* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/mfp2.Rcheck’
* using R Under development (unstable) (2026-11-02 r90827)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-11-02 17:13:06 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘mfp2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mfp2’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mfp2’ can be installed ... [31s/32s] OK
* used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [54s/55s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [145s/146s]
 [145s/146s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(mfp2)
  > 
  > test_check("mfp2")
  Saving _problems/test_gee_step_memo-41.R
  Saving _problems/test_gee_step_memo-42.R
  Saving _problems/test_gee_step_memo-45.R
  [ FAIL 3 | WARN 0 | SKIP 109 | PASS 8650 ]
  
  ══ Skipped tests (109) ═════════════════════════════════════════════════════════
  • On CRAN (109): 'test-edge-cases-and-validation.R:4:3',
    'test-edge-cases-and-validation.R:14:3',
    'test-edge-cases-and-validation.R:24:3',
    'test-edge-cases-and-validation.R:61:3',
    'test-finegray-family-fit-equivalence.R:5:3',
    'test-finegray-family-fit-equivalence.R:38:3',
    'test-finegray-family-fit-equivalence.R:56:3',
    'test-finegray-family-fit-equivalence.R:77:3',
    'test-finegray-summary-prediction-regression.R:2:3',
    'test-formula-select-scoping.R:14:3', 'test-formula-select-scoping.R:26:3',
    'test-formula-select-scoping.R:36:3',
    'test-fp-selection-all-families.R:12:3',
    'test-fp-selection-all-families.R:26:3',
    'test-fp-selection-all-families.R:44:3',
    'test-fp-selection-all-families.R:63:3',
    'test-mfp2-predictions-all-families.R:4:3',
    'test-mfp2-predictions-all-families.R:29:3',
    'test-mfp2-predictions-all-families.R:43:3',
    'test-mfp2-predictions-all-families.R:53:3',
    'test-mfp2-predictions-all-families.R:65:3',
    'test-mfp2-predictions-all-families.R:78:3',
    'test-mfpi-interactions-all-families.R:10:3',
    'test-mfpi-interactions-all-families.R:23:3',
    'test-mfpi-interactions-all-families.R:34:3',
    'test-mfpi-interactions-all-families.R:63:3',
    'test-mfpi-interactions-all-families.R:75:3',
    'test-multinomial-coef-vcov-summary-plot.R:24:3',
    'test-multinomial-coef-vcov-summary-plot.R:44:3',
    'test-multinomial-coef-vcov-summary-plot.R:62:3',
    'test-multinomial-coef-vcov-summary-plot.R:78:3',
    'test-multinomial-coef-vcov-summary-plot.R:87:3',
    'test-multinomial-coef-vcov-summary-plot.R:99:3',
    'test-multinomial-coef-vcov-summary-plot.R:108:3',
    'test-multinomial-control-defaults.R:10:3',
    'test-multinomial-control-defaults.R:24:3',
    'test-multinomial-control-defaults.R:32:3',
    'test-multinomial-control-defaults.R:42:3',
    'test-multinomial-control-defaults.R:57:3',
    'test-multinomial-control-defaults.R:69:3',
    'test-multinomial-control-defaults.R:79:3',
    'test-multinomial-family-fit-equivalence.R:4:3',
    'test-multinomial-family-fit-equivalence.R:42:3',
    'test-multinomial-family-fit-equivalence.R:67:3',
    'test-multinomial-family-fit-equivalence.R:90:3',
    'test-multinomial-predict-mfpi.R:29:3',
    'test-multinomial-predict-mfpi.R:58:3',
    'test-multinomial-predict-mfpi.R:91:3',
    'test-multinomial-predict-mfpi.R:123:3',
    'test-multinomial-predict-mfpi.R:134:3',
    'test-multinomial-predict-mfpi.R:169:3', 'test-ordinal-family.R:18:3',
    'test-ordinal-family.R:27:3', 'test-ordinal-family.R:55:3',
    'test-ordinal-family.R:106:3', 'test-ordinal-family.R:116:3',
    'test-ordinal-family.R:128:3', 'test-ordinal-family.R:143:3',
    'test-ordinal-family.R:163:3', 'test-ordinal-family.R:172:3',
    'test-ordinal-family.R:196:3', 'test-ordinal-family.R:209:3',
    'test-ordinal-family.R:241:3', 'test-ordinal-family.R:278:3',
    'test-ordinal-family.R:306:3', 'test-ordinal-family.R:335:3',
    'test-ordinal-family.R:353:3', 'test-ordinal-family.R:382:3',
    'test-ordinal-print-summary.R:47:3', 'test-ordinal-print-summary.R:66:3',
    'test-ordinal-print-summary.R:76:3', 'test-ordinal-print-summary.R:104:3',
    'test-ordinal-print-summary.R:124:3', 'test-ordinal-print-summary.R:133:3',
    'test-ordinal-print-summary.R:162:3', 'test-ordinal-print-summary.R:178:3',
    'test-ordinal-print-summary.R:190:3', 'test-ordinal-print-summary.R:199:3',
    'test-ordinal-print-summary.R:207:3', 'test-ordinal-print-summary.R:219:3',
    'test-ordinal-print-summary.R:230:3', 'test-ordinal-print-summary.R:265:3',
    'test-ordinal-print-summary.R:277:3', 'test-ordinal-print-summary.R:290:3',
    'test-ordinal-print-summary.R:301:3', 'test-ordinal-print-summary.R:311:3',
    'test-ordinal-print-summary.R:322:3', 'test-ordinal-print-summary.R:341:3',
    'test-strata-integration.R:11:3', 'test-strata-integration.R:22:3',
    'test-strata-integration.R:55:3', 'test-strata-integration.R:70:3',
    'test-strata-integration.R:81:3', 'test-summary-and-print-methods.R:10:3',
    'test-summary-and-print-methods.R:20:3',
    'test-summary-and-print-methods.R:31:3',
    'test-summary-and-print-methods.R:42:3',
    'test-survreg-dist-validation.R:7:3', 'test-survreg-dist-validation.R:15:3',
    'test-survreg-dist-validation.R:23:3', 'test-survreg-dist-validation.R:30:3',
    'test-survreg-dist-validation.R:36:3',
    'test-survreg-family-fit-equivalence.R:4:3',
    'test-survreg-family-fit-equivalence.R:39:3',
    'test-survreg-family-fit-equivalence.R:55:3',
    'test-survreg-family-fit-equivalence.R:73:3',
    'test-survreg-family-fit-equivalence.R:90:3',
    'test-survreg-family-fit-equivalence.R:101:3',
    'test_model_specific_metadata.R:236:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_gee_step_memo.R:41:5'): GEE MFP selection is unchanged by the step memo ──
  Expected `coef(fast)` to be identical to `coef(slow)`.
  Differences:
      actual               | expected                
  [1] 2.53839203056862273  | 2.53839203056862273  [1]
  [2] 2.32308376294670760  | 2.32308376294670760  [2]
  [3] 0.81515578253019039  - 0.81515578253018994  [3]
  [4] -2.29705311797456879 - -2.29705311797456790 [4]
  
