* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/OpenSpecy.Rcheck’
* using R Under development (unstable) (2026-10-05 r90641)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-06 03:30:16 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘OpenSpecy/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenSpecy’ version ‘2.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenSpecy’ can be installed ... [34s/105s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/10s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/12s] OK
* checking whether the package can be unloaded cleanly ... [4s/14s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/11s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/13s] OK
* checking loading without being on the library search path ... [4s/12s] OK
* checking whether startup messages can be suppressed ... [4s/11s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [71s/172s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/17s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [124s/192s]
 [124s/192s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(OpenSpecy)
  > 
  > library(data.table)
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  > setDTthreads(2)
  > 
  > test_check("OpenSpecy")
  Particle analysis [file-backed source]: read into memory (1 regions; 16 spectra; 4 bands)
  Particle analysis [Region1]: memory materialization (region 1/1; 16 spectra)
  Particle analysis [Region1]: memory materialization complete (elapsed 0.0 s)
  Particle analysis [Region1]: read (sample 1 of 1)
  Particle analysis [Region1]: signal/noise
  Particle analysis [Region1]: particle detection and collapse
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [file-backed source]: read into memory (1 regions; 16 spectra; 4 bands)
  Particle analysis [Region1]: memory materialization (region 1/1; 16 spectra)
  Particle analysis [Region1]: memory materialization complete (elapsed 0.0 s)
  Particle analysis [Region1]: read (sample 1 of 1)
  Particle analysis [Region1]: signal/noise
  Particle analysis [Region1]: particle detection and collapse
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: reuse cached particle means
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: reuse cached particle means
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means
  FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
  Particle analysis [Region1]: streaming particle means (chunk 1/1; 4/4 spectra (100%); elapsed 0.0 s)
  FileSpecs collapse complete in 0.03 seconds.
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means
  FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
  Particle analysis [Region1]: streaming particle means (chunk 1/1; 4/4 spectra (100%); elapsed 0.0 s)
  FileSpecs collapse complete in 0.03 seconds.
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
  FileSpecs collapse complete in 0.04 seconds.
  FileSpecs collapse: 16 source spectra; 4 retained; 2 connected units.
  FileSpecs collapse complete in 0.04 seconds.
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means
  FileSpecs collapse: 16 source spectra; 16 retained; 1 connected units.
  Particle analysis [Region1]: streaming particle means (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
  FileSpecs collapse complete in 0.04 seconds.
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/1; 16/16 spectra (100%); elapsed 0.0 s)
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/6; 3/16 spectra (18%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 2/6; 6/16 spectra (37%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 3/6; 9/16 spectra (56%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 4/6; 12/16 spectra (75%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 5/6; 15/16 spectra (93%); elapsed 0.1 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 6/6; 16/16 spectra (100%); elapsed 0.1 s)
  Particle analysis [Region1]: streaming pixel identification
  Particle analysis [Region1]: streaming pixel identification (chunk 1/2; 3/4 spectra (75%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming pixel identification (chunk 2/2; 4/4 spectra (100%); elapsed 0.5 s)
  Particle analysis [Region1]: streaming particle means
  FileSpecs collapse: 16 source spectra; 4 retained; 1 connected units.
  Particle analysis [Region1]: streaming particle means (chunk 1/2; 3/4 spectra (75%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means (chunk 2/2; 4/4 spectra (100%); elapsed 0.0 s)
  FileSpecs collapse complete in 0.09 seconds.
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  Particle analysis [Region1]: region (1 of 1)
  Particle analysis [Region1]: index
  Particle analysis [Region1]: streaming signal/noise (16 spectra)
  Particle analysis [Region1]: streaming signal/noise (chunk 1/4; 4/16 spectra (25%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 2/4; 8/16 spectra (50%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 3/4; 12/16 spectra (75%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming signal/noise (chunk 4/4; 16/16 spectra (100%); elapsed 0.1 s)
  Particle analysis [Region1]: streaming particle means
  FileSpecs collapse: 16 source spectra; 12 retained; 1 connected units.
  Particle analysis [Region1]: streaming particle means (chunk 1/4; 2/12 spectra (16%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means (chunk 2/4; 6/12 spectra (50%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means (chunk 3/4; 10/12 spectra (83%); elapsed 0.0 s)
  Particle analysis [Region1]: streaming particle means (chunk 4/4; 12/12 spectra (100%); elapsed 0.0 s)
  FileSpecs collapse complete in 0.08 seconds.
  Particle analysis [Region1]: library matching
  Particle analysis [Region1]: outputs
  Particle analysis [Region1]: complete
  Particle analysis [particle-map]: read (sample 1 of 1)
  Particle analysis [particle-map]: signal/noise
  Particle analysis [particle-map]: particle detection and collapse
  Particle analysis [particle-map]: library matching
  Particle analysis [particle-map]: outputs
  Particle analysis [particle-map]: complete
  split_h5: copying Region2 (2/2)
  split_h5: copying 10 (4 spectra in 1 region(s); 2/2)
  split_h5: reading 2 (4 spectra; 2/2)
  
