* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/gips.Rcheck’
* using R Under development (unstable) (2026-07-18 r90269)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-07-18 21:25:22 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘gips/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gips’ version ‘1.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gips’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found calls to structure() using deprecated special names:
  gips/tests/testthat/test-gips_class.R (.Dim: 1)
'.Dim' should be changed to 'dim'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 [10s/10s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(gips)
  > 
  > test_check("gips")
  Loading required package: MASS
  Loading required package: mvtnorm
  Saving _problems/test-find_MAP-241.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 465 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-find_MAP.R:238:3'): find_MAP() with calculate exact probabilities will return probability ──
  Expected `attr(g_map, "optimization_info")[["post_probabilities"]]` to equal `my_post_prob`.
  Differences:
       names(actual) | names(expected)     
   [2] "(1,2,4,3)"   | "(1,2,4,3)"     [2] 
   [3] "(1,3,2,4)"   | "(1,3,2,4)"     [3] 
   [4] "(1,2,3)"     | "(1,2,3)"       [4] 
   [5] "(1,3,4)"     - "(2,3,4)"       [5] 
   [6] "(2,3,4)"     - "(1,2,4)"       [6] 
   [7] "(1,2,4)"     - "(1,3,4)"       [7] 
   [8] "(1,2)(3,4)"  | "(1,2)(3,4)"    [8] 
   [9] "(1,3)(2,4)"  | "(1,3)(2,4)"    [9] 
  [10] "(1,4)(2,3)"  | "(1,4)(2,3)"    [10]
  
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 465 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [52s/55s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/gips.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:48.08, 91.30 + 7.86