* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/WH.Rcheck’ * using R Under development (unstable) (2024-05-15 r86555) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.1.0 GNU Fortran (GCC) 14.1.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘WH/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘WH’ version ‘1.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘WH’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/14s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘spelling.R’ Running ‘testthat.R’ [21s/26s] [22s/28s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(WH) > > test_check("WH") Computing y as log(d / ec) Using d as weights Using d as weights Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Using outer iteration / Brent method Computing y as y = log(d / ec) Using d as weights Using d as weights Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method Using performance iteration / Nelder-Mead method [ FAIL 3 | WARN 0 | SKIP 0 | PASS 169 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-1D.R:147:3'): Other smoothing parameter selection criteria are working as well ── f1$y_hat (`actual`) not equal to f2$y_hat (`expected`). actual | expected [1] -40.615911 - -40.625030 [1] [2] -24.520328 - -24.504626 [2] [3] -8.422451 - -8.422443 [3] [4] -7.734365 - -7.734361 [4] [5] -8.416244 - -8.416245 [5] [6] -8.227861 - -8.227858 [6] [7] -8.408136 - -8.408134 [7] [8] -8.048681 - -8.048684 [8] [9] -7.841649 - -7.841654 [9] [10] -7.701885 - -7.701890 [10] ... ... ... and 64 more ... Backtrace: ▆ 1. └─WH (local) compare_fits(...) at test-1D.R:147:3 2. └─testthat::expect_equal(f1$y_hat, f2$y_hat, tolerance = tolerance) at test-1D.R:14:3 ── Failure ('test-1D.R:147:3'): Other smoothing parameter selection criteria are working as well ── f1$std_y_hat (`actual`) not equal to f2$std_y_hat (`expected`). actual | expected [1] 19249.5521 - 19286.2262 [1] [2] 3990.9910 - 4267.5959 [2] [3] 1.0000 | 1.0000 [3] [4] 0.5774 | 0.5774 [4] [5] 0.7071 | 0.7071 [5] [6] 0.5773 - 0.5774 [6] [7] 0.5773 | 0.5773 [7] [8] 0.4472 | 0.4472 [8] [9] 0.3780 | 0.3780 [9] Backtrace: ▆ 1. └─WH (local) compare_fits(...) at test-1D.R:147:3 2. └─testthat::expect_equal(...) at test-1D.R:15:3 ── Failure ('test-1D.R:147:3'): Other smoothing parameter selection criteria are working as well ── f1$diagnosis$REML (`actual`) not equal to f2$diagnosis$REML (`expected`). `actual`: -819.2 `expected`: -818.2 Backtrace: ▆ 1. └─WH (local) compare_fits(...) at test-1D.R:147:3 2. └─testthat::expect_equal(...) at test-1D.R:16:3 [ FAIL 3 | WARN 0 | SKIP 0 | PASS 169 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [26s/36s] OK * checking PDF version of manual ... [8s/12s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-MKL/WH.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:18.64, 90.65 + 11.63