  Attaching package: 'shinyjs'
  
  The following object is masked from 'package:shiny':
  
      runExample
  
  The following objects are masked from 'package:methods':
  
      removeClass, show
  
  
  Attaching package: 'shinyWidgets'
  
  The following object is masked from 'package:shinyjs':
  
      alert
  
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:data.table':
  
      between, first, last
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  Loading required package: ggplot2
  
  Attaching package: 'plotly'
  
  The following object is masked from 'package:ggplot2':
  
      last_plot
  
  The following object is masked from 'package:stats':
  
      filter
  
  The following object is masked from 'package:graphics':
  
      layout
  
  
  Attaching package: 'DT'
  
  The following objects are masked from 'package:shiny':
  
      dataTableOutput, renderDataTable
  
  
  Attaching package: 'bs4Dash'
  
  The following object is masked from 'package:shinyWidgets':
  
      progressBar
  
  The following objects are masked from 'package:shiny':
  
      actionButton, column, insertTab, navbarMenu, tabsetPanel
  
  The following object is masked from 'package:graphics':
  
      box
  
  
  Attaching package: 'reshape2'
  
  The following objects are masked from 'package:data.table':
  
      dcast, melt
  
  No trace type specified:
    Based on info supplied, a 'scatter' trace seems appropriate.
    Read more about this trace type -> https://plotly.com/r/reference/#scatter
  No scatter mode specifed:
    Setting the mode to markers
    Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: particle detection and collapse
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  Particle analysis [particle-sample-a-17c416554f79fd]: read (sample 1 of 2)
  Particle analysis [particle-sample-a-17c416554f79fd]: signal/noise
  Particle analysis [particle-sample-a-17c416554f79fd]: particle detection and collapse
  Particle analysis [particle-sample-a-17c416554f79fd]: library matching
  Particle analysis [particle-sample-a-17c416554f79fd]: outputs
  Particle analysis [particle-sample-a-17c416554f79fd]: complete
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: read (sample 2 of 2)
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: signal/noise
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: particle detection and collapse
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: library matching
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: outputs
  Particle analysis [particle-sample-b-17c4162ad1ce2d]: complete
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: particle detection and collapse
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  S/N thresholds retained every map pixel in 'sample_1'; continuing with particle_id_strategy = 'all_cell_id'.
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  Particle analysis [small]: read (sample 1 of 1)
  Particle analysis [small]: signal/noise
  Particle analysis [small]: particle detection and collapse
  Particle analysis [small]: library matching
  Particle analysis [small]: outputs
  Particle analysis [small]: complete
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  Particle analysis [sample_1]: read (sample 1 of 1)
  Particle analysis [sample_1]: signal/noise
  Particle analysis [sample_1]: library matching
  Particle analysis [sample_1]: outputs
  Particle analysis [sample_1]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/2 (raw)
  build_lib [0.0s]: processing recipe 2/2 (relative)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: restricting the wavenumber range
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: restricting the wavenumber range
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 2 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 2 source object(s)
  build_lib [0.0s]: preparing source object 1/2
  build_lib [0.0s]: preparing source object 2/2
  build_lib [0.0s]: combining 2 same-axis source object(s)
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: standardized source keys (filled=2; conflicts=0)
  build_lib [0.1s]: processing recipe 1/1 (raw)
  build_lib [0.1s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: joining metadata lookup 1/1
  build_lib [0.0s]: metadata lookup 1/1 complete (matched=8; unmatched=0)
  build_lib [0.0s]: joining the material hierarchy
  build_lib [0.0s]: material hierarchy complete (unmatched=0)
  build_lib [0.1s]: processing recipe 1/3 (raw)
  build_lib [0.1s]: calculating signal-to-noise (raw)
  build_lib [0.1s]: assessing spectra (raw)
  build_lib [0.1s]: processing recipe 2/3 (derivative)
  build_lib [0.1s]: calculating signal-to-noise (derivative)
  build_lib [0.1s]: assessing spectra (derivative)
  build_lib [0.1s]: processing recipe 3/3 (nobaseline)
  build_lib [0.1s]: calculating signal-to-noise (nobaseline)
  build_lib [0.1s]: assessing spectra (nobaseline)
  build_lib [0.1s]: complete
  Saving _problems/test-build_lib-913.R
  build_lib [0.0s]: starting
  build_lib [0.0s]: using one in-memory OpenSpecy source
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: joining metadata lookup 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.1s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using one in-memory OpenSpecy source
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: joining metadata lookup 1/1
  build_lib [0.0s]: processing recipe 1/1 (raw)
  build_lib [0.1s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 2 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 2 source object(s)
  build_lib [0.0s]: preparing source object 1/2
  build_lib [0.0s]: preparing source object 2/2
  build_lib [0.0s]: merging 2 source object(s) with c_spec()
  build_lib [0.1s]: processing recipe 1/3 (raw)
  build_lib [0.1s]: processing recipe 2/3 (derivative)
  build_lib [0.1s]: processing recipe 3/3 (nobaseline)
  build_lib [0.2s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: using 1 in-memory OpenSpecy source(s)
  build_lib [0.0s]: preparing 1 source object(s)
  build_lib [0.0s]: preparing source object 1/1
  build_lib [0.0s]: processing recipe 1/1 (nobaseline)
  build_lib [0.0s]: complete
  build_lib [0.0s]: starting
  build_lib [0.0s]: reading path 1/3 (raman_hdpe.csv)
  build_lib [0.6s]: reading path 2/3 (ftir_ldpe_soil.asp)
  build_lib [1.2s]: reading path 3/3 (raman_atacamit.spc)
  build_lib [1.7s]: streamed 3 source object(s) from 3 path(s)
  build_lib [1.7s]: merging 3 source object(s) with c_spec()
  build_lib [2.1s]: joining metadata lookup 1/1
  build_lib [2.1s]: metadata lookup 1/1 complete (matched=3; unmatched=0)
  build_lib [2.1s]: processing recipe 1/1 (raw)
  build_lib [2.1s]: complete
  object 'x' needs to be a list of 'OpenSpecy' objects; nothing to concatenate, returning 'x'
  No trace type specified:
    Based on info supplied, a 'scatter' trace seems appropriate.
    Read more about this trace type -> https://plotly.com/r/reference/#scatter
  No scatter mode specifed:
    Setting the mode to markers
    Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
  A line object has been specified, but lines is not in the mode
  Adding lines to the mode...
  A line object has been specified, but lines is not in the mode
  Adding lines to the mode...
  No trace type specified:
    Based on info supplied, a 'scatter' trace seems appropriate.
    Read more about this trace type -> https://plotly.com/r/reference/#scatter
  No scatter mode specifed:
    Setting the mode to markers
    Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
  A line object has been specified, but lines is not in the mode
  Adding lines to the mode...
  No trace type specified:
    Based on info supplied, a 'scatter' trace seems appropriate.
    Read more about this trace type -> https://plotly.com/r/reference/#scatter
  No scatter mode specifed:
    Setting the mode to markers
    Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
  A line object has been specified, but lines is not in the mode
  Adding lines to the mode...
  Fetching Open Specy reference libraries from AWS ...
  Fetching medoid derivative library...
  Use 'load_lib()' to load the library
  Launching bundled OpenSpecy Shiny app from: /tmp/RtmpKiZHES/working_dir/RtmptzwiZp/OpenSpecy-testthat-run-app-launch
  object 'x' needs to be a list of 'OpenSpecy' objects; nothing to concatenate, returning 'x'
  [ FAIL 1 | WARN 31 | SKIP 28 | PASS 3746 ]
  
