* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/lvm4net.Rcheck’
* using R Under development (unstable) (2023-06-03 r84490)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (GCC) 13.1.0
    GNU Fortran (GCC) 13.1.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘lvm4net/DESCRIPTION’ ... OK
* this is package ‘lvm4net’ version ‘0.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lvm4net’ can be installed ... [22s/27s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [36s/45s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [33s/41s] ERROR
Running examples in ‘lvm4net-Ex.R’ failed
The error most likely occurred in:

> ### Name: lsjm
> ### Title: Latent Space Joint Model
> ### Aliases: lsjm
> 
> ### ** Examples
> 
> ## Simulate Undirected Network
>   N <- 20
>   Ndata <- 2
>    Y <- list()
>    Y[[1]] <- network(N, directed = FALSE)[,]
>    ### create a new view that is similar to the original
>    
>   for(nd in 2:Ndata){
+     Y[[nd]] <- Y[[nd - 1]] - sample(c(-1, 0, 1), N * N, replace = TRUE, 
+    prob = c(.05, .85, .1))
+     Y[[nd]] <- 1 * (Y[[nd]]  > 0 )
+   diag(Y[[nd]]) <- 0
+    }
> 
> par(mfrow = c(1, 2))
> z <- plotY(Y[[1]], verbose = TRUE, main = 'Network 1')
> plotY(Y[[2]], EZ = z, main = 'Network 2')
> par(mfrow = c(1, 1))
> 
> modLSJM <- lsjm(Y, D = 2) 
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Warning in sqrt(det(SI4SigmaT)) : NaNs produced
Error in svd(t(Y) %*% X) : infinite or missing values in 'x'
Calls: lsjm -> rotXtoY -> svd
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [17m/22m] OK
* checking PDF version of manual ... [7s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/lvm4net.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 25:46.46, 1185.59 + 24.30