* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/gsDesignNB.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-30 01:22:51 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘gsDesignNB/DESCRIPTION’ ... OK
* this is package ‘gsDesignNB’ version ‘0.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gsDesignNB’ can be installed ... [11s/13s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [168s/172s]
 [168s/172s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(gsDesignNB)
  > 
  > test_check("gsDesignNB")
  toInteger: rounding done to nearest integer since ratio was not specified as postive integer .
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  Saving _problems/test-sim_gs_nbinom-159.R
  Saving _problems/test-sim_gs_nbinom_parallel-63.R
  Saving _problems/test-sim_gs_nbinom_parallel-95.R
  Saving _problems/test-sim_ssr_nbinom-101.R
  [ FAIL 4 | WARN 0 | SKIP 1 | PASS 573 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-sim_gs_nbinom_parallel.R:126:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-sim_gs_nbinom.R:159:3'): sim_gs_nbinom is reproducible with seed ──
  Expected `res1` to be identical to `res2`.
  Differences:
      actual$z_stat       | expected$z_stat        
  [1] -0.9766352714220999 | -0.9766352714220999 [1]
  [2] -1.3779660736622972 - -1.3779660736623032 [2]
  [3] -0.5743428479434103 | -0.5743428479434103 [3]
  [4] -2.5039253249889253 | -2.5039253249889253 [4]
  [5] -1.1999813372817638 | -1.1999813372817638 [5]
  [6] -1.6230634059502411 - -1.6230634059502580 [6]
  
      actual$estimate      | expected$estimate       
  [1] -0.61213849040061141 | -0.61213849040061141 [1]
  [2] -0.51241071064202404 - -0.51241071064202359 [2]
  [3] -0.41944070524022431 | -0.41944070524022431 [3]
  [4] -1.16551366125697786 | -1.16551366125697786 [4]
  [5] -0.82806342232409325 - -0.82806342232409291 [5]
  [6] -0.67297031349551772 - -0.67297031349551584 [6]
  
      actual$se           | expected$se            
  [1] 0.62678310758658473 | 0.62678310758658473 [1]
  [2] 0.37186017887955802 - 0.37186017887955608 [2]
  [3] 0.73029673259124761 | 0.73029673259124761 [3]
  [4] 0.46547460885724812 | 0.46547460885724812 [4]
  [5] 0.69006358398860523 - 0.69006358398860501 [5]
  [6] 0.41462971257214659 - 0.41462971257214110 [6]
  
    `actual$dispersion`: Inf 8.52861127230848 Inf Inf Inf 10.48008447052315
  `expected$dispersion`: Inf 8.52861127230646 Inf Inf Inf 10.48008447052375
  
      actual$blinded_info | expected$blinded_info    
  [1] 2.639916104577049   | 2.639916104577049     [1]
  [2] 6.784807165204199   - 6.784807165204279     [2]
  [3] 1.919443706789710   - 1.919443706841506     [3]
  [4] 5.052334293241379   | 5.052334293241379     [4]
  [5] 2.399844225471075   | 2.399844225471075     [5]
  [6] 5.367472684056107   | 5.367472684056107     [6]
  
      actual$unblinded_info | expected$unblinded_info    
  [1] 2.5454550566825600    | 2.5454550566825600      [1]
  [2] 7.2317041745142703    - 7.2317041745143458      [2]
  [3] 1.8750000551948960    | 1.8750000551948960      [3]
  [4] 4.6153857907286469    | 4.6153857907286469      [4]
  [5] 2.1000120228016850    - 2.1000120228016863      [5]
  [6] 5.8167333949589244    - 5.8167333949590780      [6]
  
      actual$info_unblinded_ml | expected$info_unblinded_ml    
  [1] 2.5454550566825600       | 2.5454550566825600         [1]
  [2] 7.2317041745142703       - 7.2317041745143458         [2]
  [3] 1.8750000551948960       | 1.8750000551948960         [3]
  [4] 4.6153857907286469       | 4.6153857907286469         [4]
  [5] 2.1000120228016850       - 2.1000120228016863         [5]
  [6] 5.8167333949589244       - 5.8167333949590780         [6]
  
      actual$info_blinded_ml | expected$info_blinded_ml    
  [1] 2.639916104577049      | 2.639916104577049        [1]
  [2] 6.784807165204199      - 6.784807165204279        [2]
  [3] 1.919443706789710      - 1.919443706841506        [3]
  [4] 5.052334293241379      | 5.052334293241379        [4]
  [5] 2.399844225471075      | 2.399844225471075        [5]
  [6] 5.367472684056107      | 5.367472684056107        [6]
  