  ══ Skipped tests (28) ══════════════════════════════════════════════════════════
  • On CRAN (7): 'test-app-onboarding.R:252:3', 'test-build_lib.R:2376:3',
    'test-def_features.R:134:3', 'test-def_features.R:155:3',
    'test-manage_lib.R:76:3', 'test-match_spec.R:156:3',
    'test-match_spec.R:310:3'
  • Repository source files are not in the package tarball (1):
    'test-shinylive_wasm.R:285:5'
  • Repository-only hosted deployment files are not in the package tarball (1):
    'test-shinylive_wasm.R:891:5'
  • Repository-only hosted-site sources are not in the package tarball (1):
    'test-shinylive_wasm.R:1182:5'
  • Repository-only wasm deployment tools are not in the package tarball (9):
    'test-shinylive_wasm.R:128:3', 'test-shinylive_wasm.R:228:3',
    'test-shinylive_wasm.R:321:5', 'test-shinylive_wasm.R:332:3',
    'test-shinylive_wasm.R:413:3', 'test-shinylive_wasm.R:469:3',
    'test-shinylive_wasm.R:505:3', 'test-shinylive_wasm.R:542:3',
    'test-shinylive_wasm.R:604:3'
  • Repository-only wasm preflight scripts are not in the package tarball (1):
    'test-shinylive_wasm.R:730:5'
  • Repository-only workflow files are not in the package tarball (2):
    'test-shinylive_wasm.R:635:5', 'test-shinylive_wasm.R:864:5'
  • Repository-only workspace path contract is not in the package tarball (1):
    'test-shinylive_wasm.R:845:5'
  • correct_spike.OpenSpecy is registered when documentation is regenerated (1):
    'test-run_app.R:2002:3'
  • repository-only reference workflow tables are not installed (4):
    'test-build_lib.R:1672:3', 'test-build_lib.R:1858:3',
    'test-build_lib.R:3144:3', 'test-build_lib.R:3181:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-build_lib.R:913:3'): build_lib() runs default joins, processing, SNR, and assessment ──
  Expected `all(vapply(built, check_OpenSpecy, logical(1)))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 31 | SKIP 28 | PASS 3746 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s/23s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/OpenSpecy.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 12:49.04, 341.71 + 18.54