* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/RAS.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-29 15:42:27 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘RAS/DESCRIPTION’ ... OK * this is package ‘RAS’ version ‘1.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RAS’ can be installed ... OK * used C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [146s/183s] [146s/183s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(RAS) > > test_check("RAS") ChangePoint detected at 101 (Davies p = 0.000644); left-slope 0.0516, right-slope -0.0778; slope p-values 4.2e-20 / 8.64e-21 ChangePoint detected at 101 (Davies p = 0.000644); left-slope 0.0516, right-slope -0.0778; slope p-values 4.2e-20 / 8.64e-21 Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Starting GWAS ... Saving _problems/test-gwas-77.R Starting GWAS ... Starting GWAS ... ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ChangePoint detected at 107 (Davies p = 0.000707); left-slope 0.000335, right-slope -0.000892; slope p-values 3.41e-17 / 4.78e-11 ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ChangePoint detected at 21 (Davies p = 4.56e-05); left-slope 0.0063, right-slope -0.0261; slope p-values 1.87e-16 / 9.33e-05 ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ChangePoint detected at 100 (Davies p = 0.00577); left-slope 0.000433, right-slope -0.00447; slope p-values 1.31e-07 / 0.000125 ChangePoint detected at 245 (Davies p = 0.0036); left-slope 0.00481, right-slope -0.00177; slope p-values 1.04e-16 / 0.000541 ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ras_original(): 0/3 seeds detected, nearest offsets: ras(): 0/3 seeds detected, nearest offsets: ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! Saving _problems/test-pipeline-175.R ============================== Running 4 repetition(s) across 2 parallel worker(s) Scanning complete! ============================== Repetition 1 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 4 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 5 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 6 / 6 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Running 6 repetition(s) across 2 parallel worker(s) Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Kept 3 per-repetition profiles (16 grid points each). Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 3 / 3 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Kept 3 per-repetition profiles (16 grid points each). Scanning complete! Saving _problems/test-pipeline-298.R ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Kept 2 per-repetition profiles (16 grid points each). Scanning complete! ============================== Changepoint Detection (Pass 1) ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Box-Scan Region Detection ============================== Detected 1 region(s) (T >= 2.000): [861, 1021] T=6.21 ============================== Pipeline complete. ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Changepoint Detection (Pass 1) ============================== Changepoint Validation (Pass 2) ============================== No changepoints detected. ============================== Pipeline complete. ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Box-Scan Region Detection ============================== No regions reach T >= 1.000. ============================== Pipeline complete. Saving _problems/test-pipeline-365.R ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Box-Scan Calibration: 12 permuted-phenotype scans (each one repeats the Stage-1 scan; supply box_calibration or box_threshold to skip) null scan 10 / 12 null scan 12 / 12 threshold = 1.290 (order, alpha 0.1, 12 nulls), level0 = 0.881 ============================== Box-Scan Region Detection ============================== Detected 1 region(s) (T >= 1.290): [861, 1021] T=5.90 ============================== Pipeline complete. ============================== Repetition 1 / 1 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Repetition 1 