* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/PanelSelect.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-29 15:22:00 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘PanelSelect/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PanelSelect’ version ‘2.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PanelSelect’ can be installed ... [28s/24s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [32s/35s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [252s/282s] [253s/282s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(PanelSelect) > test_check("PanelSelect") Saving _problems/test-data-omission-21.R Saving _problems/test-data-omission-21.R Saving _problems/test-interface-arguments-36.R Saving _problems/test-interface-arguments-103.R Saving _problems/test-interface-capabilities-45.R Saving _problems/test-interface-inputs-36.R Saving _problems/test-interface-inputs-36.R Saving _problems/test-interface-inputs-67.R Saving _problems/test-interface-inputs-67.R Saving _problems/test-interface-inputs-122.R Saving _problems/test-interface-inputs-122.R Saving _problems/test-interface-update-30.R Saving _problems/test-opg-default-36.R Saving _problems/test-opg-default-36.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-pln-reuse-mode-78.R Saving _problems/test-probit-default-32.R Saving _problems/test-probit-default-33.R Saving _problems/test-probit-default-49.R Saving _problems/test-probit-default-50.R Saving _problems/test-probit-default-51.R Saving _problems/test-probit-default-49.R Saving _problems/test-probit-default-50.R Saving _problems/test-probit-default-51.R Saving _problems/test-probit-default-54.R Saving _problems/test-probit-default-60.R Saving _problems/test-probit-default-64.R Saving _problems/test-probit-default-80.R Saving _problems/test-probit-initialization-87.R Saving _problems/test-probit-initialization-173.R Saving _problems/test-probit-initialization-173.R Saving _problems/test-probit-initialization-191.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-137.R Saving _problems/test-re-initialization-182.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-re-initialization-246.R Saving _problems/test-saved-objects-185.R [ FAIL 72 | WARN 0 | SKIP 0 | PASS 7095 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-data-omission.R:21:5'): a factor level present only in omitted rows is dropped, as in a pre-subsetted fit ── Expected `coef(fit)` to be identical to `coef(reference)`. Differences: actual | expected [1] 0.426453616824933546 - 0.426453616824933601 [1] [2] 0.472557850159306680 - 0.472557850159306791 [2] [3] -0.659103213965333556 - -0.659103213965333778 [3] [4] 1.000000000000000000 | 1.000000000000000000 [4] ── Failure ('test-data-omission.R:21:5'): a factor level present only in omitted rows is dropped, as in a pre-subsetted fit ── Expected `coef(fit)` to be identical to `coef(reference)`. Differences: actual | expected [1] 0.42645361682493349 - 0.42645361682493360 [1] [2] 0.47255785015930668 - 0.47255785015930679 [2] [3] -0.65910321396533367 - -0.65910321396533378 [3] [4] 1.00000000000000000 | 1.00000000000000000 [4] ── Failure ('test-interface-arguments.R:35:3'): positional arguments in the new order equal the fully named call ── Expected `fit_contents(standalone)` to be identical to `fit_contents(...)`. Differences: actual$coefficients | expected$coefficients [1] 0.192352743959079142 - 0.192352743959079198 [1] [2] 0.441968842402130135 | 0.441968842402130135 [2] [3] 0.423544702287181607 - 0.423544702287181496 [3] actual$covariance$opg | expected$covariance$opg [1] 0.0174836814773727117 - 0.0174836814773726944 [1] [2] 0.0015749045691838583 - 0.0015749045691838522 [2] [3] 0.0013529656064528684 - 0.0013529656064528565 [3] [4] 0.0015749045691838583 - 0.0015749045691838522 [4] [5] 0.0270925042087347481 - 0.0270925042087347308 [5] [6] 0.0083317281349732947 - 0.0083317281349732878 [6] [7] 0.0013529656064528684 - 0.0013529656064528565 [7] [8] 0.0083317281349732947 - 0.0083317281349732878 [8] [9] 0.0292707832870764302 - 0.0292707832870764025 [9] `actual$loglik`: -117.126317438522406 `expected$loglik`: -117.126317438522392 actual$loglik_by_unit | expected$loglik_by_unit [1] -9.52585174495419018 | -9.52585174495419018 [1] [2] -6.05676381003605169 - -6.05676381003605080 [2] [3] -5.29620059621322259 - -5.29620059621322170 [3] [4] -8.18974766895926365 - -8.18974766895926187 [4] [5] -4.34245858670995855 | -4.34245858670995855 [5] [6] -5.58788742189151577 | -5.58788742189151577 [6] [7] -7.91031079247134539 | -7.91031079247134539 [7] actual$loglik_by_unit | expected$loglik_by_unit [9] -7.32027004414387861 | -7.32027004414387861 [9] [10] -8.64533123695032835 | -8.64533123695032835 [10] [11] -4.64683059226360839 | -4.64683059226360839 [11] [12] -4.43196365579917373 - -4.43196365579917462 [12] [13] -5.64607421990699088 | -5.64607421990699088 [13] [14] -5.47173836305521721 - -5.47173836305521633 [14] [15] -5.77595124119005110 - -5.77595124119005021 [15] [16] -3.99309370632579030 | -3.99309370632579030 [16] [17] -3.99680905867307468 - -3.99680905867307512 [17] [18] -4.99832421421057393 - -4.99832421421057482 [18] ... ... ... and 2 more ... actual$score | expected$score [1] 3.052081717138170447 - 3.052081717138170003 [1] [2] 0.108248388744847546 - 0.108248388744848212 [2] [3] -0.253388772412664998 - -0.253388772412662999 [3] [4] 0.438003003318979456 - 0.438003003318979900 [4] [5] -0.528963680858018481 - -0.528963680858018370 [5] [6] -0.513166341306978691 - -0.513166341306979246 [6] [7] 2.706935713085509398 - 2.706935713085511619 [7] [8] 1.088073618408643695 - 1.088073618408644139 [8] [9] 1.193884747872204333 - 1.193884747872204999 [9] [10] 3.080902530555746033 - 3.080902530555746921 [10] ... ... ... and 50 more ... actual$optimizer$par | expected$optimizer$par [1] 0.192352743959079142 - 0.192352743959079198 [1] [2] 0.441968842402130135 | 0.441968842402130135 [2] [3] -0.859096216063378382 - -0.859096216063378604 [3] actual$optimizer$control$parscale | expected$optimizer$control$parscale [1] 0.117790537646763241 - 0.117790537646763213 [1] [2] 0.101639566284117022 - 0.101639566284117064 [2] [3] 0.096936690393110272 | 0.096936690393110272 [3] actual$optimizer$gradient | expected$optimizer$gradient [1] 0.0000452173110835 - 0.0000452173110888 [1] [2] -0.0000177575635759 - -0.0000177575635712 [2] [3] 0.0000186192109258 - 0.0000186192109308 [3] actual$optimizer$covariance$opg | expected$optimizer$covariance$opg [1] 0.0174836814773727117 - 0.0174836814773726944 [1] [2] 0.0015749045691838583 - 0.0015749045691838522 [2] [3] 0.0031943868006062302 - 0.0031943868006062033 [3] [4] 0.0015749045691838583 - 0.0015749045691838522 [4] [5] 0.0270925042087347481 - 0.0270925042087347308 [5] [6] 0.0196714256841867483 - 0.0196714256841867378 [6] [7] 0.0031943868006062302 - 0.0031943868006062033 [7] [8] 0.0196714256841867483 - 0.0196714256841867378 [8] [9] 0.1631683179082165924 - 0.1631683179082165092 [9] `actual$optimizer$stationarity$Q_OPG`: 0.000000000090698354727 `expected$optimizer$stationarity$Q_OPG`: 0.000000000090698354764 ── Failure ('test-interface-arguments.R:103:3'): fit settings act as arguments of panel_select ── Expected `coef(omitted)` to be identical to `coef(complete)`. Differences: actual | expected [1] 0.35139627195602835 - 0.35139627195602702 [1] [2] 0.53579921889919924 - 0.53579921889919946 [2] [3] -0.21733154376858249 - -0.21733154376858169 [3] [4] 0.23305209718086684 | 0.23305209718086684 [4] [5] 0.38750885390796908 - 0.38750885390796935 [5] [6] 0.63234497053154981 - 0.63234497053154959 [6] [7] 0.76468451007226201 - 0.76468451007226190 [7] ── Failure ('test-interface-capabilities.R:45:3'): add_information() stores what an observed fit stores, once ── Expected `informed$optimizer$information` to equal `observed$optimizer$information`. Differences: actual | expected [1] 15.7861763600008 - 15.7861763600476 [1] [2] -4.3705889956774 - -4.3705889956151 [2] [3] -0.9008788161930 - -0.9008788161484 [3] [4] -1.5760021566212 - -1.5760021566109 [4] [5] -0.2782849176282 - -0.2782849176205 [5] [6] 0.6642983735944 - 0.6642983739104 [6] [7] -4.3705889956774 - -4.3705889956151 [7] [8] 20.2460030395142 - 20.2460030392604 [8] [9] -3.1771090996398 - -3.1771090997043 [9] [10] 0.2913167060322 - 0.2913167060261 [10] ... ... ... and 26 more ... ── Failure ('test-interface-inputs.R:36:3'): outcome is the first argument and the formula alias is gone ── Expected `actual$coefficients` to be identical to `expected$coefficients`. Differences: actual | expected [1] 0.55926760420064880 | 0.55926760420064880 [1] [2] 0.03372389247715671 - 0.03372389247715715 [2] [3] 0.27150878276598983 - 0.27150878276598972 [3] [4] 0.68282025821562120 - 0.68282025821562076 [4] [5] 0.58016661144415504 - 0.58016661144415516 [5] [6] 0.54369716340067265 - 0.54369716340067242 [6] [7] 0.43322790565498720 - 0.43322790565498731 [7] [8] 0.19734635405657419 - 0.19734635405657708 [8] Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(named, positional) at test-interface-inputs.R:36:3 2. └─testthat::expect_identical(actual$coefficients, expected$coefficients) at test-interface-inputs.R:24:3 ── Failure ('test-interface-inputs.R:36:3'): outcome is the first argument and the formula alias is gone ── Expected `actual$score` to be identical to `expected$score`. Differences: actual | expected [1] 1.490695920591216694 - 1.490695920591217138 [1] [2] -0.438154633161563833 - -0.438154633161562279 [2] [3] 0.595196567027458490 - 0.595196567027459045 [3] [4] -2.472460306961617782 - -2.472460306961618670 [4] [5] 0.621013076789419971 - 0.621013076789422969 [5] [6] 0.193591517855214140 - 0.193591517855213807 [6] [7] -0.167524878574936115 - -0.167524878574935338 [7] [8] -0.060290063164160274 - -0.060290063164162203 [8] [9] -1.621705573036434256 - -1.621705573036434478 [9] [10] 0.323596294490149872 - 0.323596294490151093 [10] ... ... ... and 150 more ... Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(named, positional) at test-interface-inputs.R:36:3 2. └─testthat::expect_identical(actual$score, expected$score) at test-interface-inputs.R:26:3 ── Failure ('test-interface-inputs.R:67:3'): .outcome stands for the outcome regressors in the selection equation ── Expected `actual$coefficients` to be identical to `expected$coefficients`. Differences: actual | expected [1] 0.559267604200649027 - 0.559267604200648916 [1] [2] 0.033723892477156681 - 0.033723892477156743 [2] [3] 0.271508782765989998 - 0.271508782765990497 [3] [4] 0.682820258215620757 - 0.682820258215621090 [4] [5] 0.580166611444155045 | 0.580166611444155045 [5] [6] 0.543697163400672645 - 0.543697163400672756 [6] [7] 0.433227905654987422 - 0.433227905654987311 [7] [8] 0.197346354056576440 - 0.197346354056574580 [8] Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(short, fit(y ~ x, d ~ x + w)) at test-interface-inputs.R:67:3 2. └─testthat::expect_identical(actual$coefficients, expected$coefficients) at test-interface-inputs.R:24:3 ── Failure ('test-interface-inputs.R:67:3'): .outcome stands for the outcome regressors in the selection equation ── Expected `actual$score` to be identical to `expected$score`. Differences: actual | expected [1] 1.490695920591216472 - 1.490695920591216028 [1] [2] -0.438154633161562390 - -0.438154633161563112 [2] [3] 0.595196567027458379 - 0.595196567027459267 [3] [4] -2.472460306961618226 - -2.472460306961616894 [4] [5] 0.621013076789422636 - 0.621013076789420415 [5] [6] 0.193591517855213197 - 0.193591517855213280 [6] [7] -0.167524878574934477 - -0.167524878574934671 [7] [8] -0.060290063164162272 - -0.060290063164161106 [8] [9] -1.621705573036434478 - -1.621705573036433146 [9] [10] 0.323596294490152037 - 0.323596294490149483 [10] ... ... ... and 150 more ... Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(short, fit(y ~ x, d ~ x + w)) at test-interface-inputs.R:67:3 2. └─testthat::expect_identical(actual$score, expected$score) at test-interface-inputs.R:26:3 ── Failure ('test-interface-inputs.R:122:3'): subset rows equal a fit on those rows, with lm semantics for bases and padding ── Expected `actual$coefficients` to be identical to `expected$coefficients`. Differences: actual | expected [1] 0.753437558261433438 - 0.753437558261433216 [1] [2] 0.114481881326366497 - 0.114481881326367232 [2] [3] 0.718166897695168172 - 0.718166897695168505 [3] [4] 0.076622603831905722 - 0.076622603831905681 [4] [5] 0.387666325002238410 - 0.387666325002238521 [5] [6] 0.889122695378600447 - 0.889122695378600669 [6] [7] 0.528652988569996540 | 0.528652988569996540 [7] [8] -0.213649352943902526 - -0.213649352943902471 [8] Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(subset, reference) at test-interface-inputs.R:122:3 2. └─testthat::expect_identical(actual$coefficients, expected$coefficients) at test-interface-inputs.R:24:3 ── Failure ('test-interface-inputs.R:122:3'): subset rows equal a fit on those rows, with lm semantics for bases and padding ── Expected `actual$score` to be identical to `expected$score`. Differences: actual | expected [1] -0.038841298866115030 - -0.038841298866114704 [1] [2] 0.352955014320982696 - 0.352955014320981753 [2] [3] -0.173385151457782494 - -0.173385151457781606 [3] [4] 0.904025227939005527 - 0.904025227939006859 [4] [5] 0.997312844086716388 - 0.997312844086716166 [5] [6] -0.463184086197578337 - -0.463184086197577560 [6] [7] 0.901528095763130310 - 0.901528095763130533 [7] [8] 0.798735020799580808 - 0.798735020799580586 [8] [9] 0.855946879402249672 - 0.855946879402250449 [9] [10] 0.117542537506684724 - 0.117542537506683670 [10] ... ... ... and 150 more ... Backtrace: ▆ 1. └─PanelSelect (local) expect_same_fit(subset, reference) at test-interface-inputs.R:122:3 2. └─testthat::expect_identical(actual$score, expected$score) at test-interface-inputs.R:26:3 ── Failure ('test-interface-update.R:30:3'): outcome and selection updates equal direct refits from the same warm starts ── Expected `coef(selection)` to be identical to `coef(direct(y ~ x, d ~ w + x, names(start)))`. Differences: actual | expected [1] 0.498012205007 - 0.498012212947 [1] [2] 0.474922695194 - 0.474922690414 [2] [3] 0.112920443867 - 0.112920446529 [3] [4] 0.166310521943 - 0.166310519295 [4] [5] 0.398876091482 - 0.398876088146 [5] [6] 0.785952873800 - 0.785952876571 [6] [7] 0.434007865929 - 0.434007866018 [7] [8] 0.602162046513 - 0.602162052443 [8] ── Failure ('test-opg-default.R:36:5'): default inference is independent-unit OPG without information: optim ── Expected `coef(fit)` to be identical to `coef(observed)`. Differences: `actual`: 0.00112530428581585 1.58329868589840128 0.00000000000000000 `expected`: 0.00112530428581571 1.58329868589839662 0.00000000000000000 ── Failure ('test-opg-default.R:36:5'): default inference is independent-unit OPG without information: maxLik ── Expected `coef(fit)` to be identical to `coef(observed)`. Differences: `actual`: 0.00112530428581569 1.58329868589839950 0.00000000000000000 `expected`: 0.00112530428581557 1.58329868589839928 0.00000000000000000 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian | expected$hessian [2] -0.6862376367107655417144 | -0.6862376367107655417144 [2] [3] -0.0000123823851997918255 | -0.0000123823851997918255 [3] [4] -0.0577670975364031891175 | -0.0577670975364031891175 [4] [5] -0.2344652111219146517485 - -0.2344652111219146795040 [5] [6] -0.0000165169561756573073 - -0.0000165169561756573039 [6] [7] -0.0577670975364031891175 | -0.0577670975364031891175 [7] [8] -0.2344652111219146517485 | -0.2344652111219146517485 [8] [9] -0.0000165169561756573073 | -0.0000165169561756573073 [9] ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-pln-reuse-mode.R:78:5'): PLN inner mode partials retain the full index derivatives ── Expected `mode` to be identical to `full`. Differences: actual$hessian[1:8] vs expected$hessian[1:8] -0.9533271616026015582434638417907991 -0.5661278382182531876409825599694159 -0.0000074336019148607136150302618360 - 0.0000000000000000000000000000000591 + 0.0000000000000000000000000000000653 - 0.0000000000000000000000000000000123 + 0.0000000000000000000000000000000000 0.0000000000000000000000000000000000 0.0000000000000000000000000000000591 0.0000000000000000000000000000000123 ── Failure ('test-probit-default.R:32:3'): RE is the default start and equals the explicit re path ── Expected `default` to be identical to `starts(f, control = fit_control(init = "re"))`. Differences: actual | expected [1] 0.086414451584397423 | 0.086414451584397423 [1] [2] 0.281987132047330225 | 0.281987132047330225 [2] [3] 0.474861851817441172 - 0.474861851817441338 [3] [4] 0.380283603842817564 - 0.380283603842817508 [4] [5] 0.433256356670330467 | 0.433256356670330467 [5] [6] 0.189811067957407681 - 0.189811067957407820 [6] [7] 0.000000000000000000 | 0.000000000000000000 [7] ── Failure ('test-probit-default.R:33:3'): RE is the default start and equals the explicit re path ── Expected `default` to be identical to `starts(f, control = fit_control(init = "default"))`. Differences: actual | expected [1] 0.086414451584397423 | 0.086414451584397423 [1] [2] 0.281987132047330225 | 0.281987132047330225 [2] [3] 0.474861851817441172 - 0.474861851817441338 [3] [4] 0.380283603842817564 - 0.380283603842817508 [4] [5] 0.433256356670330467 | 0.433256356670330467 [5] [6] 0.189811067957407681 - 0.189811067957407820 [6] [7] 0.000000000000000000 | 0.000000000000000000 [7] ── Failure ('test-probit-default.R:49:5'): initialization