* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/Cyclops.Rcheck’ * using R Under development (unstable) (2026-05-22 r90067) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) * running under: Fedora Linux 42 (Workstation Edition) * using session charset: UTF-8 * current time: 2026-05-23 09:51:38 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘Cyclops/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Cyclops’ version ‘3.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Cyclops’ can be installed ... [407s/308s] OK * used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [31s/50s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [7m/13m] [7m/13m] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("Cyclops") Loading required package: Cyclops Sparseness = 52.175 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Saving _problems/test-bootstrap-214.R Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 52.175 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 52.175 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sparseness = 98.99 % Sorting covariates by covariateId and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1779531088] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.0101 (default) Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #1 pred log like = -23.4893 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #1 pred log like = -42.2824 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #1 pred log like = -37.0171 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #1 pred log like = -25.1406 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #1 pred log like = -42.2824 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #1 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #1 pred log like = -23.4893 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #2 pred log like = -20.2198 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #2 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #2 pred log like = -20.2198 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #2 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #2 pred log like = -45.853 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #2 pred log like = -45.853 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #2 pred log like = -25.1406 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #2 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #2 pred log like = -31.8582 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #2 pred log like = -28.4767 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #3 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #3 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #3 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #3 pred log like = -26.803 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #3 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #3 pred log like = -31.8582 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #3 pred log like = -45.853 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #3 pred log like = -26.803 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #3 pred log like = -21.8491 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #4 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #4 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #4 pred log like = -25.1406 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #4 pred log like = -35.2858 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #4 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #4 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #4 pred log like = -35.2858 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #4 pred log like = -25.1406 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #4 pred log like = -37.0171 AvgPred = -32.4632 with stdev = 6.88141 Completed at 0.0101 Next point at 0.101 with value 0 and continue = 1 search[ 0.0101 ] = -32.4632(6.88141) Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #1 pred log like = -23.4893 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #1 pred log like = -42.2824 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #1 pred log like = -37.0171 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #1 pred log like = -25.1406 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #1 pred log like = -42.2824 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #1 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #1 pred log like = -23.4893 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #2 pred log like = -20.2198 