* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/list.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 03:07:43 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘list/DESCRIPTION’ ... OK
* this is package ‘list’ version ‘9.2.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘list’ can be installed ... [25s/27s] OK
* used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/39s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("list")
  Loading required package: list
  Loading required package: sandwich
  
  Test for List Experiment Design Effects
  
  Estimated population proportions 
                             est.   s.e.
  pi(Y_i(0) = 0, Z_i = 1) -0.0019 0.0070
  pi(Y_i(0) = 1, Z_i = 1)  0.0882 0.0229
  pi(Y_i(0) = 2, Z_i = 1)  0.1696 0.0287
  pi(Y_i(0) = 3, Z_i = 1)  0.2388 0.0177
  pi(Y_i(0) = 0, Z_i = 0)  0.0155 0.0051
  pi(Y_i(0) = 1, Z_i = 0)  0.1359 0.0155
  pi(Y_i(0) = 2, Z_i = 0)  0.2073 0.0271
  pi(Y_i(0) = 3, Z_i = 0)  0.1466 0.0267
  
   Y_i(0) is the (latent) count of 'yes' responses to the control items. Z_i is the (latent) binary response to the sensitive item.
  
  Bonferroni-corrected p-value
  If this value is below alpha, you reject the null hypothesis of no design effect. If it is above alpha, you fail to reject the null.
  
  Sensitive Item TRUE 
            0.7881128 
  
  
  Test for List Experiment Design Effects
  
  Estimated population proportions 
                             est.   s.e.
  pi(Y_i(0) = 0, Z_i = 1) -0.0169 0.0084
  pi(Y_i(0) = 1, Z_i = 1)  0.0101 0.0243
  pi(Y_i(0) = 2, Z_i = 1)  0.0200 0.0281
  pi(Y_i(0) = 3, Z_i = 1)  0.0545 0.0091
  pi(Y_i(0) = 0, Z_i = 0)  0.0304 0.0069
  pi(Y_i(0) = 1, Z_i = 0)  0.2140 0.0174
  pi(Y_i(0) = 2, Z_i = 0)  0.3569 0.0263
  pi(Y_i(0) = 3, Z_i = 0)  0.3309 0.0220
  
   Y_i(0) is the (latent) count of 'yes' responses to the control items. Z_i is the (latent) binary response to the sensitive item.
  
  Bonferroni-corrected p-value
  If this value is below alpha, you reject the null hypothesis of no design effect. If it is above alpha, you fail to reject the null.
  
  Sensitive Item 1 
        0.04431109 
  
  Saving _problems/test-ictreg-95.R
  Saving _problems/test-ictreg-96.R
  [ FAIL 2 | WARN 0 | SKIP 15 | PASS 22 ]
  
  ══ Skipped tests (15) ══════════════════════════════════════════════════════════
  • On CRAN (14): 'test-ictreg.R:108:3', 'test-ictreg.R:147:3',
    'test-ictreg.R:190:3', 'test-ictreg.R:219:3', 'test-ictreg.R:240:3',
    'test-ictreg.R:263:3', 'test-ictreg.R:286:3', 'test-ictreg.R:311:3',
    'test-ictreg.R:387:3', 'test-ictreg.joint.R:8:3', 'test-ictregBayes.R:11:3',
    'test-ictregBayes.R:205:3', 'test-ictregBayesHier.R:11:3',
    'test-ictregBayesHier.R:98:3'
  • empty test (1): 'test-ict.test.R:8:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-ictreg.R:95:3'): nls works ───────────────────────────────────
  Expected `x` to equal `expected`.
  Differences:
  6/10 mismatches (average diff: 3.33e-07)
  [1] -7.084 - -7.084 ==  6.36e-07
  [2]  2.490 -  2.490 == -1.11e-07
  [3]  0.261 -  0.261 ==  1.14e-07
  [4]  3.097 -  3.097 == -1.04e-06
  [5]  0.612 -  0.612 == -3.82e-08
  [6]  1.388 -  1.388 ==  5.95e-08
  Backtrace:
      ▆
   1. └─testthat::expect_that(coef(nls.results), equals(coef(nls.results.w1))) at test-ictreg.R:95:3
   2.   └─testthat (local) condition(object)
   3.     └─testthat::expect_equal(x, expected, ..., expected.label = label)
  ── Failure ('test-ictreg.R:96:3'): nls works ───────────────────────────────────
  Expected `x` to equal `expected`.
  Differences:
  27/100 mismatches (average diff: 2.22e-06)
  [1]  13.4635 - 13.4635 == -1.32e-05
  [2]  -1.8440 - -1.8440 == -5.99e-07
  [3]  -0.6471 - -0.6471 == -1.05e-07
  [4]  -8.3108 - -8.3108 ==  1.40e-05
  [5]  -1.3289 - -1.3289 == -2.41e-08
  [7]  -0.0352 - -0.0352 ==  1.04e-07
  [9]   0.0512 -  0.0512 == -8.12e-08
  [11] -1.8440 - -1.8440 == -5.99e-07
  [12]  1.6083 -  1.6083 == -1.29e-07
  ...
  Backtrace:
      ▆
   1. └─testthat::expect_that(vcov(nls.results), equals(vcov(nls.results.w1))) at test-ictreg.R:96:3
   2.   └─testthat (local) condition(object)
   3.     └─testthat::expect_equal(x, expected, ..., expected.label = label)
  
  [ FAIL 2 | WARN 0 | SKIP 15 | PASS 22 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s/11s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/list.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:28.17, 120.89 + 11.63