aliases preserve starts, fitted models and updates ── Expected `coef(actual)` to be identical to `coef(expected)`. Differences: actual | expected [1] 0.08815139432248155 | 0.08815139432248155 [1] [2] 0.28202131896908628 | 0.28202131896908628 [2] [3] 0.47530806723731761 - 0.47530806723731789 [3] [4] 0.38062409832968003 - 0.38062409832968019 [4] [5] 0.44128355428967508 | 0.44128355428967508 [5] [6] 0.18877965077381723 - 0.18877965077381678 [6] [7] 0.00000000000000000 | 0.00000000000000000 [7] ── Failure ('test-probit-default.R:50:5'): initialization aliases preserve starts, fitted models and updates ── Expected `actual$loglik_by_unit` to be identical to `expected$loglik_by_unit`. Differences: actual | expected [1] -4.62933802841731179 | -4.62933802841731179 [1] [2] -6.55982816606597385 - -6.55982816606597474 [2] [3] -3.97633309474071561 - -3.97633309474071472 [3] [4] -4.43362179579235516 - -4.43362179579235605 [4] [5] -3.90606172204446933 - -3.90606172204446978 [5] [6] -12.99114659964190288 - -12.99114659964189933 [6] [7] -4.08156764862546506 - -4.08156764862546595 [7] [8] -6.16712352172329847 - -6.16712352172329759 [8] [9] -6.54940030475056645 - -6.54940030475056556 [9] [10] -4.65191173545483760 | -4.65191173545483760 [10] ... ... ... and 10 more ... ── Failure ('test-probit-default.R:51:5'): initialization aliases preserve starts, fitted models and updates ── Expected `actual$score` to be identical to `expected$score`. Differences: actual | expected [1] -0.29462926025906610583 | -0.29462926025906610583 [1] [2] 1.70494972816824730266 - 1.70494972816824685857 [2] [3] -1.30816936163866004428 | -1.30816936163866004428 [3] [4] -1.54648935125468289797 - -1.54648935125468334206 [4] [5] -1.21515897047838583589 - -1.21515897047838561384 [5] [6] 1.90944881941350264043 | 1.90944881941350264043 [6] [7] -1.30741860928466357983 - -1.30741860928466335778 [7] [8] -0.27268288804536972014 - -0.27268288804536938708 [8] [9] 0.64746395543071677547 | 0.64746395543071677547 [9] [10] -1.59401796399692141648 | -1.59401796399692141648 [10] ... ... ... and 130 more ... ── Failure ('test-probit-default.R:49:5'): initialization aliases preserve starts, fitted models and updates ── Expected `coef(actual)` to be identical to `coef(expected)`. Differences: actual | expected [1] 0.10427605291394217 | 0.10427605291394217 [1] [2] 0.38006900521398351 | 0.38006900521398351 [2] [3] 0.50890873815272220 - 0.50890873815272231 [3] [4] 0.40874509091470007 - 0.40874509091470018 [4] [5] 1.00000000000000000 | 1.00000000000000000 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 0.00000000000000000 | 0.00000000000000000 [7] ── Failure ('test-probit-default.R:50:5'): initialization aliases preserve starts, fitted models and updates ── Expected `actual$loglik_by_unit` to be identical to `expected$loglik_by_unit`. Differences: actual | expected [3] -4.28834686037374890 | -4.28834686037374890 [3] [4] -4.65337734948295001 | -4.65337734948295001 [4] [5] -3.91868023438880497 | -3.91868023438880497 [5] [6] -13.82579836945283880 - -13.82579836945284057 [6] [7] -3.81659330213863779 | -3.81659330213863779 [7] [8] -7.18761523713859063 | -7.18761523713859063 [8] [9] -7.83883692170455504 | -7.83883692170455504 [9] actual | expected [17] -10.40583335745954585 | -10.40583335745954585 [17] [18] -9.86486963507086934 | -9.86486963507086934 [18] [19] -3.49564268642652598 | -3.49564268642652598 [19] [20] -4.96386696320875132 - -4.96386696320875220 [20] ── Failure ('test-probit-default.R:51:5'): initialization aliases preserve starts, fitted models and updates ── Expected `actual$score` to be identical to `expected$score`. Differences: actual | expected [17] 0.0302300227304639277 | 0.0302300227304639277 [17] [18] 0.9814617418757188849 | 0.9814617418757188849 [18] [19] -0.3346031158566544761 | -0.3346031158566544761 [19] [20] 0.0048055154500605771 - 0.0048055154500603551 [20] [21] 1.7522613587464419549 | 1.7522613587464419549 [21] [22] 0.8254408197721242457 | 0.8254408197721242457 [22] [23] 1.2206238513148421898 | 1.2206238513148421898 [23] [24] -0.4127396603348102433 | -0.4127396603348102433 [24] [25] 0.1404459703711119778 | 0.1404459703711119778 [25] [26] -0.1278631047496876783 - -0.1278631047496876505 [26] ... ... ... and 3 more ... actual | expected [37] -0.1687808572118415507 | -0.1687808572118415507 [37] [38] 0.4011066516925400616 | 0.4011066516925400616 [38] [39] 2.0451848945112205413 | 2.0451848945112205413 [39] [40] 1.4984733439289090740 - 1.4984733439289086299 [40] [41] -0.0032482873217200554 - -0.0032482873217203607 [41] [42] 0.8406954600852722947 - 0.8406954600852718507 [42] [43] -0.1959134768732883336 | -0.1959134768732883336 [43] [44] -0.3856929299494448182 - -0.3856929299494449292 [44] [45] -0.6973114083313854961 | -0.6973114083313854961 [45] [46] -5.9971440032966931710 - -5.9971440032966967237 [46] ... ... ... and 37 more ... actual | expected [98] 0.6154614017090388467 | 0.6154614017090388467 [98] [99] -0.2175657401120266732 | -0.2175657401120266732 [99] [100] -0.5829549582056852142 | -0.5829549582056852142 [100] [101] -0.6776910732337644294 - -0.6776910732337642074 [101] [102] -0.7962288865401896398 - -0.7962288865401893068 [102] [103] -0.8288311733508434420 | -0.8288311733508434420 [103] [104] -0.3917606644355510759 - -0.3917606644355509093 [104] [105] 0.0976934048546002770 | 0.0976934048546002770 [105] [106] -4.7594517398401654518 - -4.7594517398401663399 [106] [107] 0.3115057398095537056 - 0.3115057398095538721 [107] ... ... ... and 33 more ... ── Failure ('test-probit-default.R:54:5'): initialization aliases preserve starts, fitted models and updates ── Expected `coef(restarted)` to be identical to `coef(expected)`. Differences: actual | expected [1] 0.10427605291394217 | 0.10427605291394217 [1] [2] 0.38006900521398351 | 