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #2 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #2 pred log like = -20.2198 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #2 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #2 pred log like = -45.853 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #2 pred log like = -45.853 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #2 pred log like = -25.1406 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #2 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #2 pred log like = -31.8582 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #2 pred log like = -28.4767 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #3 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #3 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #3 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #3 pred log like = -26.803 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #3 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #3 pred log like = -31.8582 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #3 pred log like = -45.853 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #3 pred log like = -26.803 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #3 pred log like = -21.8491 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #4 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #4 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #4 pred log like = -25.1488 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #4 pred log like = -35.2858 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #4 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #4 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #4 pred log like = -35.2858 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #4 pred log like = -25.1406 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #4 pred log like = -37.0171 AvgPred = -32.4634 with stdev = 6.88119 Completed at 0.101 Next point at 0.00101 with value 0 and continue = 1 search[ 0.0101 ] = -32.4632(6.88141) search[ 0.101 ] = -32.4634(6.88119) Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #1 pred log like = -23.4893 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #1 pred log like = -42.2824 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #1 pred log like = -37.0171 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #1 pred log like = -25.1406 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #1 pred log like = -42.2824 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #1 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #1 pred log like = -23.4893 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #2 pred log like = -20.2198 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #2 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #2 pred log like = -20.2198 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #2 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #2 pred log like = -45.853 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #2 pred log like = -45.853 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #2 pred log like = -25.1406 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #2 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #2 pred log like = -31.8582 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #2 pred log like = -28.4767 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #3 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #3 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #3 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #3 pred log like = -26.803 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #3 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #3 pred log like = -31.8582 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #3 pred log like = -45.853 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #3 pred log like = -26.803 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #3 pred log like = -21.8491 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #4 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #4 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #4 pred log like = -25.1406 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #4 pred log like = -35.2858 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #4 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #4 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #4 pred log like = -35.2858 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #4 pred log like = -25.1406 