* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/ggfacto.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 00:45:38 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘ggfacto/DESCRIPTION’ ... OK * this is package ‘ggfacto’ version ‘0.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ggfacto’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/14s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [17s/18s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [130s/137s] [130s/137s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ggfacto) > > # Pin BLAS/OpenMP before anything spawns: an OpenBLAS-pthread build fixes its thread count from the > # environment at process startup. The suite is small and runs serially, so no worker pool is sized > # here; see CLAUDE.md section Testing for the trap that guards against. > if (Sys.getenv("OMP_NUM_THREADS") == "") Sys.setenv(OMP_NUM_THREADS = "1") > > test_check("ggfacto") Saving _problems/test-ingress-328.R
QuestioncontribPositive_levels Negative_levels 
<col%><col%><col%>
Axe 1:
23.4% of
variance
(mod. 83%)		dinner31.3%dinner29.2%
tea.time25.7%Not.tea time14.5%tea time11.2%
lunch22.2%lunch19.0%
Above mean ctr73.8%43.6%30.2%
Contribution to the variance of the axis: a level on the positive side, contributing ×1; ×2; ×5; ×10 the mean contribution; a level on the negative side, contributing ×1; ×2; ×5; ×10 the mean contribution.
contrib: the whole question's contribution to the axis
Axeeigenvalue% variancecumul.Benzecri's
modified rate		cumul. mod.
<var><col%><col%>
Axe 10.23423.4%23.4%82.6%82.6%
Axe 20.19619.6%43.0%15.4%98.0%
Axe 30.17717.7%60.7%2.0%100%
Axe 40.14614.6%75.4%
Axe 50.13113.1%88.4%
Axe 60.11611.6%100%
Total1.000100%100%
QuestioncontribPositive_levels Negative_levels 
<col%><col%><col%>
Axe 1:
23.4% of
variance
(mod. 83%)		dinner31.3%dinner29.2%
tea.time25.7%Not.tea time14.5%tea time11.2%
lunch22.2%lunch19.0%
Above mean ctr73.8%43.6%30.2%
Contribution to the variance of the axis: a level on the positive side, contributing ×1; ×2; ×5; ×10 the mean contribution; a level on the negative side, contributing ×1; ×2; ×5; ×10 the mean contribution.
contrib: the whole question's contribution to the axis
Axeeigenvalue% variancecumul.Benzecri's
modified rate		cumul. mod.
<var><col%><col%>
Axe 10.23423.4%23.4%82.6%82.6%
Axe 20.19619.6%43.0%15.4%98.0%
Axe 30.17717.7%60.7%2.0%100%
Axe 40.14614.6%75.4%
Axe 50.13113.1%88.4%
Axe 60.11611.6%100%
Total1.000100%100%
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead. [ FAIL 1 | WARN 0 | SKIP 9 | PASS 2487 ] ══ Skipped tests (9) ═══════════════════════════════════════════════════════════ • On CRAN (6): 'test-ggca.R:97:1', 'test-ggpca.R:166:1', 'test-interpret.R:325:1', 'test-interpret.R:376:1', 'test-interpret.R:400:1', 'test-tooltips.R:274:1' • R/ not reachable (installed-package run) (1): 'test-non-ascii.R:42:3' • man/ not reachable (installed-package run) (2): 'test-non-ascii.R:113:3', 'test-non-ascii.R:125:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ingress.R:328:3'): filter = records the same rows, and gives the same analysis, as the pipe ── Expected `md(res, d, sup_vars = "SPC")$vars_data` to be identical to `md(fx_mca_young(), d, sup_vars = "SPC")$vars_data`. Differences: actual$Dim 1 | expected$Dim 1 [1] -0.530572705058105498 - -0.530572705058104499 [1] [2] 0.444533888021655998 - 0.444533888021655055 [2] [3] 0.627003891077402620 - 0.627003891077401732 [3] [4] -0.627003891077402953 - -0.627003891077402176 [4] [5] -0.362371421223063872 - -0.362371421223063928 [5] [6] 0.269455672191509288 | 0.269455672191509288 [6] [7] -1.154494158475500631 - -1.154494158475499521 [7] [8] 0.247391605387607266 - 0.247391605387607044 [8] [9] 1.928677415251487837 - 1.928677415251485394 [9] [10] -0.257156988700198263 - -0.257156988700197986 [10] ... ... ... and 10 more ... actual$Dim 2 | expected$Dim 2 [1] -0.766350080356466012 - -0.766350080356465457 [1] [2] 0.642077094352715094 - 0.642077094352714206 [2] [3] 0.353292961231754576 | 0.353292961231754576 [3] [4] -0.353292961231754798 | -0.353292961231754798 [4] [5] 0.785749301511606824 - 0.785749301511606491 [5] [6] -0.584275121636836148 - -0.584275121636835815 [6] [7] 0.641320157100607746 - 0.641320157100606414 [7] [8] -0.137425747950130128 - -0.137425747950129878 [8] [9] -0.259018915946499340 - -0.259018915946497452 [9] [10] 0.034535855459533221 - 0.034535855459532985 [10] ... ... ... and 10 more ... actual$Dim 3 | expected$Dim 3 [1] 0.01259506435221120 - 0.01259506435221184 [1] [2] -0.01055262148428493 - -0.01055262148428560 [2] [3] -0.37918164591157216 - -0.37918164591157166 [3] [4] 0.37918164591157261 - 0.37918164591157155 [4] [5] 0.53544782837257687 - 0.53544782837257576 [5] [6] -0.39815351340524952 - -0.39815351340524829 [6] [7] 0.37932038526444656 - 0.37932038526445272 [7] [8] -0.08128293969952430 - -0.08128293969952567 [8] [9] 0.55442928795420721 - 0.55442928795421142 [9] [10] -0.07392390506056103 - -0.07392390506056154 [10] ... ... ... and 10 more ... actual$Dim 4 | expected$Dim 4 [1] 0.068697075469960123 - 0.068697075469959915 [1] [2] -0.057557009177534209 - -0.057557009177533994 [2] [3] 0.130605495607160865 - 0.130605495607161726 [3] [4] -0.130605495607160782 - -0.130605495607161864 [4] [5] -0.339477415424352835 - -0.339477415424354445 [5] [6] 0.252431924289903409 - 0.252431924289904741 [6] [7] 1.624498702850564191 - 1.624498702850562415 [7] [8] -0.348106864896549295 - -0.348106864896548851 [8] [9] 1.072841585802803088 - 1.072841585802801756 [9] [10] -0.143045544773707095 - -0.143045544773706929 [10] ... ... ... and 10 more ... actual$Dim 5 | expected$Dim 5 [1] -0.209970315816148584 - -0.209970315816147390 [1] [2] 0.175921075413529998 - 0.175921075413528943 [2] [3] -0.500956166687920867 - -0.500956166687920423 [3] [4] 0.500956166687921201 - 0.500956166687920312 [4] [5] 0.045212363014943316 - 0.045212363014944572 [5] [6] -0.033619449421368193 - -0.033619449421368991 [6] [7] -0.305072019955980211 - -0.305072019955981377 [7] [8] 0.065372575704852928 - 0.065372575704853192 [8] [9] 1.268701503966272126 - 1.268701503966272348 [9] [10] -0.169160200528836319 - -0.169160200528836263 [10] ... ... ... and 10 more ... actual$Dim 6 | expected$Dim 6 [1] 0.525150539115826986 - 0.525150539115826764 [1] [2] -0.439990992232179190 - -0.439990992232179357 [2] [3] 0.265059629321852619 - 0.265059629321853174 [3] [4] -0.265059629321852841 - -0.265059629321853563 [4] [5] 0.438313956200568178 - 0.438313956200567012 [5] [6] -0.325925762302986977 - -0.325925762302986088 [6] [7] -0.215799520872288791 - -0.215799520872288597 [7] [8] 0.046242754472633360 - 0.046242754472633332 [8] [9] 0.803198742121266518 - 0.803198742121263409 [9] [10] -0.107093165616168884 - -0.107093165616168468 [10] ... ... ... and 10 more ... actual$contrib1 | expected$contrib1 [1] 7.47685218255486728 - 7.47685218255485662 [1] [2] 6.26438966646489082 - 6.26438966646487749 [2] [3] 11.45214086737864356 - 11.45214086737863646 [3] [4] 11.45214086737865244 - 11.45214086737865067 [4] [5] 3.26267014447188997 - 3.26267014447189796 [5] [6] 2.42608805614576895 - 2.42608805614577383 [6] [7] 13.70351621651240137 - 13.70351621651240492 [7] [8] 2.93646776068122906 - 2.93646776068123039 [8] [9] 25.49625941459449763 - 25.49625941459448697 [9] [10] 3.39950125527926339 | 3.39950125527926339 [10] ... ... ... and 5 more ... actual$contrib2 | expected$contrib2 [1] 21.4476260127922558 - 21.4476260127922274 [1] [2] 17.9696326053124444 - 17.9696326053123983 [2] [3] 4.9993323217808001 | 4.9993323217808001 [3] [4] 4.9993323217808046 | 4.9993323217808046 [4] [5] 21.0925518277394630 - 21.0925518277394417 [5] [6] 15.6842052052421828 - 15.6842052052421632 [6] [7] 5.8142559552922535 - 5.8142559552922286 [7] [8] 1.2459119904197669 - 1.2459119904197622 [8] [9] 0.6322896452334694 - 0.6322896452334602 [9] [10] 0.0843052860311291 - 0.0843052860311280 [10] ... ... ... and 5 more ... actual$contrib3 | expected$contrib3 [1] 0.00737545400927664 - 0.00737545400927738 [1] [2] 0.00617943444020460 - 0.00617943444020538 [2] [3] 7.33161777786536550 - 7.33161777786534330 [3] [4] 7.33161777786538327 - 7.33161777786533708 [4] [5] 12.46977464083078502 - 12.46977464083072817 [5] [6] 9.27239652779725354 - 9.27239652779719137 [6] [7] 2.58952373403582481 - 2.58952373403590741 [7] [8] 0.55489794300767736 - 0.55489794300769579 [8] [9] 3.68815019507162312 - 3.68815019507167730 [9] [10] 0.49175335934288389 - 0.49175335934289049 [10] ... ... ... and 5 more ... actual$contrib4 | expected$contrib4 [1] 0.2601401694098694 - 0.2601401694098678 [1] [2] 0.2179552770731342 - 0.2179552770731326 [2] [3] 1.0312668251299086 - 1.0312668251299224 [3] [4] 1.0312668251299073 - 1.0312668251299246 [4] [5] 5.9427710502122091 - 5.9427710502122668 [5] [6] 4.4189836014398489 - 4.4189836014398960 [6] [7] 56.3104776044428661 - 56.3104776044427666 [7] [8] 12.0665309152377453 - 12.0665309152377205 [8] [9] 16.3730810949786267 - 16.3730810949785877 [9] [10] 2.1830774793304841 - 2.1830774793304792 [10] ... ... ... and 5 more ... actual$contrib5 | expected$contrib5 [1] 3.0415790315866089 - 3.0415790315865774 [1] [2] 2.5483499994374319 - 2.5483499994374039 [2] [3] 18.9889075453144223 - 18.9889075453144116 [3] [4] 18.9889075453144471 - 18.9889075453143974 [4] [5] 0.1319271007959469 - 0.1319271007959543 [5] [6] 0.0980996390533969 - 0.0980996390534016 [6] [7] 2.4854647611668832 - 2.4854647611669041 [7] [8] 0.5325995916786183 - 0.5325995916786231 [8] [9] 28.6569855815676000 - 28.6569855815676391 [9] [10] 3.8209314108756822 - 3.8209314108756840 [10] ... ... ... and 4 more ... actual$contrib6 | expected$contrib6 [1] 22.17819185552949079 - 22.17819185552951211 [1] [2] 18.58172831138955772 - 18.58172831138960746 [2] [3] 6.19673466253084193 - 6.19673466253087923 [3] [4] 6.19673466253085170 - 6.19673466253089611 [4] [5] 14.45324641242031127 - 14.45324641242025976 [5] [6] 10.74728579385102556 - 10.74728579385098648 [6] [7] 1.44970290502037158 - 1.44970290502037202 [7] [8] 0.31065062250436604 - 0.31065062250436620 [8] [9] 13.38852818620125440 - 13.38852818620117624 [9] [10] 1.78513709149350142 - 1.78513709149349076 [10] ... ... ... and 5 more ... [ FAIL 1 | WARN 0 | SKIP 9 | PASS 2487 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/ggfacto.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:23.30, 183.25 + 7.03