0.38006900521398351 [2] [3] 0.50890873815272220 - 0.50890873815272231 [3] [4] 0.40874509091470007 - 0.40874509091470018 [4] [5] 1.00000000000000000 | 1.00000000000000000 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 0.00000000000000000 | 0.00000000000000000 [7] ── Failure ('test-probit-default.R:60:5'): initialization aliases preserve starts, fitted models and updates ── Expected `coef(updated)` to be identical to `coef(expected)`. Differences: actual | expected [1] 0.10427605291394217 | 0.10427605291394217 [1] [2] 0.38006900521398351 | 0.38006900521398351 [2] [3] 0.50890873815272220 - 0.50890873815272231 [3] [4] 0.40874509091470007 - 0.40874509091470018 [4] [5] 1.00000000000000000 | 1.00000000000000000 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 0.00000000000000000 | 0.00000000000000000 [7] ── Failure ('test-probit-default.R:64:5'): initialization aliases preserve starts, fitted models and updates ── Expected `coef(carried)` to be identical to `coef(expected)`. Differences: actual | expected [1] 0.10427605291394217 | 0.10427605291394217 [1] [2] 0.38006900521398351 | 0.38006900521398351 [2] [3] 0.50890873815272231 | 0.50890873815272231 [3] [4] 0.40874509091470007 - 0.40874509091470018 [4] [5] 1.00000000000000000 | 1.00000000000000000 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 0.00000000000000000 | 0.00000000000000000 [7] ── Failure ('test-probit-default.R:80:3'): fixed zero scales and one-row probit panels skip auxiliaries without a warning ── Expected `one` to be identical to `starts(single, c(cor_re = 0.5), fit_control(init = "pooled"))`. Differences: actual | expected [1] 0.584152100197690816 - 0.584152100197690483 [1] [2] 1.081003147988403912 | 1.081003147988403912 [2] [3] 0.075825758801344761 - 0.075825758801344817 [3] [4] 1.209889899436144223 | 1.209889899436144223 [4] [5] 1.000000000000000000 | 1.000000000000000000 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] ── Failure ('test-probit-initialization.R:87:5'): modern binary auxiliary nonconvergence preserves only the failed equation starts ── Expected `actual[failed_names]` to be identical to `pooled[failed_names]`. Differences: actual | expected [1] 0.279891664179545585 - 0.279891664179545641 [1] [2] 3.039650728306725114 - 3.039650728306724670 [2] [3] 0.368635742890372542 - 0.368635742890373652 [3] [4] -0.143994778279066288 - -0.143994778279066343 [4] [5] 0.619999999999999996 | 0.619999999999999996 [5] ── Failure ('test-probit-initialization.R:173:5'): complete starts and inapplicable routes bypass RE auxiliaries ── Expected `initial_parameters(...)` to be identical to `expected`. Differences: actual | expected [1] -0.264211723771385132 | -0.264211723771385132 [1] [2] 3.744634840470446591 - 3.744634840470445702 [2] [3] -0.563866749077882035 - -0.563866749077881479 [3] [4] -0.109617828622790708 - -0.109617828622790667 [4] [5] 0.241471424238860394 - 0.241471424238860449 [5] [6] 2.559394307149684966 | 2.559394307149684966 [6] [7] 0.340318934851342680 - 0.340318934851343013 [7] [8] -0.123468953599908782 - -0.123468953599908809 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-probit-initialization.R:173:5'): complete starts and inapplicable routes bypass RE auxiliaries ── Expected `initial_parameters(...)` to be identical to `expected`. Differences: actual | expected [1] 0.48319110058524944 | 0.48319110058524944 [1] [2] 3.85083931008759528 | 3.85083931008759528 [2] [3] 0.37796626677870843 | 0.37796626677870843 [3] [4] -0.38980657636090116 - -0.38980657636090105 [4] [5] 1.00000000000000000 | 1.00000000000000000 [5] ── Failure ('test-probit-initialization.R:191:3'): a supplied complete equation block is skipped and failure preserves pooled starts ── Expected `actual` to be identical to `pooled`. Differences: actual | expected [3] -0.85860091822462770 | -0.85860091822462770 [3] [4] -0.15478820374877311 | -0.15478820374877311 [4] [5] 0.33165497760503992 | 0.33165497760503992 [5] [6] 3.68628153310412854 - 3.68628153310412943 [6] [7] 0.40699531834998431 | 0.40699531834998431 [7] [8] -0.17162748017505983 - -0.17162748017506022 [8] [9] 1.00000000000000000 | 1.00000000000000000 [9] [10] 1.00000000000000000 | 1.00000000000000000 [10] [11] 0.00000000000000000 | 0.00000000000000000 [11] ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214702 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025985870 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] error ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214785 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984982 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250677 | -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] nonconverged ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214806 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984982 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250677 | -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] unnamed ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214688 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984982 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] duplicate ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.0494399070852147779 - 0.0494399070852147710 [1] [2] -0.2000000000000000111 | -0.2000000000000000111 [2] [3] -4.6640651030259840937 | -4.6640651030259840937 [3] [4] 0.1000000000000000056 | 0.1000000000000000056 [4] [5] -1.1795526908972513436 - -1.1795526908972506774 [5] [6] 1.0000000000000000000 | 1.0000000000000000000 [6] [7] 0.4000000000000000222 | 0.4000000000000000222 [7] unknown ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214736 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984094 | -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] nonfinite ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214736 