  ── Failure ('test-sim_gs_nbinom_parallel.R:63:3'): sim_gs_nbinom is reproducible with seed = TRUE (sequential) ──
  Expected `res1` to be identical to `res2`.
  Differences:
       actual$z_stat        | expected$z_stat          
   [1] -2.16726363232317309 - -2.16726363232316510 [1] 
   [2] -2.02871587848396562 - -2.02871587848397050 [2] 
   [3] -0.77073150720276085 | -0.77073150720276085 [3] 
   [4] -1.31072875966765379 | -1.31072875966765379 [4] 
   [5] -0.39299230201433188 | -0.39299230201433188 [5] 
   [6] -1.16645777513107562 - -1.16645777513107496 [6] 
   [7] 1.66998674601714137  | 1.66998674601714137  [7] 
   [8] 2.20590996582743681  | 2.20590996582743681  [8] 
   [9] -1.03631257929500409 - -1.03631257929500942 [9] 
  [10] -1.74194791103418245 - -1.74194791103418267 [10]
  
       actual$estimate      | expected$estimate        
   [1] -1.52722240226997497 - -1.52722240226997674 [1] 
   [2] -0.79970863648628998 - -0.79970863648628943 [2] 
   [3] -0.66744186754110268 | -0.66744186754110268 [3] 
   [4] -0.47429832132849509 | -0.47429832132849509 [4] 
   [5] -0.25367466877262485 | -0.25367466877262485 [5] 
   [6] -0.52076265515233522 - -0.52076265515233489 [6] 
   [7] 1.80379174733004799  | 1.80379174733004799  [7] 
   [8] 1.04743610328569625  | 1.04743610328569625  [8] 
   [9] -0.77791758969372349 - -0.77791758969372260 [9] 
  [10] -0.86581350050263239 - -0.86581350050263284 [10]
  
       actual$se            | expected$se              
   [1] 0.704677723324728444 - 0.704677723324731886 [1] 
   [2] 0.394194497597121607 - 0.394194497597120386 [2] 
   [3] 0.865984926402541433 | 0.865984926402541433 [3] 
   [4] 0.361858483557465693 | 0.361858483557465693 [4] 
   [5] 0.645495261541722765 | 0.645495261541722765 [5] 
   [6] 0.446447926581668819 - 0.446447926581668764 [6] 
   [7] 1.080123391177820302 | 1.080123391177820302 [7] 
   [8] 0.474831756287389051 | 0.474831756287389051 [8] 
   [9] 0.750659217340520102 - 0.750659217340515439 [9] 
  [10] 0.497037537700312115 - 0.497037537700312337 [10]
  
       actual$dispersion | expected$dispersion     
   [1] 2.801861841882181 - 2.801861841882276   [1] 
   [2] 2.772393191839439 | 2.772393191839439   [2] 
   [3] Inf               | Inf                 [3] 
   [4] Inf               | Inf                 [4] 
   [5] Inf               | Inf                 [5] 
   [6] 2.409122139891720 - 2.409122139891736   [6] 
   [7] Inf               | Inf                 [7] 
   [8] Inf               | Inf                 [8] 
   [9] 3.047242370229390 - 3.047242370229845   [9] 
  [10] 1.167983829009472 | 1.167983829009472   [10]
  
