* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/bootImpute.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-29 19:32:56 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘bootImpute/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘bootImpute’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bootImpute’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [9s/25s] [10s/25s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bootImpute) > > test_check("bootImpute") Estimate Std. error 95% CI lower 95% CI upper p (Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01 x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07 x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01 Estimate Std. error 95% CI lower 95% CI upper p [1,] 1 0 NaN NaN NaN iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x iter imp variable 1 1 x 1 2 x 2 1 x 2 2 x 3 1 x 3 2 x 4 1 x 4 2 x 5 1 x 5 2 x [1] "Outcome variable(s): y" [1] "Passive variables: " [1] "Partially obs. variables: x" [1] "Fully obs. substantive model variables: z" [1] "Imputation 1" [1] "Imputing: x using z plus outcome" [1] "Imputation 2" [1] "Outcome variable(s): y" [1] "Passive variables: " [1] "Partially obs. variables: x" [1] "Fully obs. substantive model variables: z" [1] "Imputation 1" [1] "Imputing: x using z plus outcome" [1] "Imputation 2" [1] "Outcome variable(s): y" [1] "Passive variables: " [1] "Partially obs. variables: x" [1] "Fully obs. substantive model variables: z" [1] "Imputation 1" [1] "Imputing: x using z plus outcome" [1] "Imputation 2" iter imp variable 1 1 y 1 2 y 2 1 y 2 2 y 3 1 y 3 2 y 4 1 y 4 2 y 5 1 y 5 2 y iter imp variable 1 1 y 1 2 y 2 1 y 2 2 y 3 1 y 3 2 y 4 1 y 4 2 y 5 1 y 5 2 y iter imp variable 1 1 y 1 2 y 2 1 y 2 2 y 3 1 y 3 2 y 4 1 y 4 2 y 5 1 y 5 2 y [1] "Outcome variable(s): x" [1] "Passive variables: " [1] "Partially obs. variables: y" [1] "Fully obs. substantive model variables: sex" [1] "Imputation 1" [1] "Imputing: y using sex plus outcome" [1] "Imputation 2" [1] "Outcome variable(s): x" [1] "Passive variables: " [1] "Partially obs. variables: y" [1] "Fully obs. substantive model variables: sex" [1] "Imputation 1" [1] "Imputing: y using sex plus outcome" [1] "Imputation 2" [1] "Outcome variable(s): x" [1] "Passive variables: " [1] "Partially obs. variables: y" [1] "Fully obs. substantive model variables: sex" [1] "Imputation 1" [1] "Imputing: y using sex plus outcome" [1] "Imputation 2" Estimate Std. error 95% CI lower 95% CI upper p (Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01 x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07 x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01 Estimate Std. error 95% CI lower 95% CI upper p (Intercept) 0.08137426 0.19129077 -0.2965280 0.4592765 6.711440e-01 x 0.87123930 0.16282446 0.5497412 1.1927374 2.902025e-07 x2 -0.01941161 0.06178557 -0.1422755 0.1034522 7.541639e-01 Saving _problems/test_parallel-34.R iter imp variable 1 1 y 1 2 y 2 1 y 2 2 y 3 1 y 3 2 y 4 1 y 4 2 y 5 1 y 5 2 y iter imp variable 1 1 y 1 2 y Estimate Std. error 95% CI lower 95% CI upper p (Intercept) 0.05996528 0.1594198 -0.2547882 0.3747187 7.072883e-01 x 0.86829902 0.1480554 0.5760088 1.1605892 2.330791e-08 Estimate Std. error 95% CI lower 95% CI upper p (Intercept) 0.05996528 0.1594198 -0.2547882 0.3747187 7.072883e-01 x 0.86829902 0.1480554 0.5760088 1.1605892 2.330791e-08 Saving _problems/test_parallel-150.R [ FAIL 2 | WARN 7 | SKIP 0 | PASS 17 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_parallel.R:4:3'): Test bootImputeAnalyse using multiple cores ── Expected `{ ... }` to equal TRUE. Differences: 1 element mismatch ── Failure ('test_parallel.R:114:3'): Test bootImputeAnalyse using multiple cores and additional analysisfun arguments ── Expected `{ ... }` to equal TRUE. Differences: 1 element mismatch [ FAIL 2 | WARN 7 | SKIP 0 | PASS 17 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/bootImpute.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:54.97, 28.80 + 4.48