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984094 | -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] negative_sd ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214702 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025985870 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] zero_free_sd ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214736 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984094 | -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] changed_fixed ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.04943990708521492 - 0.04943990708521477 [1] [2] -0.20000000000000001 | -0.20000000000000001 [2] [3] -4.66406510302598409 | -4.66406510302598409 [3] [4] 0.10000000000000001 | 0.10000000000000001 [4] [5] -1.17955269089725090 - -1.17955269089725068 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 0.40000000000000002 | 0.40000000000000002 [7] character ── Failure ('test-re-initialization.R:137:5'): invalid auxiliary results fall back only for the affected equation ── Expected `result$value[failed_block]` to be identical to `pooled[failed_block]`. Differences: actual | expected [1] 0.049439907085214688 - 0.049439907085214771 [1] [2] -0.200000000000000011 | -0.200000000000000011 [2] [3] -4.664065103025984982 - -4.664065103025984094 [3] [4] 0.100000000000000006 | 0.100000000000000006 [4] [5] -1.179552690897250899 - -1.179552690897250677 [5] [6] 1.000000000000000000 | 1.000000000000000000 [6] [7] 0.400000000000000022 | 0.400000000000000022 [7] matrix ── Failure ('test-re-initialization.R:182:3'): the Gaussian auxiliary receives original designs, offsets and natural restrictions ── Expected `call$start` to be identical to `pooled[block]`. Differences: actual | expected [1] 0.289755535048193902 - 0.289755535048193680 [1] [2] 0.230000000000000010 | 0.230000000000000010 [2] [3] -2.640570383341509952 - -2.640570383341510841 [3] [4] -0.200000000000000011 | -0.200000000000000011 [4] [5] -0.104256036630887450 - -0.104256036630887394 [5] [6] 0.650000000000000022 | 0.650000000000000022 [6] [7] 0.699999999999999956 | 0.699999999999999956 [7] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.27271921774661601 - 0.27271921774661612 [1] [2] 1.97657761009218591 - 1.97657761009218613 [2] [3] -0.49457429771279116 - -0.49457429771279127 [3] [4] -0.87007988689506510 - -0.87007988689506521 [4] [5] -0.04272340420960409 | -0.04272340420960409 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.01609685151076779 - 0.01609685151076800 [1] [2] 1.31318205810034883 | 1.31318205810034883 [2] [3] -0.48030903689235499 - -0.48030903689235438 [3] [4] -0.10250356904948156 - -0.10250356904948188 [4] [5] -0.50586674521202080 - -0.50586674521202135 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.01609685151076779 - 0.01609685151076800 [1] [2] 1.31318205810034883 | 1.31318205810034883 [2] [3] -0.48030903689235499 - -0.48030903689235438 [3] [4] -0.10250356904948156 - -0.10250356904948188 [4] [5] -0.50586674521202080 - -0.50586674521202135 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.01609685151076818 - 0.01609685151076800 [1] [2] 1.31318205810034905 - 1.31318205810034883 [2] [3] -0.48030903689235427 - -0.48030903689235438 [3] [4] -0.10250356904948210 - -0.10250356904948188 [4] [5] -0.50586674521202168 - -0.50586674521202135 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.01609685151076779 - 0.01609685151076800 [1] [2] 1.31318205810034883 | 1.31318205810034883 [2] [3] -0.48030903689235499 - -0.48030903689235438 [3] [4] -0.10250356904948156 - -0.10250356904948188 [4] [5] -0.50586674521202080 - -0.50586674521202135 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.01609685151076800 - 0.01609685151076779 [1] [2] 1.31318205810034883 | 1.31318205810034883 [2] [3] -0.48030903689235438 - -0.48030903689235499 [3] [4] -0.10250356904948188 - -0.10250356904948156 [4] [5] -0.50586674521202135 - -0.50586674521202080 [5] [6] 1.00000000000000000 | 1.00000000000000000 [6] [7] 1.00000000000000000 | 1.00000000000000000 [7] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087434 - 0.382617653823087378 [1] [2] -0.098886366332722728 - -0.098886366332722672 [2] [3] 0.053493082449038123 - 0.053493082449038255 [3] [4] 1.022478757772021796 - 1.022478757772020908 [4] [5] -5.306689495096354570 - -5.306689495096353681 [5] [6] -0.623971038485362950 - -0.623971038485363061 [6] [7] -0.202645691701627939 - -0.202645691701628300 [7] [8] 0.000000000000000000 | 0.000000000000000000 [8] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087434 - 0.382617653823087378 [1] [2] -0.098886366332722728 - -0.098886366332722672 [2] [3] 0.053493082449038123 - 0.053493082449038255 [3] [4] 1.022478757772021796 - 1.022478757772020908 [4] [5] -5.306689495096354570 - -5.306689495096353681 [5] [6] -0.623971038485362950 - -0.623971038485363061 [6] [7] -0.202645691701627939 - -0.202645691701628300 [7] [8] 0.000000000000000000 | 0.000000000000000000 [8] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 | 0.382617653823087378 [1] [2] -0.098886366332722672 | -0.098886366332722672 [2] [3] 0.053493082449038332 - 0.053493082449038255 [3] [4] 1.022478757772020019 - 1.022478757772020908 [4] [5] -5.306689495096355458 - -5.306689495096353681 [5] [6] -0.623971038485363394 - -0.623971038485363061 [6] [7] -0.202645691701628328 - -0.202645691701628300 [7] [8] 0.000000000000000000 | 0.000000000000000000 [8] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 | 0.382617653823087378 [1] [2] -0.098886366332722672 | -0.098886366332722672 [2] [3] 0.053493082449038332 - 0.053493082449038255 [3] [4] 1.022478757772020019 - 1.022478757772020908 [4] [5] -5.306689495096355458 - -5.306689495096353681 [5] [6] -0.623971038485363394 - -0.623971038485363061 [6] [7] -0.202645691701628328 - -0.202645691701628300 [7] [8] 0.000000000000000000 | 