       actual$blinded_info | expected$blinded_info     
   [1] 1.98095755341270019 | 1.98095755341270019   [1] 
   [2] 6.00074653266926639 - 6.00074653266925573   [2] 
   [3] 1.43995606591574266 - 1.43995606591574177   [3] 
   [4] 7.91891009851008398 | 7.91891009851008398   [4] 
   [5] 2.39987300107448531 | 2.39987300107448531   [5] 
   [6] 4.88777844149794838 - 4.88777844149793861   [6] 
   [7] 1.54990985544052462 | 1.54990985544052462   [7] 
   [8] 4.17397039583050056 | 4.17397039583050056   [8] 
   [9] 1.81937851423057317 - 1.81937851423057273   [9] 
  [10] 3.72265929516556282 - 3.72265929516556326   [10]
  
       actual$unblinded_info | expected$unblinded_info     
   [1] 2.01381195585256645   - 2.01381195585254691     [1] 
   [2] 6.43544946493712100   - 6.43544946493716008     [2] 
   [3] 1.33345798008456007   | 1.33345798008456007     [3] 
   [4] 7.63699457827150319   | 7.63699457827150319     [4] 
   [5] 2.40001459589333965   | 2.40001459589333965     [5] 
   [6] 5.01716494674866631   - 5.01716494674866720     [6] 
   [7] 0.85714295007957975   | 0.85714295007957975     [7] 
   [8] 4.43527433185328590   | 4.43527433185328590     [8] 
   [9] 1.77465671479479070   - 1.77465671479481268     [9] 
  [10] 4.04782400628260230   - 4.04782400628259786     [10]
  
       actual$info_unblinded_ml | expected$info_unblinded_ml     
   [1] 2.01381195585256645      - 2.01381195585254691        [1] 
   [2] 6.43544946493712100      - 6.43544946493716008        [2] 
   [3] 1.33345798008456007      | 1.33345798008456007        [3] 
   [4] 7.63699457827150319      | 7.63699457827150319        [4] 
   [5] 2.40001459589333965      | 2.40001459589333965        [5] 
   [6] 5.01716494674866631      - 5.01716494674866720        [6] 
   [7] 0.85714295007957975      | 0.85714295007957975        [7] 
   [8] 4.43527433185328590      | 4.43527433185328590        [8] 
   [9] 1.77465671479479070      - 1.77465671479481268        [9] 
  [10] 4.04782400628260230      - 4.04782400628259786        [10]
  
       actual$info_blinded_ml | expected$info_blinded_ml     
   [1] 1.98095755341270019    | 1.98095755341270019      [1] 
   [2] 6.00074653266926639    - 6.00074653266925573      [2] 
   [3] 1.43995606591574266    - 1.43995606591574177      [3] 
   [4] 7.91891009851008398    | 7.91891009851008398      [4] 
   [5] 2.39987300107448531    | 2.39987300107448531      [5] 
   [6] 4.88777844149794838    - 4.88777844149793861      [6] 
   [7] 1.54990985544052462    | 1.54990985544052462      [7] 
   [8] 4.17397039583050056    | 4.17397039583050056      [8] 
   [9] 1.81937851423057317    - 1.81937851423057273      [9] 
  [10] 3.72265929516556282    - 3.72265929516556326      [10]
  
  ── Failure ('test-sim_gs_nbinom_parallel.R:95:3'): sim_gs_nbinom is reproducible with integer seed ──
  Expected `res1` to be identical to `res2`.
  Differences:
       actual$z_stat        | expected$z_stat          
   [1] 0.13216310189501376  - 0.13216310189501265  [1] 
   [2] -0.05805626382421582 - -0.05805626382421593 [2] 
   [3] -1.77106301434166480 - -1.77106301434165547 [3] 
   [4] -2.76600189732306845 - -2.76600189732320301 [4] 
   [5] 0.65030216214078607  | 0.65030216214078607  [5] 
   [6] -1.51928785235601826 - -1.51928785235601849 [6] 
   [7] 1.25822503597656588  - 1.25822503597655833  [7] 
   [8] 0.55092766551383610  - 0.55092766551383554  [8] 
   [9] -1.91306101202262524 | -1.91306101202262524 [9] 
  [10] -0.82014641198816141 - -0.82014641198816118 [10]
  
