* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/bspm.Rcheck’
* using R Under development (unstable) (2026-01-03 r89269)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bspm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bspm’ version ‘0.5.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bspm’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’ [18s/18s]
 [18s/19s] ERROR
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly=TRUE)) {
  +   home <- identical(Sys.getenv("CI"), "true")
  +   tinytest::test_package("bspm", at_home=home)
  + }
  
  test_integration.R............    0 tests    
  test_integration.R............    0 tests    
  test_integration.R............    1 tests OK 
  test_integration.R............    2 tests OK 
  test_integration.R............    3 tests OK 
  test_integration.R............    4 tests OK 
  test_integration.R............    4 tests OK 
  test_integration.R............    5 tests OK 
  test_integration.R............    6 tests OK 
  test_integration.R............    7 tests OK 
  test_integration.R............    8 tests OK 
  test_integration.R............    8 tests OK 
  test_integration.R............    9 tests OK 
  test_integration.R............    9 tests OK 
  test_integration.R............    9 tests OK 
  test_integration.R............    9 tests OK 
  test_integration.R............    9 tests OK 
  test_integration.R............   10 tests OK 
  test_integration.R............   11 tests OK 
  test_integration.R............   12 tests OK 
  test_integration.R............   13 tests OK 
  test_integration.R............   14 tests OK 
  test_integration.R............   15 tests OK 
  test_integration.R............   16 tests OK 
  test_integration.R............   17 tests OK 
  test_integration.R............   18 tests OK 
  test_integration.R............   19 tests OK 
  test_integration.R............   19 tests OK 
  test_integration.R............   20 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   21 tests OK 
  test_integration.R............   22 tests OK 
  test_integration.R............   23 tests OK 
  test_integration.R............   23 tests OK 
  test_integration.R............   24 tests OK 
  test_integration.R............   25 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   26 tests OK 
  test_integration.R............   27 tests OK 
  test_integration.R............   28 tests OK 
  test_integration.R............   28 tests OK 
  test_integration.R............   28 tests OK 0.5s
  
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    0 tests    
  test_manager.R................    1 tests OK 
  test_manager.R................    2 tests OK 
  test_manager.R................    2 tests OK 5ms
  
  test_manager_ci.R.............    0 tests    3ms [Exited at #4: not in a CI environment]
  
  test_scripts.R................    0 tests    
  test_scripts.R................    1 tests OK 
  test_scripts.R................    2 tests OK 
  test_scripts.R................    3 tests OK 
  test_scripts.R................    4 tests OK 
  test_scripts.R................    5 tests OK 
  test_scripts.R................    6 tests OK 
  test_scripts.R................    7 tests OK 
  test_scripts.R................    8 tests OK 1.7s
  
  test_utils.R..................    0 tests    Error in `.rowNamesDF<-`(x, value = value) : 
    duplicate 'row.names' are not allowed
  Calls: <Anonymous> ... row.names<- -> row.names<-.data.frame -> .rowNamesDF<-
  In addition: Warning message:
  non-unique value when setting 'row.names': 'HSMMSingleCell' 
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/bspm.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:49.41, 40.84 + 7.88