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #4 pred log like = -37.0171 AvgPred = -32.4632 with stdev = 6.88141 Completed at 0.00101 Next point at 0.0031939 with value -32.4631 and continue = 0 search[ 0.00101 ] = -32.4632(6.88141) search[ 0.0101 ] = -32.4632(6.88141) search[ 0.101 ] = -32.4634(6.88119) Maximum predicted log likelihood (-32.4631) estimated at: 0.0031939 (variance) 25.0239 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(25.0239) None Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 75.605 % Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 76.15 % Sorting covariates by covariateId and rowId Sparseness = 75.695 % Sorting covariates by covariateId and rowId Sparseness = 75.9 % Sorting covariates by covariateId and rowId Sparseness = 75.3 % Sorting covariates by covariateId and rowId Sparseness = 13.23 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 76.4 % Sorting covariates by covariateId and rowId Analysis took 0.0705 secs ( 0.00481 ) Fitting model using clogit Analysis took 0.642 secs Sparseness = 76.4 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Analysis took 0.0448 secs ( 0.000454 ) Fitting model using coxpht Analysis took 0.0482 secs Using prior: None log post: -153.562 (-153.562 + 0) (iter:1, conv: 1.49516) log post: -140.336 (-140.336 + 0) (iter:2, conv: 0.417984) log post: -132.01 (-132.01 + 0) (iter:3, conv: 0.261069) log post: -126.375 (-126.375 + 0) (iter:4, conv: 0.183922) log post: -122.375 (-122.375 + 0) (iter:5, conv: 0.136891) log post: -119.439 (-119.439 + 0) (iter:6, conv: 0.106878) log post: -117.228 (-117.228 + 0) (iter:7, conv: 0.0862994) log post: -115.53 (-115.53 + 0) (iter:8, conv: 0.071395) log post: -114.206 (-114.206 + 0) (iter:9, conv: 0.060154) log post: -113.159 (-113.159 + 0) (iter:10, conv: 0.051408) log post: -112.323 (-112.323 + 0) (iter:11, conv: 0.0444337) log post: -111.649 (-111.649 + 0) (iter:12, conv: 0.0387604) log post: -111.102 (-111.102 + 0) (iter:13, conv: 0.0340695) log post: -110.655 (-110.655 + 0) (iter:14, conv: 0.0301375) log post: -110.288 (-110.288 + 0) (iter:15, conv: 0.0268034) log post: -109.985 (-109.985 + 0) (iter:16, conv: 0.0239483) log post: -109.733 (-109.733 + 0) (iter:17, conv: 0.0214827) log post: -109.524 (-109.524 + 0) (iter:18, conv: 0.0193378) log post: -109.349 (-109.349 + 0) (iter:19, conv: 0.0174597) log post: -109.202 (-109.202 + 0) (iter:20, conv: 0.0158061) log post: -109.079 (-109.079 + 0) (iter:21, conv: 0.0143429) log post: -108.976 (-108.976 + 0) (iter:22, conv: 0.0130423) log post: -108.889 (-108.889 + 0) (iter:23, conv: 0.0118819) log post: -108.815 (-108.815 + 0) (iter:24, conv: 0.0108428) log post: -108.752 (-108.752 + 0) (iter:25, conv: 0.00990905) log post: -108.7 (-108.7 + 0) (iter:26, conv: 0.00906454) log post: -108.655 (-108.655 + 0) (iter:27, conv: 0.00830244) log post: -108.616 (-108.616 + 0) (iter:28, conv: 0.00761308) log post: -108.584 (-108.584 + 0) (iter:29, conv: 0.00698817) log post: -108.556 (-108.556 + 0) (iter:30, conv: 0.00642058) log post: -108.533 (-108.533 + 0) (iter:31, conv: 0.00590412) log post: -108.512 (-108.512 + 0) (iter:32, conv: 0.00543344) log post: -108.495 (-108.495 + 0) (iter:33, conv: 0.00500383) log post: -108.48 (-108.48 + 0) (iter:34, conv: 0.00461118) log post: -108.468 (-108.468 + 0) (iter:35, conv: 0.00425187) log post: -108.457 (-108.457 + 0) (iter:36, conv: 0.00392269) log post: -108.448 (-108.448 + 0) (iter:37, conv: 0.00362081) log post: -108.44 (-108.44 + 0) (iter:38, conv: 0.00334369) log post: -108.433 (-108.433 + 0) (iter:39, conv: 0.00308909) log post: -108.427 (-108.427 + 0) (iter:40, conv: 0.00285498) log post: -108.422 (-108.422 + 0) (iter:41, conv: 0.00263955) log post: -108.418 (-108.418 + 0) (iter:42, conv: 0.00244118) log post: -108.415 (-108.415 + 0) (iter:43, conv: 0.0022584) log post: -108.411 (-108.411 + 0) (iter:44, conv: 0.00208989) log post: -108.409 (-108.409 + 0) (iter:45, conv: 0.00193445) log post: -108.406 (-108.406 + 0) (iter:46, conv: 0.001791) log post: -108.404 (-108.404 + 0) (iter:47, conv: 0.00165855) log post: -108.403 (-108.403 + 0) (iter:48, conv: 0.00153621) log post: -108.401 (-108.401 + 0) (iter:49, conv: 0.00142316) log post: -108.4 (-108.4 + 0) (iter:50, conv: 0.00131866) log post: -108.399 (-108.399 + 0) (iter:51, conv: 0.00122202) log post: -108.398 (-108.398 + 0) (iter:52, conv: 0.00113264) log post: -108.397 (-108.397 + 0) (iter:53, conv: 0.00104994) log post: -108.396 (-108.396 + 0) (iter:54, conv: 0.000973398) log post: -108.396 (-108.396 + 