* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/distfreereg.Rcheck’ * using R Under development (unstable) (2025-04-06 r88113) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘distfreereg/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘distfreereg’ version ‘1.0.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘distfreereg’ can be installed ... [8s/11s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s/21s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [18s/24s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘0_aggregator_matrix.R’ Comparing ‘0_aggregator_matrix.Rout’ to ‘0_aggregator_matrix.Rout.save’ ... OK Running ‘0_combine_dfr_arg_lists_test.R’ Comparing ‘0_combine_dfr_arg_lists_test.Rout’ to ‘0_combine_dfr_arg_lists_test.Rout.save’ ... OK Running ‘0_combine_lists_test.R’ Comparing ‘0_combine_lists_test.Rout’ to ‘0_combine_lists_test.Rout.save’ ... OK Running ‘0_fill_covariance_list_test_01_matrix.R’ Comparing ‘0_fill_covariance_list_test_01_matrix.Rout’ to ‘0_fill_covariance_list_test_01_matrix.Rout.save’ ...92c92 < identical(fcl_1.1.Q$Q, Q) (should be TRUE): FALSE --- > identical(fcl_1.1.Q$Q, Q) (should be TRUE): TRUE 125c125 < identical(fcl_1.2.SqrtSigma$SqrtSigma, solve(matsqrt(P))) (should be TRUE): FALSE --- > identical(fcl_1.2.SqrtSigma$SqrtSigma, solve(matsqrt(P))) (should be TRUE): TRUE 273c273 < identical(fcl_2.1.Q$Q, matsqrt(P)) (should be TRUE): FALSE --- > identical(fcl_2.1.Q$Q, matsqrt(P)) (should be TRUE): TRUE Running ‘0_fill_covariance_list_test_02_number.R’ Comparing ‘0_fill_covariance_list_test_02_number.Rout’ to ‘0_fill_covariance_list_test_02_number.Rout.save’ ... OK Running ‘0_fill_covariance_list_test_03_vector.R’ Comparing ‘0_fill_covariance_list_test_03_vector.Rout’ to ‘0_fill_covariance_list_test_03_vector.Rout.save’ ... OK Running ‘0_is_named_list_test.R’ Comparing ‘0_is_named_list_test.Rout’ to ‘0_is_named_list_test.Rout.save’ ... OK Running ‘0_matrix_functions_test.R’ Comparing ‘0_matrix_functions_test.Rout’ to ‘0_matrix_functions_test.Rout.save’ ... OK Running ‘0_scale_to_01_test.R’ Comparing ‘0_scale_to_01_test.Rout’ to ‘0_scale_to_01_test.Rout.save’ ... OK Running ‘0_upstar_test.R’ Comparing ‘0_upstar_test.Rout’ to ‘0_upstar_test.Rout.save’ ... OK Running ‘1_distfreereg_test_01_basic.R’ [10s/17s] Comparing ‘1_distfreereg_test_01_basic.Rout’ to ‘1_distfreereg_test_01_basic.Rout.save’ ... OK Running ‘1_distfreereg_test_02_X_NULL.R’ Comparing ‘1_distfreereg_test_02_X_NULL.Rout’ to ‘1_distfreereg_test_02_X_NULL.Rout.save’ ... OK Running ‘1_distfreereg_test_03_override_default.R’ [9s/19s] Comparing ‘1_distfreereg_test_03_override_default.Rout’ to ‘1_distfreereg_test_03_override_default.Rout.save’ ...41c41 < identical(dfrdef_1[["epsp"]], dfrdef_3[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["epsp"]], dfrdef_3[["epsp"]]) (should be TRUE): TRUE 43c43 < identical(dfrdef_1[["epsp"]], dfrdef_4[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["epsp"]], dfrdef_4[["epsp"]]) (should be TRUE): TRUE 90c90 < identical(dfrdef_1[["mu"]], dfrdef_5[["mu"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["mu"]], dfrdef_5[["mu"]]) (should be TRUE): TRUE 94c94 < identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_5[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_5[["residuals"]][["sphered"]]) (should be TRUE): TRUE 115c115 < identical(dfrdef_1[["mu"]], dfrdef_6[["mu"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["mu"]], dfrdef_6[["mu"]]) (should be TRUE): TRUE 