0.000000000000000000 [8] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 - 0.382617653823087434 [1] [2] -0.098886366332722672 - -0.098886366332722728 [2] [3] 0.289755535048193680 | 0.289755535048193680 [3] [4] 0.585599811022379124 | 0.585599811022379124 [4] [5] -2.640570383341510841 | -2.640570383341510841 [5] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 - 0.382617653823087434 [1] [2] -0.098886366332722672 - -0.098886366332722728 [2] [3] 0.289755535048193680 | 0.289755535048193680 [3] [4] 0.585599811022379124 | 0.585599811022379124 [4] [5] -2.640570383341510841 | -2.640570383341510841 [5] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 - 0.382617653823087434 [1] [2] -0.098886366332722672 - -0.098886366332722728 [2] [3] 0.289755535048193902 - 0.289755535048193680 [3] [4] 0.585599811022378569 - 0.585599811022379124 [4] [5] -2.640570383341509952 - -2.640570383341510841 [5] [6] -0.791496666884329514 - -0.791496666884329181 [6] [7] -0.104256036630887450 - -0.104256036630887394 [7] [8] 0.560126075530872791 | 0.560126075530872791 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 - 0.382617653823087434 [1] [2] -0.098886366332722672 - -0.098886366332722728 [2] [3] 0.049439907085214875 - 0.049439907085214722 [3] [4] 0.671343990995545092 - 0.671343990995545647 [4] [5] -4.664065103025984982 | -4.664065103025984982 [5] [6] -0.604958178513845923 - -0.604958178513845701 [6] [7] -1.179552690897251344 | -1.179552690897251344 [7] [8] 1.000000000000000000 | 1.000000000000000000 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087434 | 0.382617653823087434 [1] [2] -0.098886366332722728 | -0.098886366332722728 [2] [3] 0.049439907085214702 - 0.049439907085214722 [3] [4] 0.671343990995544870 - 0.671343990995545647 [4] [5] -4.664065103025985870 - -4.664065103025984982 [5] [6] -0.604958178513845812 - -0.604958178513845701 [6] [7] -1.179552690897250899 - -1.179552690897251344 [7] [8] 1.000000000000000000 | 1.000000000000000000 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087378 - 0.382617653823087434 [1] [2] -0.098886366332722672 - -0.098886366332722728 [2] [3] 0.049439907085214750 - 0.049439907085214722 [3] [4] 0.671343990995544870 - 0.671343990995545647 [4] [5] -4.664065103025984982 | -4.664065103025984982 [5] [6] -0.604958178513846034 - -0.604958178513845701 [6] [7] -1.179552690897250899 - -1.179552690897251344 [7] [8] 1.000000000000000000 | 1.000000000000000000 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-re-initialization.R:244:5'): standalone, cross-sectional and complete-start routes never recurse into auxiliaries ── Expected `initial_parameters(f$prepared, f$info, NULL, numeric(), fit_control(init = method))` to be identical to `pooled`. Differences: actual | expected [1] 0.382617653823087434 | 0.382617653823087434 [1] [2] -0.098886366332722728 | -0.098886366332722728 [2] [3] 0.049439907085214702 - 0.049439907085214722 [3] [4] 0.671343990995544981 - 0.671343990995545647 [4] [5] -4.664065103025985870 - -4.664065103025984982 [5] [6] -0.604958178513846034 - -0.604958178513845701 [6] [7] -1.179552690897250899 - -1.179552690897251344 [7] [8] 1.000000000000000000 | 1.000000000000000000 [8] [9] 0.000000000000000000 | 0.000000000000000000 [9] ── Failure ('test-saved-objects.R:184:3'): every method treats a historical fit as the current fit ── Expected `timeless(...)` to be identical to `timeless(...)`. Differences: actual$loglik | expected$loglik [1] -10.10039885586935782 | -10.10039885586935782 [1] [2] -3.24159125483733268 - -3.24159125483733312 [2] [3] -2.89465297728714521 | -2.89465297728714521 [3] [4] -3.37965917063330679 | -3.37965917063330679 [4] [5] -4.58475365485730357 | -4.58475365485730357 [5] actual$score | expected$score [1] 2.493413743913340141 | 2.493413743913340141 [1] [2] -0.796854458579451808 - -0.796854458579451919 [2] [3] -1.301718344361346036 - -1.301718344361345814 [3] [4] -0.194788251504898202 | -0.194788251504898202 [4] [5] 0.273590677642142399 - 0.273590677642142510 [5] [6] -0.473643661050524911 | -0.473643661050524911 [6] [7] -2.167817163054414742 | -2.167817163054414742 [7] [8] -0.096915820099770345 - -0.096915820099770372 [8] [9] 0.082296029198408657 | 0.082296029198408657 [9] [10] -0.065413528877203628 | -0.065413528877203628 [10] ... ... ... and 8 more ... actual$reference_score | expected$reference_score [2] -0.796854507669285894 | -0.796854507669285894 [2] [3] -1.301718338309215239 | -1.301718338309215239 [3] [4] -0.194788243670823730 | -0.194788243670823730 [4] [5] 0.273591211128634215 - 0.273591211128634160 [5] [6] -0.473643635630990045 - -0.473643635630990101 [6] [7] -2.167817154970783200 | -2.167817154970783200 [7] [8] -0.096915848851994002 | -0.096915848851994002 [8] [9] 0.082296032155023915 | 0.082296032155023915 [9] [10] -0.065413527555913759 | -0.065413527555913759 [10] [11] 2.365439133698759022 | 2.365439133698759022 [11] ... ... ... and 7 more ... `actual$diagnostics$panels[[2]]$loglik`: -3.24159125483733268 `expected$diagnostics$panels[[2]]$loglik`: -3.24159125483733312 actual$diagnostics$panels[[2]]$score vs expected$diagnostics$panels[[2]]$score - -0.796854458579451808 + -0.796854458579451919 - -0.096915820099770345 + -0.096915820099770372 - -0.436714255501111925 + -0.436714255501111981 `actual$diagnostics$panels[[2]]$loglik_error`: 0.000000008378163520 `expected$diagnostics$panels[[2]]$loglik_error`: 0.000000008378163617 actual$diagnostics$panels[[2]]$score_error vs expected$diagnostics$panels[[2]]$score_error - 0.000000058652308953 + 0.000000058652309070 - 0.000000030193033035 + 0.000000030193033066 - 0.000000108637608034 + 0.000000108637608052 actual$diagnostics$panels[[2]]$cell_error[6:12] vs expected$diagnostics$panels[[2]]$cell_error[6:12] 0.000000000048580084 0.000000000000137779 0.000000000000000000 - 0.000000000000000000 + 