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 ============================== Repetition 2 / 2 Starting GWAS ... gc(full = TRUE) complete; malloc_trim returned: 1 Scanning complete! ============================== Box-Scan Region Detection ============================== Detected 1 region(s) (T >= 0.409): [431, 471] T=5.06 Generating plots... Plots saved to: /tmp/RtmplfI6to/working_dir/RtmpEMmZmU/file375d1bbf7b43f ============================== Pipeline complete. [ FAIL 4 | WARN 0 | SKIP 1 | PASS 297 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • malloc_trim() available in this build (1): 'test-release-memory.R:20:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-gwas.R:77:3'): compute_gwas_weights is insensitive to chunk_snps ── Expected `small` to be identical to `big`. Differences: actual | expected [3] -0.0943554862037630088 | -0.0943554862037630088 [3] [4] -0.1137862931481040951 | -0.1137862931481040951 [4] [5] -0.0320958550395039621 | -0.0320958550395039621 [5] [6] -0.1350393225204258030 - -0.1350393225204257475 [6] [7] -0.1996297770825227469 | -0.1996297770825227469 [7] [8] 0.1334945814564468536 | 0.1334945814564468536 [8] [9] 0.0321608590620560408 - 0.0321608590620560339 [9] [10] 0.0051647268651384805 | 0.0051647268651384805 [10] [11] -0.0606070369323350108 | -0.0606070369323350108 [11] [12] 0.0348500506685305439 | 0.0348500506685305439 [12] actual | expected [21] -0.0561444469754341924 | -0.0561444469754341924 [21] [22] -0.0290989744874638988 | -0.0290989744874638988 [22] [23] 0.0268499570092195841 | 0.0268499570092195841 [23] [24] -0.0745784977016134137 - -0.0745784977016134831 [24] [25] -0.1317895306681023115 | -0.1317895306681023115 [25] [26] -0.0859209592954387896 | -0.0859209592954387896 [26] [27] -0.1427350974710703824 | -0.1427350974710703824 [27] actual | expected [52] -0.0881049060951969165 | -0.0881049060951969165 [52] [53] -0.0042043274955308914 | -0.0042043274955308914 [53] [54] -0.0085369433769559005 | -0.0085369433769559005 [54] [55] -0.0224561936706266056 - -0.0224561936706265813 [55] [56] 0.0418228668757861521 | 0.0418228668757861521 [56] [57] 0.0275852110436144993 | 0.0275852110436144993 [57] [58] 0.0329050299506989316 | 0.0329050299506989316 [58] [59] -0.1350151562293969709 | -0.1350151562293969709 [59] [60] -0.0376435760933243116 | -0.0376435760933243116 [60] [61] -0.2465275913315851941 - -0.2465275913315850831 [61] ... ... ... and 4 more ... actual | expected [66] -0.0563746773750121374 | -0.0563746773750121374 [66] [67] -0.0491462681229603363 | -0.0491462681229603363 [67] [68] -0.0799026195024929026 | -0.0799026195024929026 [68] [69] 0.0483491071810417880 - 0.0483491071810418158 [69] [70] 0.1165729538428450923 | 0.1165729538428450923 [70] [71] -0.1318407369069533597 | -0.1318407369069533597 [71] [72] 0.0508506635353198691 | 0.0508506635353198691 [72] actual | expected [85] -0.0799454075606068904 | -0.0799454075606068904 [85] [86] 0.0843698113119823873 | 0.0843698113119823873 [86] [87] -0.1409441725530142797 | -0.1409441725530142797 [87] [88] -0.2095028132362257989 - -0.2095028132362258821 [88] [89] -0.0861155672901667835 | -0.0861155672901667835 [89] [90] -0.1718090220119370681 | -0.1718090220119370681 [90] [91] 0.1006247430254127301 | 0.1006247430254127301 [91] actual | expected [100] 0.1040931857279220885 | 0.1040931857279220885 [100] [101] 0.1118812328376252718 | 0.1118812328376252718 [101] [102] 0.1057942175661645973 | 0.1057942175661645973 [102] [103] 0.1057678059567648821 - 0.1057678059567648959 [103] [104] 0.1271589985292279346 | 0.1271589985292279346 [104] [105] 0.1468622022835856800 | 0.1468622022835856800 [105] [106] 0.1223890270227999816 | 0.1223890270227999816 [106] actual | expected [142] 0.0997829100215452264 | 0.0997829100215452264 [142] [143] 0.0988250713488935395 | 0.0988250713488935395 [143] [144] 0.0995276134595007023 | 0.0995276134595007023 [144] [145] 0.1159939171609355585 - 0.1159939171609355724 [145] [146] 0.1067740593955870398 | 0.1067740593955870398 [146] [147] 0.1052766449026803774 | 0.1052766449026803774 [147] [148] 0.1114650286395676565 | 0.1114650286395676565 [148] [149] 0.1107763879743500074 | 0.1107763879743500074 [149] [150] 0.1126574024673702296 | 0.1126574024673702296 [150] [151] 0.1121139015257038574 - 0.1121139015257038851 [151] ... ... ... and 3 more ... actual | expected [156] 0.1052157512398183975 | 0.1052157512398183975 [156] [157] 0.1083952041953472611 | 0.1083952041953472611 [157] [158] 0.1228140499242280498 | 0.1228140499242280498 [158] [159] 0.1058764004990524893 - 0.1058764004990525032 [159] [160] 0.1112557525742215309 | 0.1112557525742215309 [160] [161] 0.1133801985420394426 | 0.1133801985420394426 [161] [162] 0.1038116678780474089 | 0.1038116678780474089 [162] actual | expected [183] -0.8965634718679483806 | -0.8965634718679483806 [183] [184] -0.8752069031630024254 | -0.8752069031630024254 [184] [185] -0.3421654949677438995 | -0.3421654949677438995 [185] [186] -1.2764094902541727183 - -1.2764094902541720522 [186] [187] -1.6412590501180754909 | -1.6412590501180754909 [187] [188] 1.0093769893572817065 | 1.0093769893572817065 [188] [189] 0.2830887640893099966 - 0.2830887640893099411 [189] [190] 0.0496163781425424041 | 0.0496163781425424041 [190] [191] -0.5417086976534734033 | -0.5417086976534734033 [191] [192] 0.3294135678704275816 | 0.3294135678704275816 [192] ... ... ... and 4 more ... actual | expected [201] -0.4029507383114921959 | -0.4029507383114921959 [201] [202] -0.2174650765968689503 | -0.2174650765968689503 [202] [203] 0.2320175653755157941 | 0.2320175653755157941 [203] [204] -0.6396170038305273309 - -0.6396170038305278860 [204] [205] -1.2940689642980960361 | -1.2940689642980960361 [205] [206] -0.7969466527624456953 | -0.7969466527624456953 [206] [207] -1.0304041259561222965 | -1.0304041259561222965 [207] actual | expected [232] -0.8829658914154058236 | -0.8829658914154058236 [232] [233] -0.0425431263357035142 | -0.0425431263357035142 [233] [234] -0.0857746215368633547 | -0.0857746215368633547 [234] [235] -0.1935980284161780418 - -0.1935980284161778198 [235] [236] 0.3916950157419479828 | 0.3916950157419479828 [236] [237] 0.2620259324289329617 | 0.2620259324289329617 [237] [238] 0.2952049656498124675 | 0.2952049656498124675 [238] [239] -1.2188080754236128023 | -1.2188080754236128023 [239] [240] -0.3341420560821761199 | -0.3341420560821761199 [240] [241] -2.1989029725726290110 - -2.1989029725726272346 [241] ... ... ... and 4 more ... actual | expected [246] -0.5358007400100890383 | -0.5358007400100890383 [246] [247] -0.4533989163800097866 | -0.4533989163800097866 [247] [248] -0.6505983602999005910 | -0.6505983602999005910 [248] [249] 0.4566561287798452939 - 0.4566561287798454605 [249] [250] 1.0477925962981224917 | 1.0477925962981224917 [250] [251] -1.1628197745488078052 | -1.1628197745488078052 [251] [252] 0.4898357243913719072 | 0.4898357243913719072 [252] actual | expected [265] -0.7134760145340864890 | -0.7134760145340864890 [265] [266] 0.8084236322210199832 | 0.8084236322210199832 [266] [267] -1.3210013671671856361 | -1.3210013671671856361 [267] [268] -2.0023851544973720884 - -2.0023851544973729766 [268] [269] -0.7340489238638630010 | -0.7340489238638630010 [269] [270] -1.3963696033390551321 | -1.3963696033390551321 [270] [271] 0.2548318460331430169 | 0.2548318460331430169 [271] actual | expected [273] 0.3745213178035126100 | 0.3745213178035126100 [273] [274] 0.3861089622839141144 | 0.3861089622839141144 [274] [275] 0.7337517438105669587 | 0.7337517438105669587 [275] [276] 0.2078274435451087920 - 0.2078274435451090696 [276] [277] 0.1074195823574265601 | 0.1074195823574265601 [277] [278] 0.3178552201189903115 | 0.3178552201189903115 [278] [279] 0.7783013504796648663 - 0.7783013504796649773 [279] [280] 0.9606476696379927516 | 0.9606476696379927516 [280] [281] 0.5905250255339546950 | 0.5905250255339546950 [281] [282] 0.7433384024972919946 | 0.7433384024972919946 [282] actual | expected [291] 0.6888116049415655695 | 0.6888116049415655695 [291] [292] 0.8288076571112017454 | 0.8288076571112017454 [292] [293] 