119c119 < identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_6[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_6[["residuals"]][["sphered"]]) (should be TRUE): TRUE 138c138 < identical(dfrdef_1[["r_tilde"]], dfrdef_7[["r_tilde"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["r_tilde"]], dfrdef_7[["r_tilde"]]) (should be TRUE): TRUE 140c140 < identical(dfrdef_1[["mu"]], dfrdef_7[["mu"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["mu"]], dfrdef_7[["mu"]]) (should be TRUE): TRUE 144c144 < identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_7[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["residuals"]][["sphered"]], dfrdef_7[["residuals"]][["sphered"]]) (should be TRUE): TRUE 146c146 < identical(dfrdef_1[["residuals"]][["transformed"]], dfrdef_7[["residuals"]][["transformed"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["residuals"]][["transformed"]], dfrdef_7[["residuals"]][["transformed"]]) (should be TRUE): TRUE 148c148 < identical(dfrdef_1[["epsp"]], dfrdef_7[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["epsp"]], dfrdef_7[["epsp"]]) (should be TRUE): TRUE 150c150 < identical(dfrdef_1[["observed_stats"]], dfrdef_7[["observed_stats"]]) (should be TRUE): FALSE --- > identical(dfrdef_1[["observed_stats"]], dfrdef_7[["observed_stats"]]) (should be TRUE): TRUE Running ‘1_distfreereg_test_04_override_formula.R’ [14s/24s] Comparing ‘1_distfreereg_test_04_override_formula.Rout’ to ‘1_distfreereg_test_04_override_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_05_override_function.R’ [10s/13s] Comparing ‘1_distfreereg_test_05_override_function.Rout’ to ‘1_distfreereg_test_05_override_function.Rout.save’ ...30c30 < identical(dfrfunc_1[["epsp"]], dfrfunc_3[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["epsp"]], dfrfunc_3[["epsp"]]) (should be TRUE): TRUE 32c32 < identical(dfrfunc_1[["epsp"]], dfrfunc_4[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["epsp"]], dfrfunc_4[["epsp"]]) (should be TRUE): TRUE 34c34 < identical(dfrfunc_1[["epsp"]], dfrfunc_5[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["epsp"]], dfrfunc_5[["epsp"]]) (should be TRUE): TRUE 84c84 < identical(dfrfunc_1[["theta_hat"]], dfrfunc_5[["theta_hat"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["theta_hat"]], dfrfunc_5[["theta_hat"]]) (should be TRUE): TRUE 86c86 < identical(dfrfunc_1[["optimization_output"]], dfrfunc_5[["optimization_output"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["optimization_output"]], dfrfunc_5[["optimization_output"]]) (should be TRUE): TRUE 88c88 < identical(dfrfunc_1[["fitted_values"]], dfrfunc_5[["fitted_values"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["fitted_values"]], dfrfunc_5[["fitted_values"]]) (should be TRUE): TRUE 90c90 < identical(dfrfunc_1[["J"]], dfrfunc_5[["J"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["J"]], dfrfunc_5[["J"]]) (should be TRUE): TRUE 96c96 < identical(dfrfunc_1[["mu"]], dfrfunc_5[["mu"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["mu"]], dfrfunc_5[["mu"]]) (should be TRUE): TRUE 98c98 < identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_5[["residuals"]][["raw"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_5[["residuals"]][["raw"]]) (should be TRUE): TRUE 100c100 < identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_5[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_5[["residuals"]][["sphered"]]) (should be TRUE): TRUE 142c142 < identical(dfrfunc_1[["theta_hat"]], dfrfunc_7[["theta_hat"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["theta_hat"]], dfrfunc_7[["theta_hat"]]) (should be TRUE): TRUE 144c144 < identical(dfrfunc_1[["optimization_output"]], dfrfunc_7[["optimization_output"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["optimization_output"]], dfrfunc_7[["optimization_output"]]) (should be TRUE): TRUE 146c146 < identical(dfrfunc_1[["fitted_values"]], dfrfunc_7[["fitted_values"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["fitted_values"]], dfrfunc_7[["fitted_values"]]) (should be TRUE): TRUE 148c148 < identical(dfrfunc_1[["J"]], dfrfunc_7[["J"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["J"]], dfrfunc_7[["J"]]) (should be TRUE): TRUE 154c154 < identical(dfrfunc_1[["mu"]], dfrfunc_7[["mu"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["mu"]], dfrfunc_7[["mu"]]) (should be TRUE): TRUE 156c156 < identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_7[["residuals"]][["raw"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_7[["residuals"]][["raw"]]) (should be TRUE): TRUE 158c158 < identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_7[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_7[["residuals"]][["sphered"]]) (should be TRUE): TRUE 171c171 < identical(dfrfunc_1[["theta_hat"]], dfrfunc_8[["theta_hat"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["theta_hat"]], dfrfunc_8[["theta_hat"]]) (should be TRUE): TRUE 173c173 < identical(dfrfunc_1[["optimization_output"]], dfrfunc_8[["optimization_output"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["optimization_output"]], dfrfunc_8[["optimization_output"]]) (should be TRUE): TRUE 175c175 < identical(dfrfunc_1[["fitted_values"]], dfrfunc_8[["fitted_values"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["fitted_values"]], dfrfunc_8[["fitted_values"]]) (should be TRUE): TRUE 177c177 < identical(dfrfunc_1[["J"]], dfrfunc_8[["J"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["J"]], dfrfunc_8[["J"]]) (should be TRUE): TRUE 181c181 < identical(dfrfunc_1[["r_tilde"]], dfrfunc_8[["r_tilde"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["r_tilde"]], dfrfunc_8[["r_tilde"]]) (should be TRUE): TRUE 183c183 < identical(dfrfunc_1[["mu"]], dfrfunc_8[["mu"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["mu"]], dfrfunc_8[["mu"]]) (should be TRUE): TRUE 185c185 < identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_8[["residuals"]][["raw"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["raw"]], dfrfunc_8[["residuals"]][["raw"]]) (should be TRUE): TRUE 187c187 < identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_8[["residuals"]][["sphered"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["sphered"]], dfrfunc_8[["residuals"]][["sphered"]]) (should be TRUE): TRUE 189c189 < identical(dfrfunc_1[["residuals"]][["transformed"]], dfrfunc_8[["residuals"]][["transformed"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["residuals"]][["transformed"]], dfrfunc_8[["residuals"]][["transformed"]]) (should be TRUE): TRUE 191c191 < identical(dfrfunc_1[["epsp"]], dfrfunc_8[["epsp"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["epsp"]], dfrfunc_8[["epsp"]]) (should be TRUE): TRUE 193c193 < identical(dfrfunc_1[["observed_stats"]], dfrfunc_8[["observed_stats"]]) (should be TRUE): FALSE --- > identical(dfrfunc_1[["observed_stats"]], dfrfunc_8[["observed_stats"]]) (should be TRUE): TRUE Running ‘1_distfreereg_test_06_override_lm.R’ Comparing ‘1_distfreereg_test_06_override_lm.Rout’ to ‘1_distfreereg_test_06_override_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_07_override_errors.R’ Comparing ‘1_distfreereg_test_07_override_errors.Rout’ to ‘1_distfreereg_test_07_override_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_08_external_f.R’ Comparing ‘1_distfreereg_test_08_external_f.Rout’ to ‘1_distfreereg_test_08_external_f.Rout.save’ ... OK Running ‘1_distfreereg_test_09_ordering.R’ [46s/78s] Comparing ‘1_distfreereg_test_09_ordering.Rout’ to ‘1_distfreereg_test_09_ordering.Rout.save’ ... OK Running ‘1_distfreereg_test_10_ordering_errors.R’ Comparing ‘1_distfreereg_test_10_ordering_errors.Rout’ to ‘1_distfreereg_test_10_ordering_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_11_test_f_errors.R’ Comparing ‘1_distfreereg_test_11_test_f_errors.Rout’ to ‘1_distfreereg_test_11_test_f_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_12_update_function.R’ [19s/33s] Comparing ‘1_distfreereg_test_12_update_function.Rout’ to ‘1_distfreereg_test_12_update_function.Rout.save’ ... OK Running ‘1_distfreereg_test_13_predict.R’ [11s/18s] Comparing ‘1_distfreereg_test_13_predict.Rout’ to ‘1_distfreereg_test_13_predict.Rout.save’ ... OK Running ‘1_distfreereg_test_14_B.R’ Comparing ‘1_distfreereg_test_14_B.Rout’ to ‘1_distfreereg_test_14_B.Rout.save’ ... OK Running ‘1_distfreereg_test_15_plot.R’ Comparing ‘1_distfreereg_test_15_plot.Rout’ to ‘1_distfreereg_test_15_plot.Rout.save’ ... OK Running ‘1_distfreereg_test_16_stat_function_errors.R’ Comparing ‘1_distfreereg_test_16_stat_function_errors.Rout’ to ‘1_distfreereg_test_16_stat_function_errors.Rout.save’ ... OK Running ‘1_distfreereg_test_17_covariance.R’ [11s/16s] Comparing ‘1_distfreereg_test_17_covariance.Rout’ to ‘1_distfreereg_test_17_covariance.Rout.save’ ...23c23 < identical(dfr_1[["epsp"]], dfr_2[["epsp"]]) (should be TRUE): FALSE --- > identical(dfr_1[["epsp"]], dfr_2[["epsp"]]) (should be TRUE): TRUE Running ‘1_distfreereg_test_18_optimization.R’ Comparing ‘1_distfreereg_test_18_optimization.Rout’ to ‘1_distfreereg_test_18_optimization.Rout.save’ ... OK Running ‘1_distfreereg_test_19_symmetric.R’ Comparing ‘1_distfreereg_test_19_symmetric.Rout’ to ‘1_distfreereg_test_19_symmetric.Rout.save’ ... OK Running ‘1_distfreereg_test_20_formula_method.R’ Comparing ‘1_distfreereg_test_20_formula_method.Rout’ to ‘1_distfreereg_test_20_formula_method.Rout.save’ ... OK Running ‘1_distfreereg_test_21_update_default.R’ [9s/13s] Comparing ‘1_distfreereg_test_21_update_default.Rout’ to ‘1_distfreereg_test_21_update_default.Rout.save’ ... OK Running ‘1_distfreereg_test_22_extra_argument_detection.R’ Comparing ‘1_distfreereg_test_22_extra_argument_detection.Rout’ to ‘1_distfreereg_test_22_extra_argument_detection.Rout.save’ ... OK Running ‘1_distfreereg_test_23_lm_method.R’ Comparing ‘1_distfreereg_test_23_lm_method.Rout’ to ‘1_distfreereg_test_23_lm_method.Rout.save’ ... OK Running ‘1_distfreereg_test_24_update_formula.R’ [10s/15s] Comparing ‘1_distfreereg_test_24_update_formula.Rout’ to ‘1_distfreereg_test_24_update_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_25_update_lm.R’ [9s/13s] Comparing ‘1_distfreereg_test_25_update_lm.Rout’ to ‘1_distfreereg_test_25_update_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_26_update_default.R’ [24s/29s] Comparing ‘1_distfreereg_test_26_update_default.Rout’ to ‘1_distfreereg_test_26_update_default.Rout.save’ ...45c45 < identical(dfr_3a[-1], dfr_3b[-1]) (should be TRUE): FALSE --- > identical(dfr_3a[-1], dfr_3b[-1]) (should