0.000000000000000097 0.000000004797242754 0.000000000000000000 0.000000000000000000 actual$diagnostics$panels[[3]]$score vs expected$diagnostics$panels[[3]]$score - -1.301718344361346036 + -1.301718344361345814 0.082296029198408657 - 0.280477257370210120 + 0.280477257370210176 actual$diagnostics$panels[[3]]$reference_score vs expected$diagnostics$panels[[3]]$reference_score -1.30171833830921524 0.08229603215502392 - 0.28047721392205532 + 0.28047721392205521 `actual$diagnostics$panels[[3]]$loglik_error`: 0.00000000513816515 `expected$diagnostics$panels[[3]]$loglik_error`: 0.00000000513816531 actual$diagnostics$panels[[3]]$score_error vs expected$diagnostics$panels[[3]]$score_error - 0.000000032636181768 + 0.000000032636181789 - 0.000000016332235462 + 0.000000016332235472 - 0.000000043885348373 + 0.000000043885348528 actual$diagnostics$panels[[3]]$outer_tail_score vs expected$diagnostics$panels[[3]]$outer_tail_score - 0.000000000000000000000000000000189259744086057914 + 0.000000000000000000000000000000189259744086057892 0.000000000000000000000000000000087602477821961515 0.000000000000000000000000000001294540400872599668 actual$diagnostics$panels[[3]]$cell_error[5:11] vs expected$diagnostics$panels[[3]]$cell_error[5:11] 0.00000000476048845 0.00000000000956557 0.00000000000000000 - 0.00000000000013406 + 0.00000000000013423 0.00000000000000008 0.00000000028776664 0.00000000000000000 `actual$diagnostics$panels[[4]]$loglik_error`: 0.000000026577981943 `expected$diagnostics$panels[[4]]$loglik_error`: 0.000000026577982040 actual$diagnostics$panels[[4]]$score_error vs expected$diagnostics$panels[[4]]$score_error - 0.0000000237956657505 + 0.0000000237956657701 - 0.0000000040196952712 + 0.0000000040196952802 - 0.0000003284701480551 + 0.0000003284701481381 actual$diagnostics$panels[[4]]$cell_error[3:11] vs expected$diagnostics$panels[[4]]$cell_error[3:11] 0.0000000000000002495 0.0000000000069514416 0.0000000019056996901 - 0.0000000000000000000 + 0.0000000000000000052 - 0.0000000000000000056 + 0.0000000000000000000 - 0.0000000000000000000 + 0.0000000000000000971 0.0000000245644857480 0.0000000000000000316 0.0000000000000000000 actual$diagnostics$panels[[5]]$score vs expected$diagnostics$panels[[5]]$score - 0.27359067764214240 + 0.27359067764214251 - 2.36543902729544397 + 2.36543902729544442 - -0.89242073475182715 + -0.89242073475182770 actual$diagnostics$panels[[5]]$reference_score vs expected$diagnostics$panels[[5]]$reference_score - 0.273591211128634215 + 0.273591211128634160 2.365439133698759022 - -0.892419231834114646 + -0.892419231834114757 `actual$diagnostics$panels[[5]]$loglik_error`: 0.000000015972780292 `expected$diagnostics$panels[[5]]$loglik_error`: 0.000000015972780243 actual$diagnostics$panels[[5]]$score_error vs expected$diagnostics$panels[[5]]$score_error - 0.000000543158970015 + 0.000000543158969711 - 0.000000182027580639 + 0.000000182027580385 - 0.000001503738681080 + 0.000001503738681141 actual$diagnostics$panels[[5]]$outer_tail_score vs expected$diagnostics$panels[[5]]$outer_tail_score - 0.00000000000000000000000000000104583926316188199 + 0.00000000000000000000000000000104583926316188216 0.00000000000000000000000000000173189041696306898 0.00000000000000000000000000001179599409267225595 actual$diagnostics$panels[[5]]$cell_error[3:9] vs expected$diagnostics$panels[[5]]$cell_error[3:9] 0.000000000000000011 0.000000000002045137 0.000000000585034532 - 0.000000000036029645 + 0.000000000036029596 0.000000000000269063 0.000000000000000000 0.000000000030316860 actual$diagnostics$panels[[6]]$score vs expected$diagnostics$panels[[6]]$score -0.473643661050524911 - -0.117510534271229566 + -0.117510534271229664 - -0.632616512744342052 + -0.632616512744341941 actual$diagnostics$panels[[6]]$reference_score vs expected$diagnostics$panels[[6]]$reference_score - -0.473643635630990045 + -0.473643635630990101 - -0.117510549533966113 + -0.117510549533966072 - -0.632616343998201214 + -0.632616343998201325 `actual$diagnostics$panels[[6]]$loglik_error`: 0.000000013304657510 `expected$diagnostics$panels[[6]]$loglik_error`: 0.000000013304657444 actual$diagnostics$panels[[6]]$score_error vs expected$diagnostics$panels[[6]]$score_error - 0.0000000336789584234 + 0.0000000336789583852 - 0.0000000233277071251 + 0.0000000233277071169 - 0.0000001923904578905 + 0.0000001923904578486 actual$diagnostics$panels[[6]]$outer_tail_score vs expected$diagnostics$panels[[6]]$outer_tail_score 0.000000000000000000000000000000237049970650324701 - 0.000000000000000000000000000000202578815311736406 + 0.000000000000000000000000000000202578815311736450 0.000000000000000000000000000002410475034126154209 actual$diagnostics$panels[[6]]$cell_error[5:12] vs expected$diagnostics$panels[[6]]$cell_error[5:12] 0.000000002532316298 0.000000000030149577 0.000000000000154765 - 0.000000000000000000 + 0.000000000000000017 - 0.000000000000000083 + 0.000000000000000000 0.000000010685798891 0.000000000000000254 0.000000000000000000 `actual$diagnostics$aggregate_loglik_error`: 0.00000007262016273 `expected$diagnostics$aggregate_loglik_error`: 0.00000007262016297 actual$diagnostics$aggregate_score_error vs expected$diagnostics$aggregate_score_error - 0.00000075353635706 + 0.00000075353635687 - 0.00000027882917580 + 0.00000027882917558 - 0.00000139921187361 + 0.00000139921187377 actual$diagnostics$finite_prior_absolute_moment[1:6] vs expected$diagnostics$finite_prior_absolute_moment[1:6] 0.79788456080286529 0.79788456080286518 - 0.79788456080286518 + 0.79788456080286507 0.79788456080286518 0.79788456080286518 0.79788456080286518 [ FAIL 72 | WARN 0 | SKIP 0 | PASS 7095 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [15s/18s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/PanelSelect.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 6:41.98, 348.55 + 10.95