* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/mboost.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 03:36:32 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘mboost/DESCRIPTION’ ... OK
* this is package ‘mboost’ version ‘2.9-14’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mboost’ can be installed ... [11s/12s] OK
* used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/21s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/16s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘birds_Biometrics.R’
  Comparing ‘birds_Biometrics.Rout’ to ‘birds_Biometrics.Rout.save’ ... OK
  Running ‘bugfixes.R’ [50s/54s]
  Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...
784c784
< [1] FALSE
---
> [1] TRUE
891c891,907
< There were 14 warnings (use warnings() to see them)
---
> Warning messages:
> 1: In bols(x1) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 2: In bbs(x1) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 3: In bols(z1, df = 4, contrasts.arg = "contr.dummy") :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 4: In bbs(x1, x2, df = 6) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 5: In brad(x1, x2, knots = 20) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 6: In fields::cover.design(R = unique(x), nd = knots) :
>   Number of nearst neighbors (nn) reduced to the actual number of candidates
> 7: In bmono(x1) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
> 8: In buser(x1, K = 1, lambda = 0) :
>   base-learner contains missing values; missing values are excluded per base-learner, i.e., base-learners may depend on different numbers of observations.
950,952d965
< Warning messages:
< 1: object length is not a multiple of subscript length 
< 2: object length is not a multiple of subscript length 
959,961d971
< Warning messages:
< 1: object length is not a multiple of subscript length 
< 2: object length is not a multiple of subscript length 
  Running ‘regtest-baselearner.R’ [16s/17s]
  Comparing ‘regtest-baselearner.Rout’ to ‘regtest-baselearner.Rout.save’ ...
41,42c41,42
< Warning messages:
< 1: In bols(xn) :
---
> Warning message:
> In bols(xn) :
44d43
< 2: object length is not a multiple of subscript length 
55d53
< 3: object length is not a multiple of subscript length 
96,97c94,95
< Warning messages:
< 1: In bols(xn, xf) :
---
> Warning message:
> In bols(xn, xf) :
99d96
< 2: object length is not a multiple of subscript length 
111d107
< 3: object length is not a multiple of subscript length 
122d117
< 3: object length is not a multiple of subscript length 
129,130c124,125
< Warning messages:
< 1: In bols(one, xn, lambda = 2, intercept = FALSE) :
---
> Warning message:
> In bols(one, xn, lambda = 2, intercept = FALSE) :
132d126
< 2: object length is not a multiple of subscript length 
292,293c286,287
< Warning messages:
< 1: In bbs(x, df = ncol(X)) :
---
> Warning message:
> In bbs(x, df = ncol(X)) :
295d288
< 2: object length is not a multiple of subscript length 
297,298c290,291
< Warning messages:
< 1: In bols(X, df = ncol(X)) :
---
> Warning message:
> In bols(X, df = ncol(X)) :
300d292
< 2: object length is not a multiple of subscript length 
  Running ‘regtest-blackboost.R’ [47s/51s]
  Comparing ‘regtest-blackboost.Rout’ to ‘regtest-blackboost.Rout.save’ ... OK
  Running ‘regtest-family.R’ [13s/13s]
  Comparing ‘regtest-family.Rout’ to ‘regtest-family.Rout.save’ ... OK
  Running ‘regtest-gamboost.R’
  Comparing ‘regtest-gamboost.Rout’ to ‘regtest-gamboost.Rout.save’ ...
727c727
< [1] FALSE
---
> [1] TRUE
757,758d756
< Warning message:
< object length is not a multiple of subscript length 
763,764d760
< Warning message:
< object length is not a multiple of subscript length 
780c776
< [1] FALSE
---
> [1] TRUE
  Running ‘regtest-glmboost.R’
  Comparing ‘regtest-glmboost.Rout’ to ‘regtest-glmboost.Rout.save’ ... OK
  Running ‘regtest-hatmatrix.R’
  Comparing ‘regtest-hatmatrix.Rout’ to ‘regtest-hatmatrix.Rout.save’ ... OK
  Running ‘regtest-varimp.R’
  Comparing ‘regtest-varimp.Rout’ to ‘regtest-varimp.Rout.save’ ... OK
 [154s/165s] NOTE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ...
  ‘SurvivalEnsembles.Rnw’ using ‘UTF-8’... [14s/15s] OK
  ‘mboost.Rnw’ using ‘UTF-8’... [9s/11s] OK
  ‘mboost_illustrations.Rnw’ using ‘UTF-8’... OK
  ‘mboost_tutorial.Rnw’ using ‘UTF-8’... OK
 [40s/44s] OK
* checking re-building of vignette outputs ... [65s/76s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 NOTE
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/mboost.Rcheck/00check.log’
for details.

Time 6:37.33, 336.04 + 20.49