  ── Failure ('test_gee_step_memo.R:42:5'): GEE MFP selection is unchanged by the step memo ──
  Expected `vcov(fast)` to be identical to `vcov(slow)`.
  Differences:
       actual                  | expected                              
   [1] 0.00248024925524398168  - 0.00248024925524398341  [1]           
   [2] 0.00106878621090173852  - 0.00106878621090174047  [2]           
   [3] 0.00171212929304525533  - 0.00171212929304524839  [3]           
   [4] -0.00524907751768237396 - -0.00524907751768235661 [4]           
   [5] 0.00106878621090173917  - 0.00106878621090173960  [5]           
   [6] 0.04128986889076220052  | 0.04128986889076220052  [6]           
   [7] 0.00572752684662986358  - 0.00572752684662984363  [7]           
   [8] -0.00996288164109495993 - -0.00996288164109490962 [8]           
   [9] 0.00171212929304525403  - 0.00171212929304523994  [9]           
  [10] 0.00572752684662988353  - 0.00572752684662985491  [10]          
   ... ...                       ...                     and 6 more ...
  
  ── Failure ('test_gee_step_memo.R:45:5'): GEE MFP selection is unchanged by the step memo ──
  Expected `fast$mfp_selection_score` to be identical to `slow$mfp_selection_score`.
  Differences:
    `actual`: -183.4492213157502
  `expected`: -183.4492213157491
  
  
  [ FAIL 3 | WARN 0 | SKIP 109 | PASS 8650 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34s/34s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/mfp2.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:38.51, 317.90 + 14.74