* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/MetaHD.Rcheck’ * using R Under development (unstable) (2026-10-28 r90786) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-29 14:38:33 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘MetaHD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MetaHD’ version ‘0.1.6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: 'gVenn' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MetaHD’ can be installed ... [37s/41s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s/22s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [19s/20s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [82s/88s] [82s/88s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MetaHD) > > test_check("MetaHD") Saving _problems/test-fastmetahd-dc-87.R Saving _problems/test-fastmetahd-dc-92.R MetaHD multivariate meta-analysis Outcomes: 20 outcome estimate std.err pVal I2.stat Var1 0.48970427 0.4291094 0.253782242 22.26138 Var2 -0.05914825 0.3241573 0.855215685 50.57488 Var3 0.03946117 0.4578769 0.931321007 60.94446 Var4 -0.59574745 0.2908189 0.040509361 0.00000 Var5 -0.20381566 0.4657557 0.661674735 73.34153 Var6 0.68059560 0.2427665 0.005055135 0.00000 Var7 -0.19545455 0.2418027 0.418904911 0.00000 Var8 0.03386110 0.5440660 0.950373998 82.95799 Var9 0.28289677 0.2309181 0.220539135 0.00000 Var10 0.15689936 0.4284539 0.714216663 33.96592 ... and 10 more outcome(s); use summary() for the full table. [ FAIL 2 | WARN 0 | SKIP 1 | PASS 107 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • {gVenn} is not installed (1): 'test-plots.R:148:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fastmetahd-dc.R:87:3'): divide-and-conquer returns per-outcome I2.stat aligned with outcomes ── Expected `unname(dc$estimate)` to equal `unname(full$estimate)`. Differences: 20/20 mismatches (average diff: 0.000623) [1] 0.4899 - 0.4897 == 2.17e-04 [2] -0.0589 - -0.0588 == -3.63e-05 [3] 0.0394 - 0.0396 == -2.37e-04 [4] -0.5957 - -0.5971 == 1.39e-03 [5] -0.2038 - -0.2040 == 1.18e-04 [6] 0.6811 - 0.6818 == -6.93e-04 [7] -0.1952 - -0.1959 == 6.28e-04 [8] 0.0339 - 0.0339 == 8.00e-06 [9] 0.2868 - 0.2856 == 1.20e-03 ... ── Failure ('test-fastmetahd-dc.R:92:3'): divide-and-conquer returns per-outcome I2.stat aligned with outcomes ── Expected `unname(dc$I2.stat)` to equal `unname(full$I2.stat[-1])`. Differences: 10/20 mismatches (average diff: 0.0124) [1] 22.2 - 22.3 == -0.015638 [2] 50.6 - 50.6 == -0.000594 [3] 60.9 - 60.9 == 0.006942 [5] 73.3 - 73.3 == 0.001759 [8] 83.0 - 83.0 == 0.000510 [10] 33.9 - 33.9 == -0.016395 [12] 69.3 - 69.3 == 0.004561 [13] 29.7 - 29.8 == -0.062745 [17] 66.9 - 66.9 == -0.007716 ... [ FAIL 2 | WARN 0 | SKIP 1 | PASS 107 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/MetaHD.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:28.57, 230.55 + 16.42