       actual$estimate        | expected$estimate          
   [1] 0.0929204095094696564  - 0.0929204095094686849  [1] 
   [2] -0.0249972785782376951 - -0.0249972785782377020 [2] 
   [3] -1.1510191642342748608 - -1.1510191642342744167 [3] 
   [4] -1.0209779375293610570 - -1.0209779375293726034 [4] 
   [5] 0.3807767089138390237  | 0.3807767089138390237  [5] 
   [6] -0.6693444344044833239 - -0.6693444344044839900 [6] 
   [7] 0.9457433344824817123  - 0.9457433344824803800  [7] 
   [8] 0.1892942654097507504  - 0.1892942654097505562  [8] 
   [9] -1.0067191597828719640 - -1.0067191597828717420 [9] 
  [10] -0.4636002907145317931 - -0.4636002907145319041 [10]
  
       actual$se           | expected$se             
   [1] 0.70307376398658317 - 0.70307376398658183 [1] 
   [2] 0.43056988052012901 - 0.43056988052012835 [2] 
   [3] 0.64990299888461556 - 0.64990299888461878 [3] 
   [4] 0.36911686088048662 - 0.36911686088047280 [4] 
   [5] 0.58553812532366056 | 0.58553812532366056 [5] 
   [6] 0.44056459305358436 - 0.44056459305358475 [6] 
   [7] 0.75164879686919206 - 0.75164879686919561 [7] 
   [8] 0.34359186742455716 | 0.34359186742455716 [8] 
   [9] 0.52623473765663975 - 0.52623473765663964 [9] 
  [10] 0.56526527939163107 - 0.56526527939163129 [10]
  
       actual$dispersion   | expected$dispersion     
   [1] 2.2374803100972613  - 2.2374803100972018  [1] 
   [2] 2.9720989117255141  - 2.9720989117254040  [2] 
   [3] 2.7675997744333229  - 2.7675997744334153  [3] 
   [4] 19.7242422312691517 - 19.7242422313052082 [4] 
   [5] Inf                 | Inf                 [5] 
   [6] 1.9839042447221105  - 1.9839042447221020  [6] 
   [7] 3.7193358371274652  - 3.7193358371270531  [7] 
   [8] Inf                 | Inf                 [8] 
   [9] Inf                 | Inf                 [9] 
  [10] 0.6515019284258001  | 0.6515019284258001  [10]
  
       actual$blinded_info | expected$blinded_info     
   [1] 1.9691488740754666  - 1.9691488740754528    [1] 
   [2] 5.2371718390669360  - 5.2371718390669342    [2] 
   [3] 2.3116836158666616  - 2.3116836158666692    [3] 
   [4] 5.9785993189930657  - 5.9785993189930533    [4] 
   [5] 2.8798205846669909  | 2.8798205846669909    [5] 
   [6] 4.9323815444740466  - 4.9323815444740520    [6] 
   [7] 1.6846012415351785  - 1.6846012415351761    [7] 
   [8] 8.1583690866463421  - 8.1583690865411089    [8] 
   [9] 2.8699575272876050  - 2.8699575272875983    [9] 
  [10] 2.9866273432884753  | 2.9866273432884753    [10]
  
       actual$unblinded_info | expected$unblinded_info     
   [1] 2.0230108681859504    - 2.0230108681859584      [1] 
   [2] 5.3940219195359962    - 5.3940219195360122      [2] 
   [3] 2.3675704894549443    - 2.3675704894549208      [3] 
   [4] 7.3395973036052595    - 7.3395973036058102      [4] 
   [5] 2.9166857789152036    | 2.9166857789152036      [5] 
   [6] 5.1520588793696627    - 5.1520588793696538      [6] 
   [7] 1.7699869596427040    - 1.7699869596426874      [7] 
   [8] 8.4706014514840593    | 8.4706014514840593      [8] 
   [9] 3.6111121257180812    - 3.6111121257180825      [9] 
  [10] 3.1296471731286424    - 3.1296471731286402      [10]
  
