* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/camtrapR.Rcheck’ * using R Under development (unstable) (2026-04-22 r89950) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-04-23 09:47:24 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘camtrapR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘camtrapR’ version ‘3.0.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘camtrapR’ can be installed ... [115s/172s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [22s/32s] OK * checking whether the package can be loaded with stated dependencies ... [21s/31s] OK * checking whether the package can be unloaded cleanly ... [22s/32s] OK * checking whether the namespace can be loaded with stated dependencies ... [21s/30s] OK * checking whether the namespace can be unloaded cleanly ... [22s/33s] OK * checking loading without being on the library search path ... [22s/32s] OK * checking whether startup messages can be suppressed ... [22s/32s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [183s/291s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [47s/64s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test-all.R’ [272s/410s] [273s/411s] ERROR Running the tests in ‘tests/test-all.R’ failed. Complete output: > library(testthat) > # test only if exiftool is available > if(Sys.which("exiftool") != ""){ + test_check("camtrapR") + } Loading required package: camtrapR Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 33 Total graph size: 386 Initializing model NOTE: Stopping adaptation Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 32 Total graph size: 465 Initializing model NOTE: Stopping adaptation ===== Monitors ===== thin = 1: alpha.obs.fixed.cont.effort, alpha0, beta.fixed.categ.some_factor, beta.fixed.cont.utm_y, beta0 ===== Samplers ===== RW sampler (5) - beta0 - alpha0 - alpha.obs.fixed.cont.effort - beta.fixed.cont.utm_y - beta.fixed.categ.some_factor[] (1 element) |-------------|-------------|-------------|-------------| |-------------------------------------------------------| |-------------|-------------|-------------|-------------| |-------------------------------------------------------| |-------------|-------------|-------------|-------------| |-------------------------------------------------------| Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 22 Total graph size: 331 Initializing model NOTE: Stopping adaptation Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 57 Total graph size: 513 Initializing model NOTE: Stopping adaptation Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 30 Total graph size: 313 Initializing model NOTE: Stopping adaptation Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 31 Total graph size: 313 Initializing model NOTE: Stopping adaptation Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 105 Unobserved stochastic nodes: 43 Total graph size: 353 Initializing model NOTE: Stopping adaptation Writing layer `test_detections' to data source `.' using driver `ESRI Shapefile' Writing 3 features with 7 fields and geometry type Point. adding: deployments.csv (deflated 54%) adding: images.csv (deflated 48%) Saving _problems/test-surveyDashboard-22.R Saving _problems/test-surveyDashboard-53.R ------------------------------------------------------- [1] "Total number of stations: 3" ------------------------------------------------------- [1] "Number of operational stations: 3" ------------------------------------------------------- [1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 128" ------------------------------------------------------- [1] "Calendar days with cameras set up (operational or not): 131" ------------------------------------------------------- [1] "Calendar days with cameras set up and active: 131" ------------------------------------------------------- [1] "Calendar days with cameras set up but inactive: 0" ------------------------------------------------------- [1] "total trapping period: 2009-04-02 - 2009-05-17" ------------------------------------------------------- [1] "Total number of stations: 3" ------------------------------------------------------- [1] "Number of operational stations: 3" ------------------------------------------------------- [1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 128" ------------------------------------------------------- [1] "Calendar days with cameras set up (operational or not): 131" ------------------------------------------------------- [1] "Calendar days with cameras set up and active: 131" ------------------------------------------------------- [1] "Calendar days with cameras set up but inactive: 0" ------------------------------------------------------- [1] "total trapping period: 2009-04-02 - 2009-05-17" ------------------------------------------------------- [1] "Total number of stations: 3" ------------------------------------------------------- [1] "Number of operational stations: 3" ------------------------------------------------------- [1] "Trap nights (number of active 24 hour cycles completed by independent cameras): 122.5" ------------------------------------------------------- [1] "Calendar days with cameras set up (operational or not): 131" ------------------------------------------------------- [1] "Calendar days with cameras set up and active: 125" ------------------------------------------------------- [1] "Calendar days with cameras set up but inactive: 6" ------------------------------------------------------- [1] "total trapping period: 2009-04-02 - 2009-05-17" adding: surveyReport_2026-04-23/CTtable.csv (deflated 47%) adding: surveyReport_2026-04-23/activity/activity_density_EGY_2026-04-23.png (deflated 6%) adding: surveyReport_2026-04-23/activity/activity_density_MNE_2026-04-23.png (deflated 11%) adding: surveyReport_2026-04-23/activity/activity_density_PBE_2026-04-23.png (deflated 7%) adding: surveyReport_2026-04-23/activity/activity_density_TRA_2026-04-23.png (deflated 6%) adding: surveyReport_2026-04-23/activity/activity_density_VTA_2026-04-23.png (deflated 7%) adding: surveyReport_2026-04-23/detectionMaps/Presence_EGY_2026-04-23.png (deflated 21%) adding: surveyReport_2026-04-23/detectionMaps/Presence_MNE_2026-04-23.png (deflated 20%) adding: surveyReport_2026-04-23/detectionMaps/Presence_PBE_2026-04-23.png (deflated 19%) adding: surveyReport_2026-04-23/detectionMaps/Presence_TRA_2026-04-23.png (deflated 20%) adding: surveyReport_2026-04-23/detectionMaps/Presence_VTA_2026-04-23.png (deflated 20%) adding: surveyReport_2026-04-23/detectionMaps/n_Species_2026-04-23.png (deflated 18%) adding: surveyReport_2026-04-23/readme.txt (deflated 67%) adding: surveyReport_2026-04-23/recordTable.csv (deflated 83%) adding: surveyReport_2026-04-23/scripts/camtrapR_scripts.R (deflated 70%) adding: surveyReport_2026-04-23/surveyReport/events_by_species.csv (deflated 30%) adding: surveyReport_2026-04-23/surveyReport/events_by_station.csv (deflated 54%) adding: surveyReport_2026-04-23/surveyReport/events_by_station2.csv (deflated 65%) adding: surveyReport_2026-04-23/surveyReport/species_by_station.csv (deflated 30%) adding: surveyReport_2026-04-23/surveyReport/survey_dates.csv (deflated 55%) [ FAIL 2 | WARN 0 | SKIP 1 | PASS 520 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-speciesAccum.R:36:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-surveyDashboard.R:18:3'): surveyDashboard can be launched without parameters without error ── Error in `surveyDashboard()`: Missing packages: ubms Run: install.packages(c('ubms')) Backtrace: ▆ 1. ├─shiny::testServer(...) at test-surveyDashboard.R:18:3 2. │ └─shiny:::isModuleServer(app) 3. └─camtrapR::surveyDashboard() ── Error ('test-surveyDashboard.R:33:3'): surveyDashboard server logic initializes correctly with data ── Error in `surveyDashboard(CTtable = camtraps, recordTable = recordTableSample, xcol = "utm_x", ycol = "utm_y", crs = "epsg:32650", stationCol = "Station", setupCol = "Setup_date", retrievalCol = "Retrieval_date", CTdateFormat = "dmy")`: Missing packages: ubms Run: install.packages(c('ubms')) Backtrace: ▆ 1. ├─shiny::testServer(...) at test-surveyDashboard.R:33:3 2. │ └─shiny:::isModuleServer(app) 3. └─camtrapR::surveyDashboard(...) [ FAIL 2 | WARN 0 | SKIP 1 | PASS 520 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [19s/24s] OK * checking PDF version of manual ... [13s/21s] OK * checking HTML version of manual ... [14s/25s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-MKL/camtrapR.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 27:44.47, 1051.11 + 60.58