be identical to `expected$order_original`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.377851207310070103 - 0.377851207310070158 [1] [2] -1.661923846338249522 - -1.661923846338250188 [2] [3] -0.435415163085950907 | -0.435415163085950907 [3] [4] 1.336839952056728453 - 1.336839952056729119 [4] [5] -0.260404856721396127 - -0.260404856721396238 [5] [6] 0.224063012501865388 - 0.224063012501865610 [6] [7] 0.686007394996469788 - 0.686007394996469566 [7] [8] -0.821575951066535692 - -0.821575951066536136 [8] [9] -0.647018777696336200 - -0.647018777696336422 [9] [10] 0.042101486598538573 - 0.042101486598538518 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.352512519580514105 - -0.352512519580514050 [1] [2] 2.787958038405929706 | 2.787958038405929706 [2] [3] 1.331639200146652824 - 1.331639200146652602 [3] [4] -0.955847147775744865 - -0.955847147775744643 [4] [5] 0.490277961321384348 - 0.490277961321384181 [5] [6] 0.420438366175257761 - 0.420438366175257705 [6] [7] -1.202798926228347831 - -1.202798926228347387 [7] [8] 0.988815186193188977 - 0.988815186193189088 [8] [9] 1.179192070653736213 | 1.179192070653736213 [9] [10] -0.735179382065166087 | -0.735179382065166087 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:133:3'): legacy prediction accepts reordered columns and changes results ── Expected `reordered_result` to be identical to `expected$order_reordered`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.232012710474203770 - -0.232012710474203826 [1] [2] -0.007103787754712627 - -0.007103787754712321 [2] [3] -0.245962848808633783 - -0.245962848808633450 [3] [4] -0.101587252040220274 - -0.101587252040220288 [4] [5] 0.243208298252603344 - 0.243208298252603428 [5] [6] -0.933953470350014969 - -0.933953470350015302 [6] [7] 0.894022860229077398 - 0.894022860229077287 [7] [8] -0.399311348539900302 - -0.399311348539899746 [8] [9] 0.023147546093287341 - 0.023147546093287841 [9] [10] 0.091454283206375123 - 0.091454283206375289 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.344115555502553239 - 0.344115555502553294 [1] [2] 0.587581336765273798 - 0.587581336765274131 [2] [3] 0.970076973300089462 - 0.970076973300089240 [3] [4] 0.628299098881815343 - 0.628299098881815454 [4] [5] -0.393994665513055953 | -0.393994665513055953 [5] [6] 1.195507550406464503 - 1.195507550406464725 [6] [7] -1.339329777199538274 - -1.339329777199538052 [7] [8] 1.669908432409993093 - 1.669908432409992871 [8] [9] 0.953664482438456473 - 0.953664482438456362 [9] [10] 0.076765793302974616 - 0.076765793302974436 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:151:3'): legacy multiblock prediction loses block names ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.504460305376386642 - -0.504460305376386753 [1] [2] 0.348554591293173122 - 0.348554591293173011 [2] [3] 0.894840171620574498 - 0.894840171620574609 [3] [4] 0.382532856211924399 - 0.382532856211924455 [4] [5] -0.826959684546365703 - -0.826959684546365370 [5] [6] -0.494210418307085397 | -0.494210418307085397 [6] [7] -1.005368884887174685 - -1.005368884887175129 [7] [8] -0.981402790610049203 - -0.981402790610049425 [8] [9] -0.347839293250236048 - -0.347839293250236214 [9] [10] 1.582388204747431582 | 1.582388204747431582 [10] ... ... ... and 18 more ... actual$X[[2]] | expected$X[[2]] [1] -0.550103168888719241 - -0.550103168888718908 [1] [2] -0.314326015389588542 - -0.314326015389588875 [2] [3] 0.709372955010983408 - 0.709372955010983741 [3] [4] 1.300390306839486643 - 1.300390306839486865 [4] [5] -0.570350875740348262 - -0.570350875740348595 [5] [6] 1.183214844282103106 | 1.183214844282103106 [6] [7] -0.922890651821683061 - -0.922890651821682950 [7] [8] 0.990092429059156398 - 0.990092429059156176 [8] [9] -1.144738029161849635 | -1.144738029161849635 [9] [10] 1.482056561371451808 - 1.482056561371452252 [10] ... ... ... and 11 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.022934349077427085 - -0.022934349077427196 [1] [2] -1.050163979928612434 - -1.050163979928612656 [2] [3] -0.123987776839699457 - -0.123987776839699415 [3] [4] 0.197727108153924330 - 0.197727108153924414 [4] [5] 1.230425591137038310 | 1.230425591137038310 [5] [6] 0.220937362474467935 - 0.220937362474467713 [6] [7] 1.106195393721097320 - 1.106195393721097542 [7] [8] -1.073363363736147269 - -1.073363363736147491 [8] [9] -0.258342770455605775 - -0.258342770455605497 [9] [10] 1.749522687451318337 - 1.749522687451318559 [10] ... ... ... and 4 more ... actual$sbX[[2]] | expected$sbX[[2]] [1] 1.65637794365382507 - 1.65637794365382485 [1] [2] -0.92470516136095360 - -0.92470516136095315 [2] [3] 0.88202154801776411 - 0.88202154801776422 [3] [4] -1.01448566903566828 - -1.01448566903566872 [4] [5] -0.10250682984488793 - -0.10250682984488763 [5] [6] -0.57822701563450241 | -0.57822701563450241 [6] [7] 1.11485763187776765 - 1.11485763187776699 [7] [8] 0.26617748765561400 | 0.26617748765561400 [8] [9] -1.00547314903488250 - -1.00547314903488227 [9] [10] 1.52378627169987135 | 1.52378627169987135 [10] ... ... ... and 4 more ... ── Failure ('test-v5-prediction-baseline.R:169:3'): legacy