       actual$info_unblinded_ml | expected$info_unblinded_ml     
   [1] 2.0230108681859504       - 2.0230108681859584         [1] 
   [2] 5.3940219195359962       - 5.3940219195360122         [2] 
   [3] 2.3675704894549443       - 2.3675704894549208         [3] 
   [4] 7.3395973036052595       - 7.3395973036058102         [4] 
   [5] 2.9166857789152036       | 2.9166857789152036         [5] 
   [6] 5.1520588793696627       - 5.1520588793696538         [6] 
   [7] 1.7699869596427040       - 1.7699869596426874         [7] 
   [8] 8.4706014514840593       | 8.4706014514840593         [8] 
   [9] 3.6111121257180812       - 3.6111121257180825         [9] 
  [10] 3.1296471731286424       - 3.1296471731286402         [10]
  
       actual$info_blinded_ml | expected$info_blinded_ml     
   [1] 1.9691488740754666     - 1.9691488740754528       [1] 
   [2] 5.2371718390669360     - 5.2371718390669342       [2] 
   [3] 2.3116836158666616     - 2.3116836158666692       [3] 
   [4] 5.9785993189930657     - 5.9785993189930533       [4] 
   [5] 2.8798205846669909     | 2.8798205846669909       [5] 
   [6] 4.9323815444740466     - 4.9323815444740520       [6] 
   [7] 1.6846012415351785     - 1.6846012415351761       [7] 
   [8] 8.1583690866463421     - 8.1583690865411089       [8] 
   [9] 2.8699575272876050     - 2.8699575272875983       [9] 
  [10] 2.9866273432884753     | 2.9866273432884753       [10]
  
  ── Failure ('test-sim_ssr_nbinom.R:101:3'): sim_ssr_nbinom is reproducible with fixed seed ──
  Expected `res1$trial_results` to be identical to `res2$trial_results`.
  Differences:
    `actual$adapt_cut_time`: 24.537314556136874 NA 21.744375870169435
  `expected$adapt_cut_time`: 24.537314556136838 NA 21.744375870168806
  
    `actual$adapt_months_to_close_pred`: 4.1743979120398826 NA 6.9094278465958956
  `expected$adapt_months_to_close_pred`: 4.1743979120398764 NA 6.9094278465956958
  
    `actual$ia2_adapt_cut_time`: 24.537314556136874 NA 21.744375870169435
  `expected$ia2_adapt_cut_time`: 24.537314556136838 NA 21.744375870168806
  
    `actual$ia2_months_to_close_pred`: 4.1743979120398826 NA 6.9094278465958956
  `expected$ia2_months_to_close_pred`: 4.1743979120398764 NA 6.9094278465956958
  
    `actual$z_ia1`: 0.9727054823053156 3.1230171428684774 1.1824433979743521
  `expected$z_ia1`: 0.9727054823053356 3.1230171428684828 1.1824433979742848
  
    `actual$if_ia1`: 0.24577039328373970 0.25851457169908720 0.24871884829680757
  `expected$if_ia1`: 0.24577039328374098 0.25851457169908792 0.24871884829672222
  
    `actual$info_ia1`: 19.100423478035520 20.090856871417252 19.329567186531424
  `expected$info_ia1`: 19.100423478035619 20.090856871417309 19.329567186524791
  
    `actual$ia1_time`: 7.0875510018287802 11.6510528826695960 8.5794182935359640
  `expected$ia1_time`: 7.0875510018285306 11.6510528826695925 8.5794182935375911
  
    `actual$z_ia2`: 2.613970282976202 NA 1.845921621493066
  `expected$z_ia2`: 2.613970282976212 NA 1.845921621493023
  
    `actual$if_ia2`: 0.7937518372648786 NA 0.7999177297302963
  `expected$if_ia2`: 0.7937518372648850 NA 0.7999177297302750
  
    `actual$info_ia2`: 61.68764278586104 NA 62.16683458612619
  `expected$info_ia2`: 61.68764278586153 NA 62.16683458612452
  
    `actual$ia2_time`: 24.537314556136874 NA 21.744375870169435
  `expected$ia2_time`: 24.537314556136838 NA 21.744375870168806
  
  
  [ FAIL 4 | WARN 0 | SKIP 1 | PASS 573 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [205s/212s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/gsDesignNB.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 8:20.45, 461.81 + 20.06