be TRUE): TRUE 61c61 < identical(dfr_5a[-1], dfr_5b[-1]) (should be TRUE): FALSE --- > identical(dfr_5a[-1], dfr_5b[-1]) (should be TRUE): TRUE 73c73 < identical(dfr_6a[-1], dfr_6c[-1]) (should be TRUE): FALSE --- > identical(dfr_6a[-1], dfr_6c[-1]) (should be TRUE): TRUE 139c139 < identical(dfr_11a[-1], dfr_11c[-1]) (should be TRUE): FALSE --- > identical(dfr_11a[-1], dfr_11c[-1]) (should be TRUE): TRUE Running ‘1_distfreereg_test_27_update_formula.R’ [24s/32s] Comparing ‘1_distfreereg_test_27_update_formula.Rout’ to ‘1_distfreereg_test_27_update_formula.Rout.save’ ... OK Running ‘1_distfreereg_test_28_update_function.R’ [29s/41s] Comparing ‘1_distfreereg_test_28_update_function.Rout’ to ‘1_distfreereg_test_28_update_function.Rout.save’ ...42c42 < identical(dfr_3a[-1], dfr_3b[-1]) (should be TRUE): FALSE --- > identical(dfr_3a[-1], dfr_3b[-1]) (should be TRUE): TRUE Running ‘1_distfreereg_test_29_update_lm.R’ [21s/30s] Comparing ‘1_distfreereg_test_29_update_lm.Rout’ to ‘1_distfreereg_test_29_update_lm.Rout.save’ ... OK Running ‘1_distfreereg_test_30_group.R’ [25s/39s] Comparing ‘1_distfreereg_test_30_group.Rout’ to ‘1_distfreereg_test_30_group.Rout.save’ ... OK Running ‘1_distfreereg_test_31_formula_nls.R’ Comparing ‘1_distfreereg_test_31_formula_nls.Rout’ to ‘1_distfreereg_test_31_formula_nls.Rout.save’ ... OK Running ‘1_distfreereg_test_32_coef_method.R’ [9s/12s] Comparing ‘1_distfreereg_test_32_coef_method.Rout’ to ‘1_distfreereg_test_32_coef_method.Rout.save’ ... OK Running ‘1_distfreereg_test_33_formula_method.R’ Comparing ‘1_distfreereg_test_33_formula_method.Rout’ to ‘1_distfreereg_test_33_formula_method.Rout.save’ ... OK Running ‘1_distfreereg_test_34_formula_response_single_term.R’ Comparing ‘1_distfreereg_test_34_formula_response_single_term.Rout’ to ‘1_distfreereg_test_34_formula_response_single_term.Rout.save’ ... OK Running ‘1_distfreereg_test_35_nls_diagonal_covariance.R’ Comparing ‘1_distfreereg_test_35_nls_diagonal_covariance.Rout’ to ‘1_distfreereg_test_35_nls_diagonal_covariance.Rout.save’ ... OK Running ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.R’ [10s/12s] Comparing ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout’ to ‘1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout.save’ ... OK Running ‘1_distfreereg_test_37_covariance_forms.R’ Comparing ‘1_distfreereg_test_37_covariance_forms.Rout’ to ‘1_distfreereg_test_37_covariance_forms.Rout.save’ ... OK Running ‘1_distfreereg_test_38_vcov.R’ [55s/69s] Comparing ‘1_distfreereg_test_38_vcov.Rout’ to ‘1_distfreereg_test_38_vcov.Rout.save’ ... OK Running ‘1_distfreereg_test_39_confint.R’ [51s/73s] Comparing ‘1_distfreereg_test_39_confint.Rout’ to ‘1_distfreereg_test_39_confint.Rout.save’ ... OK Running ‘1_distfreereg_test_40_uppercase_X.R’ Comparing ‘1_distfreereg_test_40_uppercase_X.Rout’ to ‘1_distfreereg_test_40_uppercase_X.Rout.save’ ... OK Running ‘2_compare_test_01_a_a_basic_tests_func_func.R’ Comparing ‘2_compare_test_01_a_a_basic_tests_func_func.Rout’ to ‘2_compare_test_01_a_a_basic_tests_func_func.Rout.save’ ... OK Running ‘2_compare_test_01_a_b_basic_tests_func_formlm.R’ Comparing ‘2_compare_test_01_a_b_basic_tests_func_formlm.Rout’ to ‘2_compare_test_01_a_b_basic_tests_func_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_a_c_basic_tests_func_formnls.R’ Comparing ‘2_compare_test_01_a_c_basic_tests_func_formnls.Rout’ to ‘2_compare_test_01_a_c_basic_tests_func_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_a_d_basic_tests_func_lm.R’ Comparing ‘2_compare_test_01_a_d_basic_tests_func_lm.Rout’ to ‘2_compare_test_01_a_d_basic_tests_func_lm.Rout.save’ ... OK Running ‘2_compare_test_01_a_e_basic_tests_func_nls.R’ Comparing ‘2_compare_test_01_a_e_basic_tests_func_nls.Rout’ to ‘2_compare_test_01_a_e_basic_tests_func_nls.Rout.save’ ... OK Running ‘2_compare_test_01_b_a_basic_tests_formlm_func.R’ Comparing ‘2_compare_test_01_b_a_basic_tests_formlm_func.Rout’ to ‘2_compare_test_01_b_a_basic_tests_formlm_func.Rout.save’ ... OK Running ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.R’ Comparing ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.Rout’ to ‘2_compare_test_01_b_b_basic_tests_formlm_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.R’ Comparing ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.Rout’ to ‘2_compare_test_01_b_c_basic_tests_formlm_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_b_d_basic_tests_formlm_lm.R’ Comparing ‘2_compare_test_01_b_d_basic_tests_formlm_lm.Rout’ to ‘2_compare_test_01_b_d_basic_tests_formlm_lm.Rout.save’ ... OK Running ‘2_compare_test_01_b_e_basic_tests_formlm_nls.R’ Comparing ‘2_compare_test_01_b_e_basic_tests_formlm_nls.Rout’ to ‘2_compare_test_01_b_e_basic_tests_formlm_nls.Rout.save’ ... OK Running ‘2_compare_test_01_c_a_basic_tests_formnls_func.R’ Comparing ‘2_compare_test_01_c_a_basic_tests_formnls_func.Rout’ to ‘2_compare_test_01_c_a_basic_tests_formnls_func.Rout.save’ ... OK Running ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.R’ Comparing ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.Rout’ to ‘2_compare_test_01_c_b_basic_tests_formnls_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.R’ Comparing ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.Rout’ to ‘2_compare_test_01_c_c_basic_tests_formnls_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_c_d_basic_tests_formnls_lm.R’ Comparing ‘2_compare_test_01_c_d_basic_tests_formnls_lm.Rout’ to ‘2_compare_test_01_c_d_basic_tests_formnls_lm.Rout.save’ ... OK Running ‘2_compare_test_01_c_e_basic_tests_formnls_nls.R’ Comparing ‘2_compare_test_01_c_e_basic_tests_formnls_nls.Rout’ to ‘2_compare_test_01_c_e_basic_tests_formnls_nls.Rout.save’ ... OK Running ‘2_compare_test_01_d_a_basic_tests_lm_func.R’ Comparing ‘2_compare_test_01_d_a_basic_tests_lm_func.Rout’ to ‘2_compare_test_01_d_a_basic_tests_lm_func.Rout.save’ ... OK Running ‘2_compare_test_01_d_b_basic_tests_lm_formlm.R’ Comparing ‘2_compare_test_01_d_b_basic_tests_lm_formlm.Rout’ to ‘2_compare_test_01_d_b_basic_tests_lm_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_d_c_basic_tests_lm_formnls.R’ Comparing ‘2_compare_test_01_d_c_basic_tests_lm_formnls.Rout’ to ‘2_compare_test_01_d_c_basic_tests_lm_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_d_d_basic_tests_lm_lm.R’ Comparing ‘2_compare_test_01_d_d_basic_tests_lm_lm.Rout’ to ‘2_compare_test_01_d_d_basic_tests_lm_lm.Rout.save’ ... OK Running ‘2_compare_test_01_d_e_basic_tests_lm_nls.R’ Comparing ‘2_compare_test_01_d_e_basic_tests_lm_nls.Rout’ to ‘2_compare_test_01_d_e_basic_tests_lm_nls.Rout.save’ ... OK Running ‘2_compare_test_01_e_a_basic_tests_nls_func.R’ Comparing ‘2_compare_test_01_e_a_basic_tests_nls_func.Rout’ to ‘2_compare_test_01_e_a_basic_tests_nls_func.Rout.save’ ... OK Running ‘2_compare_test_01_e_b_basic_tests_nls_formlm.R’ Comparing ‘2_compare_test_01_e_b_basic_tests_nls_formlm.Rout’ to ‘2_compare_test_01_e_b_basic_tests_nls_formlm.Rout.save’ ... OK Running ‘2_compare_test_01_e_c_basic_tests_nls_formnls.R’ Comparing ‘2_compare_test_01_e_c_basic_tests_nls_formnls.Rout’ to ‘2_compare_test_01_e_c_basic_tests_nls_formnls.Rout.save’ ... OK Running ‘2_compare_test_01_e_d_basic_tests_nls_lm.R’ Comparing ‘2_compare_test_01_e_d_basic_tests_nls_lm.Rout’ to ‘2_compare_test_01_e_d_basic_tests_nls_lm.Rout.save’ ... OK Running ‘2_compare_test_01_e_e_basic_tests_nls_nls.R’ Comparing ‘2_compare_test_01_e_e_basic_tests_nls_nls.Rout’ to ‘2_compare_test_01_e_e_basic_tests_nls_nls.Rout.save’ ... OK Running ‘2_compare_test_02_func_H0_tests.R’ [110s/140s] Comparing ‘2_compare_test_02_func_H0_tests.Rout’ to ‘2_compare_test_02_func_H0_tests.Rout.save’ ... OK Running ‘2_compare_test_03_plot.R’ [70s/95s] Comparing ‘2_compare_test_03_plot.Rout’ to ‘2_compare_test_03_plot.Rout.save’ ... OK Running ‘2_compare_test_04_ks_test.R’ Comparing ‘2_compare_test_04_ks_test.Rout’ to ‘2_compare_test_04_ks_test.Rout.save’ ... OK Running ‘2_compare_test_05_rejection.R’ Comparing ‘2_compare_test_05_rejection.Rout’ to ‘2_compare_test_05_rejection.Rout.save’ ... OK Running ‘2_compare_test_06_update.R’ Comparing ‘2_compare_test_06_update.Rout’ to ‘2_compare_test_06_update.Rout.save’ ... OK Running ‘2_compare_test_07_testf_no_X.R’ Comparing ‘2_compare_test_07_testf_no_X.Rout’ to ‘2_compare_test_07_testf_no_X.Rout.save’ ... OK Running ‘2_compare_test_08_truef_no_X.R’ Comparing ‘2_compare_test_08_truef_no_X.Rout’ to ‘2_compare_test_08_truef_no_X.Rout.save’ ... OK Running ‘2_compare_test_09_no_X.R’ Comparing ‘2_compare_test_09_no_X.Rout’ to ‘2_compare_test_09_no_X.Rout.save’ ... OK Running ‘2_compare_test_10_covariances.R’ [23s/33s] Comparing ‘2_compare_test_10_covariances.Rout’ to ‘2_compare_test_10_covariances.Rout.save’ ...244c244 < all.equal(comp_dfr_1[["observed_stats"]], comp_dfr_13[["observed_stats"]]) (should be TRUE): Component "CvM": Mean relative difference: 2.35031e-08 --- > all.equal(comp_dfr_1[["observed_stats"]], comp_dfr_13[["observed_stats"]]) (should be TRUE): TRUE Running ‘2_compare_test_11_symmetric.R’ Comparing ‘2_compare_test_11_symmetric.Rout’ to ‘2_compare_test_11_symmetric.Rout.save’ ... OK Running ‘2_compare_test_12_keep.R’ Comparing ‘2_compare_test_12_keep.Rout’ to ‘2_compare_test_12_keep.Rout.save’ ... OK Running ‘2_compare_test_13_manual.R’ Comparing ‘2_compare_test_13_manual.Rout’ to ‘2_compare_test_13_manual.Rout.save’ ... OK Running ‘2_compare_test_14_err_dist.R’ Comparing ‘2_compare_test_14_err_dist.Rout’ to ‘2_compare_test_14_err_dist.Rout.save’ ... OK Running ‘2_compare_test_15_test_mean_formula_lm.R’ Comparing ‘2_compare_test_15_test_mean_formula_lm.Rout’ to ‘2_compare_test_15_test_mean_formula_lm.Rout.save’ ... OK Running ‘2_compare_test_16_true_mean_formula_lm.R’ Comparing ‘2_compare_test_16_true_mean_formula_lm.Rout’ to ‘2_compare_test_16_true_mean_formula_lm.Rout.save’ ... OK Running ‘2_compare_test_17_data_lengths.R’ Comparing ‘2_compare_test_17_data_lengths.Rout’ to ‘2_compare_test_17_data_lengths.Rout.save’ ... OK Running ‘2_compare_test_18_global_override.R’ Comparing ‘2_compare_test_18_global_override.Rout’ to ‘2_compare_test_18_global_override.Rout.save’ ... OK Running ‘2_compare_test_99_odd_situation.R’ Comparing ‘2_compare_test_99_odd_situation.Rout’ to ‘2_compare_test_99_odd_situation.Rout.save’ ... OK [12m/18m] NOTE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [36s/53s] OK * checking PDF version of manual ... [10s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-MKL/distfreereg.Rcheck/00check.log’ for details. Time 20:16.84, 823.80 + 30.90