0.8174906568977956534 | 0.8174906568977956534 [293] [294] 0.5254009232419099007 - 0.5254009232419094566 [294] [295] 0.2019644523813674264 | 0.2019644523813674264 [295] [296] 0.4294065339778554424 | 0.4294065339778554424 [296] [297] 0.3084513208107433346 | 0.3084513208107433346 [297] actual | expected [322] 0.3817487564452235471 | 0.3817487564452235471 [322] [323] 0.9662422137852437753 | 0.9662422137852437753 [323] [324] 0.9320099440868451213 | 0.9320099440868451213 [324] [325] 0.8472909537780135558 - 0.8472909537780137779 [325] [326] 0.6971323756440097608 | 0.6971323756440097608 [326] [327] 0.7944464599406105831 | 0.7944464599406105831 [327] [328] 0.7691950993506997403 | 0.7691950993506997403 [328] [329] 0.2291307065295745959 | 0.2291307065295745959 [329] [330] 0.7397588016016483081 | 0.7397588016016483081 [330] [331] 0.0326356971452262251 - 0.0326356971452263639 [331] ... ... ... and 4 more ... actual | expected [336] 0.5946229383894436893 | 0.5946229383894436893 [336] [337] 0.6523932099090961056 | 0.6523932099090961056 [337] [338] 0.5185423847727211877 | 0.5185423847727211877 [338] [339] 0.6499361486809955846 - 0.6499361486809953625 [339] [340] 0.3002085329278260661 | 0.3002085329278260661 [340] [341] 0.2507728378999713459 | 0.2507728378999713459 [341] [342] 0.6265288494644049022 | 0.6265288494644049022 [342] actual | expected [355] 0.4792353523874373078 | 0.4792353523874373078 [355] [356] 0.4229200075535257675 | 0.4229200075535257675 [356] [357] 0.1927641001784693997 | 0.1927641001784693997 [357] [358] 0.0507935232164055325 - 0.0507935232164054076 [358] [359] 0.4666441618912459122 | 0.4666441618912459122 [359] [360] 0.1694534415021824725 | 0.1694534415021824725 [360] ── Failure ('test-pipeline.R:175:3'): ras_scan(cores = 1) is byte-for-byte reproducible (cores param is a no-op at cores=1) ── Expected `a$y` to be identical to `b$y`. Differences: actual | expected [1] 0.781658164636288011 - 0.781658164636287789 [1] [2] 0.724433928300820207 | 0.724433928300820207 [2] [3] 1.250393773490389382 - 1.250393773490389160 [3] [4] 1.188112917368027599 | 1.188112917368027599 [4] [5] 0.894620829485413993 | 0.894620829485413993 [5] [6] 0.876618865457249874 | 0.876618865457249874 [6] [7] 1.350942183411290243 | 1.350942183411290243 [7] [8] 1.186902123609747006 - 1.186902123609746562 [8] [9] 0.755800538473515027 | 0.755800538473515027 [9] [10] 0.676076915966368208 | 0.676076915966368208 [10] ... ... ... and 40 more ... ── Failure ('test-pipeline.R:298:3'): keep_reps does not perturb the averaged profile ── Expected `off$y` to be identical to `on$y`. Differences: actual | expected [1] 0.632203320233818977 - 0.632203320233819532 [1] [2] 0.438450479264629822 | 0.438450479264629822 [2] [3] 0.405473873031752918 - 0.405473873031752863 [3] [4] 0.433142994881672738 - 0.433142994881672905 [4] [5] 1.576387195001641262 - 1.576387195001640817 [5] [6] 0.715387703091416749 - 0.715387703091416860 [6] [7] 0.732745902405337102 | 0.732745902405337102 [7] [8] 0.708959717107800258 - 0.708959717107799925 [8] [9] 0.651012326085520177 | 0.651012326085520177 [9] [10] 0.883187304923445660 | 0.883187304923445660 [10] ... ... ... and 6 more ... ── Failure ('test-pipeline.R:365:3'): the detector choice does not change the scan profile ── Expected `a$scan$y` to be identical to `b$scan$y`. Differences: actual | expected [1] 0.80389272070143136 - 0.80389272070143214 [1] [2] 0.51013093718302716 | 0.51013093718302716 [2] [3] 0.53422798054830534 - 0.53422798054830523 [3] [4] 0.36863713454800762 - 0.36863713454800784 [4] [5] 1.63904667317211739 - 1.63904667317211672 [5] [6] 0.70457302345704964 - 0.70457302345704997 [6] [7] 0.53798102536691661 | 0.53798102536691661 [7] [8] 0.89883931355727542 - 0.89883931355727520 [8] [9] 0.52120811477680351 - 0.52120811477680340 [9] [10] 0.85115613453832539 | 0.85115613453832539 [10] ... ... ... and 6 more ... [ FAIL 4 | WARN 0 | SKIP 1 | PASS 297 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/RAS.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:53.07, 179.11 + 7.16