* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/malariaAtlas.Rcheck’
* using R Under development (unstable) (2026-03-18 r89646)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-03-19 05:57:57 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘malariaAtlas/DESCRIPTION’ ... OK
* this is package ‘malariaAtlas’ version ‘1.6.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘malariaAtlas’ can be installed ... [16s/42s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/74s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [9s/22s]
 [9s/23s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2m/20m] ERROR
Error(s) in re-building vignettes:
--- re-building ‘overview.Rmd’ using rmarkdown

Quitting from overview.Rmd:199-201 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Cannot open "/tmp/RtmpGbyWqj/working_dir/RtmpwKBm8R/file6318a6f508477.json"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(MDG_pr_data)
  2. └─malariaAtlas:::autoplot.pr.points(MDG_pr_data)
  3.   └─malariaAtlas::getShp(ISO = unique_iso, format = "df", admin_level = admin_level_request)
  4.     └─malariaAtlas::listShp(...)
  5.       └─future.apply::future_lapply(...)
  6.         └─future.apply:::future_xapply(...)
  7.           └─base::tryCatch(...)
  8.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9.               └─base (local) tryCatchOne(...)
 10.                 └─value[[3L]](cond)
 11.                   └─future.apply:::onError(e, futures = fs, debug = debug)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'overview.Rmd' failed with diagnostics:
Cannot open "/tmp/RtmpGbyWqj/working_dir/RtmpwKBm8R/file6318a6f508477.json"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
--- failed re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [9s/13s] OK
* checking HTML version of manual ... [6s/12s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/malariaAtlas.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 29:56.99, 333.90 + 22.32