* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/drmTMB.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-29 22:01:23 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘drmTMB/DESCRIPTION’ ... OK
* this is package ‘drmTMB’ version ‘0.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drmTMB’ can be installed ... [223s/277s] OK
* used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [84s/97s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [24s/46s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’ [116s/430s]
 [117s/431s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(drmTMB)
  
  Attaching package: 'drmTMB'
  
  The following object is masked from 'package:base':
  
      beta
  
  > 
  > # The complete suite is an evidence programme as well as a package test suite:
  > # it includes simulation, recovery, coverage, numerical-oracle, comparator,
  > # generated-contract, and reader-render audits. Keep all of it in repository CI,
  > # but run a bounded installed-package smoke lane during routine CRAN checks.
  > #
  > # Candidate 6b45164b took 14 minutes in the Windows test stage even after the
  > # existing validation-suite exclusions. An explicit allowlist is fail-closed:
  > # a new evidence suite runs in full CI by default and enters the CRAN lane only
  > # after its runtime and purpose are reviewed.
  > #
  > # The retained contexts cover release identity, formula parsing, ordinary
  > # families, representative structured/missing/meta routes, public methods,
  > # MSPL, and reader/S3 compatibility. Nothing is deleted or weakened. Julia
  > # remains defense-in-depth blocked in the CRAN lane by drm_julia_setup() unless
  > # DRMTMB_JULIA_TESTS=true; its live suite remains repository-CI-only.
  > not_cran <- isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false")))
  > if (not_cran) {
  +   test_check("drmTMB")
  + } else {
  +   source(file.path("testthat", "helper-cran-lane.R"), local = TRUE)
  +   test_check(
  +     "drmTMB",
  +     filter = drm_cran_test_filter()
  +   )
  + }
  Saving _problems/test-mspl-estimator-70.R
  Saving _problems/test-mspl-estimator-71.R
  <drmTMB Binomial event-probability (logit link) fit>
  observations: 168
  estimator: MSPL
  mu random-effect terms: 2
  standard errors: fixed-effect Wald SEs available via `vcov()` and `summary()`;
  confidence intervals are not implemented for MSPL fits.
  penalized objective: 212.5
  likelihood inference: unavailable for experimental MSPL
  convergence: 0
  [ FAIL 2 | WARN 65 | SKIP 30 | PASS 3499 ]
  
  ══ Skipped tests (30) ══════════════════════════════════════════════════════════
  • On CRAN (24): 'test-binomial-links.R:425:3',
    'test-boundary-surfacing.R:35:3', 'test-boundary-surfacing.R:54:3',
    'test-boundary-surfacing.R:67:3', 'test-boundary-surfacing.R:87:3',
    'test-boundary-surfacing.R:110:3', 'test-boundary-surfacing.R:127:3',
    'test-check-drm.R:904:3', 'test-control.R:567:3', 'test-control.R:627:3',
    'test-control.R:671:3', 'test-control.R:742:3',
    'test-formula-double-bar.R:130:3', 'test-formula-double-bar.R:155:3',
    'test-formula-grouping-guard.R:79:3', 'test-formula-smooth-terms.R:83:3',
    'test-gaussian-location-scale.R:15:1', 'test-offset-families.R:44:3',
    'test-offset-families.R:117:3', 'test-offset-families.R:136:3',
    'test-offset-families.R:157:3', 'test-optimizer-contract.R:41:1',
    'test-optimizer-contract.R:83:1', 'test-optimizer-contract.R:108:1'
  • The development audit script is not installed with drmTMB (3):
    'test-reader-journeys.R:26:3', 'test-reader-journeys.R:48:3',
    'test-reader-journeys.R:153:3'
  • docs/ is not present in this check tree (excluded via .Rbuildignore) (1):
    'test-profile-shape-boundary.R:142:3'
  • source-only development article layout is unavailable (1):
    'test-release-identity.R:71:3'
  • source-only public release surfaces are unavailable (1):
    'test-release-identity.R:17:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-mspl-estimator.R:70:3'): default and explicit ML remain equivalent ──
  Expected `default$opt$par` to equal `explicit$opt$par`.
  Differences:
    `actual`: -0.0 0.4 -10.7
  `expected`:  0.0 0.4 -10.6
  
  ── Failure ('test-mspl-estimator.R:71:3'): default and explicit ML remain equivalent ──
  Expected `default$opt$objective` to equal `explicit$opt$objective`.
  Differences:
  actual != expected but don't know how to show the difference
  
  
  [ FAIL 2 | WARN 65 | SKIP 30 | PASS 3499 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [185s/424s] OK
* checking PDF version of manual ... [7s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/drmTMB.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 23:22.71, 673.04 + 36.01