prediction replaces transformed missing values with zero ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.731309470561102071 - 0.731309470561101960 [1] [2] -0.561031006205601313 - -0.561031006205601201 [2] [3] 0.940514623049489407 - 0.940514623049489185 [3] [4] -0.530864693040834168 - -0.530864693040834057 [4] [5] 0.195890450431500496 - 0.195890450431500662 [5] [6] -0.201288468671397797 - -0.201288468671397852 [6] [7] 0.970316774000795856 - 0.970316774000795967 [7] [8] -1.146424868698448618 - -1.146424868698448396 [8] [9] -0.165647173826357852 | -0.165647173826357852 [9] [10] 1.519231174140384777 | 1.519231174140384777 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.384518446517846946 | 0.384518446517846946 [1] [2] -0.900865240818702562 - -0.900865240818702895 [2] [3] -0.152726229247289180 - -0.152726229247289097 [3] [4] -0.301406425890131502 | -0.301406425890131502 [4] [5] -1.793985052892982823 - -1.793985052892983045 [5] [6] 1.127273003797871098 | 1.127273003797871098 [6] [7] -2.518383764690358628 - -2.518383764690359072 [7] [8] 0.897357550023914374 - 0.897357550023914152 [8] [9] 1.368090693065209695 | 1.368090693065209695 [9] [10] -0.759038127662827633 | -0.759038127662827633 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:189:3'): serialized legacy fit predicts identically ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276013462 - -0.079225667276013267 [2] [3] -0.789884115690939970 - -0.789884115690939526 [3] [4] 0.442155505782371061 - 0.442155505782371006 [4] [5] -0.115007809220551357 - -0.115007809220551316 [5] [6] 0.661078552168547828 - 0.661078552168547051 [6] [7] -0.502318791389847141 - -0.502318791389847030 [7] [8] -0.190689619388339143 - -0.190689619388338866 [8] [9] -0.458052745239416859 - -0.458052745239416692 [9] [10] 0.481785007943846100 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.183259765370397343 | -1.183259765370397343 [1] [2] 0.282398153698493859 - 0.282398153698493970 [2] [3] 2.115127694919400003 | 2.115127694919400003 [3] [4] -1.095298978587296634 | -1.095298978587296634 [4] [5] 0.280460782055447888 - 0.280460782055447777 [5] [6] -1.878530390585923415 - -1.878530390585923193 [6] [7] 1.217431504410357412 - 1.217431504410356968 [7] [8] 0.566088819689309353 | 0.566088819689309353 [8] [9] 1.160585334932070500 - 1.160585334932070278 [9] [10] -1.319204424486851712 - -1.319204424486851490 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:16:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew)` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276013462 - -0.079225667276013267 [2] [3] -0.789884115690939970 - -0.789884115690939526 [3] [4] 0.442155505782371061 - 0.442155505782371006 [4] [5] -0.115007809220551357 - -0.115007809220551316 [5] [6] 0.661078552168547828 - 0.661078552168547051 [6] [7] -0.502318791389847141 - -0.502318791389847030 [7] [8] -0.190689619388339143 - -0.190689619388338866 [8] [9] -0.458052745239416859 - -0.458052745239416692 [9] [10] 0.481785007943846100 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.183259765370397343 | -1.183259765370397343 [1] [2] 0.282398153698493859 - 0.282398153698493970 [2] [3] 2.115127694919400003 | 2.115127694919400003 [3] [4] -1.095298978587296634 | -1.095298978587296634 [4] [5] 0.280460782055447888 - 0.280460782055447777 [5] [6] -1.878530390585923415 - -1.878530390585923193 [6] [7] 1.217431504410357412 - 1.217431504410356968 [7] [8] 0.566088819689309353 | 0.566088819689309353 [8] [9] 1.160585334932070500 - 1.160585334932070278 [9] [10] -1.319204424486851712 - -1.319204424486851490 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:17:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew, preprocessing = "legacy")` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078003 - 0.452876183536077837 [1] [2] -0.079225667276013462 - -0.079225667276013267 [2] [3] -0.789884115690939970 - -0.789884115690939526 [3] [4] 0.442155505782371061 - 0.442155505782371006 [4] [5] -0.115007809220551357 - -0.115007809220551316 [5] [6] 0.661078552168547828 - 0.661078552168547051 [6] [7] -0.502318791389847141 - -0.502318791389847030 [7] [8] -0.190689619388339143 - -0.190689619388338866 [8] [9] -0.458052745239416859 - -0.458052745239416692 [9] [10] 0.481785007943846100 - 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.183259765370397343 | -1.183259765370397343 [1] [2] 0.282398153698493859 - 0.282398153698493970 [2] [3] 2.115127694919400003 | 2.115127694919400003 [3] [4] -1.095298978587296634 | -1.095298978587296634 [4] [5] 0.280460782055447888 - 0.280460782055447777 [5] [6] -1.878530390585923415 - -1.878530390585923193 [6] [7] 1.217431504410357412 - 1.217431504410356968 [7] [8] 0.566088819689309353 | 0.566088819689309353 [8] [9] 1.160585334932070500 - 1.160585334932070278 [9] [10] -1.319204424486851712 - -1.319204424486851490 [10] ... ... ... and 10 more ... [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [22s/51s] OK * checking PDF version of manual ... [5s/10s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/msma.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:59.48, 75.91 + 6.98