* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/LDAcoop.Rcheck’
* using R Under development (unstable) (2026-10-28 r90786)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-29 14:02:58 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘LDAcoop/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LDAcoop’ version ‘0.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LDAcoop’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(LDAcoop)
  > 
  > test_check("LDAcoop")
   reference class is 0
   reference class is 0
   reference class is 0
  Saving _problems/test-LDA_table-28.R
  Saving _problems/test-LDA_table-29.R
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 32 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-LDA_table.R:28:3'): uncertainty choice ───────────────────────
  Expected `u.ep$act.CI.lb` to be identical to `u.act$act.CI.lb`.
  Differences:
      actual               | expected                
  [1] 1.0041059729609627   | 1.0041059729609627   [1]
  [2] 1.3508483419817447   | 1.3508483419817447   [2]
  [3] 2.4694239848701263   - 2.4694239848701280   [3]
  [4] 9.1831322840282805   - 9.1831322840282787   [4]
  [5] 47.7882377443789181  - 47.7882377443788471  [5]
  [6] 239.8077189247956369 | 239.8077189247956369 [6]
  
  ── Failure ('test-LDA_table.R:29:3'): uncertainty choice ───────────────────────
  Expected `u.ep$SF` to be identical to `u.act$SF`.
  Differences:
      actual              | expected               
  [1] NA                  | NA                  [1]
  [2] 0.73705148429255407 - 0.73705148429255396 [2]
  [3] 0.40422064791055329 - 0.40422064791055357 [3]
  [4] 0.10965707918987766 | 0.10965707918987766 [4]
  [5] 0.02105001742463197 | 0.02105001742463197 [5]
  [6] 0.00411198723483134 | 0.00411198723483134 [6]
  
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 32 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s/12s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-MKL/LDAcoop.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:15.95, 61.14 + 7.65