0) (iter:55, conv: 0.000902544) log post: -108.395 (-108.395 + 0) (iter:56, conv: 0.000836938) log post: -108.395 (-108.395 + 0) (iter:57, conv: 0.00077618) log post: -108.394 (-108.394 + 0) (iter:58, conv: 0.0007199) log post: -108.394 (-108.394 + 0) (iter:59, conv: 0.000667758) log post: -108.394 (-108.394 + 0) (iter:60, conv: 0.000619443) log post: -108.393 (-108.393 + 0) (iter:61, conv: 0.000574666) log post: -108.393 (-108.393 + 0) (iter:62, conv: 0.000533163) log post: -108.393 (-108.393 + 0) (iter:63, conv: 0.000494688) log post: -108.393 (-108.393 + 0) (iter:64, conv: 0.000459018) log post: -108.393 (-108.393 + 0) (iter:65, conv: 0.000425942) log post: -108.393 (-108.393 + 0) (iter:66, conv: 0.000395271) log post: -108.393 (-108.393 + 0) (iter:67, conv: 0.000366825) log post: -108.393 (-108.393 + 0) (iter:68, conv: 0.000340441) log post: -108.392 (-108.392 + 0) (iter:69, conv: 0.000315968) log post: -108.392 (-108.392 + 0) (iter:70, conv: 0.000293265) log post: -108.392 (-108.392 + 0) (iter:71, conv: 0.000272203) log post: -108.392 (-108.392 + 0) (iter:72, conv: 0.000252661) log post: -108.392 (-108.392 + 0) (iter:73, conv: 0.00023453) log post: -108.392 (-108.392 + 0) (iter:74, conv: 0.000217706) log post: -108.392 (-108.392 + 0) (iter:75, conv: 0.000202094) log post: -108.392 (-108.392 + 0) (iter:76, conv: 0.000187606) log post: -108.392 (-108.392 + 0) (iter:77, conv: 0.00017416) log post: -108.392 (-108.392 + 0) (iter:78, conv: 0.000161682) log post: -108.392 (-108.392 + 0) (iter:79, conv: 0.000150101) log post: -108.392 (-108.392 + 0) (iter:80, conv: 0.000139351) log post: -108.392 (-108.392 + 0) (iter:81, conv: 0.000129374) log post: -108.392 (-108.392 + 0) (iter:82, conv: 0.000120112) log post: -108.392 (-108.392 + 0) (iter:83, conv: 0.000111516) log post: -108.392 (-108.392 + 0) (iter:84, conv: 0.000103536) log post: -108.392 (-108.392 + 0) (iter:85, conv: 9.6128e-05) log post: -108.392 (-108.392 + 0) (iter:86, conv: 8.92512e-05) log post: -108.392 (-108.392 + 0) (iter:87, conv: 8.28673e-05) log post: -108.392 (-108.392 + 0) (iter:88, conv: 7.69408e-05) log post: -108.392 (-108.392 + 0) (iter:89, conv: 7.14387e-05) log post: -108.392 (-108.392 + 0) (iter:90, conv: 6.63307e-05) log post: -108.392 (-108.392 + 0) (iter:91, conv: 6.15884e-05) log post: -108.392 (-108.392 + 0) (iter:92, conv: 5.71856e-05) log post: -108.392 (-108.392 + 0) (iter:93, conv: 5.30979e-05) log post: -108.392 (-108.392 + 0) (iter:94, conv: 4.93026e-05) log post: -108.392 (-108.392 + 0) (iter:95, conv: 4.5779e-05) log post: -108.392 (-108.392 + 0) (iter:96, conv: 4.25074e-05) log post: -108.392 (-108.392 + 0) (iter:97, conv: 3.94698e-05) log post: -108.392 (-108.392 + 0) (iter:98, conv: 3.66494e-05) log post: -108.392 (-108.392 + 0) (iter:99, conv: 3.40307e-05) log post: -108.392 (-108.392 + 0) (iter:100, conv: 3.15993e-05) log post: -108.392 (-108.392 + 0) (iter:101, conv: 2.93417e-05) log post: -108.392 (-108.392 + 0) (iter:102, conv: 2.72454e-05) log post: -108.392 (-108.392 + 0) (iter:103, conv: 2.5299e-05) log post: -108.392 (-108.392 + 0) (iter:104, conv: 2.34918e-05) log post: -108.392 (-108.392 + 0) (iter:105, conv: 2.18137e-05) log post: -108.392 (-108.392 + 0) (iter:106, conv: 2.02555e-05) log post: -108.392 (-108.392 + 0) (iter:107, conv: 1.88087e-05) log post: -108.392 (-108.392 + 0) (iter:108, conv: 1.74652e-05) log post: -108.392 (-108.392 + 0) (iter:109, conv: 1.62178e-05) log post: -108.392 (-108.392 + 0) (iter:110, conv: 1.50595e-05) log post: -108.392 (-108.392 + 0) (iter:111, conv: 1.39839e-05) log post: -108.392 (-108.392 + 0) (iter:112, conv: 1.29852e-05) log post: -108.392 (-108.392 + 0) (iter:113, conv: 1.20578e-05) log post: -108.392 (-108.392 + 0) (iter:114, conv: 1.11967e-05) log post: -108.392 (-108.392 + 0) (iter:115, conv: 1.0397e-05) log post: -108.392 (-108.392 + 0) (iter:116, conv: 9.65454e-06) log post: -108.392 (-108.392 + 0) (iter:117, conv: 8.96507e-06) log post: -108.392 (-108.392 + 0) (iter:118, conv: 8.32486e-06) log post: -108.392 (-108.392 + 0) (iter:119, conv: 7.73036e-06) log post: -108.392 (-108.392 + 0) (iter:120, conv: 7.17833e-06) log post: -108.392 (-108.392 + 0) (iter:121, conv: 6.66573e-06) log post: -108.392 (-108.392 + 0) (iter:122, conv: 6.18973e-06) log post: -108.392 (-108.392 + 0) (iter:123, conv: 5.74773e-06) log post: -108.392 (-108.392 + 0) (iter:124, conv: 5.3373e-06) log post: -108.392 (-108.392 + 0) (iter:125, conv: 4.95617e-06) log post: -108.392 (-108.392 + 0) (iter:126, conv: 4.60227e-06) log post: -108.392 (-108.392 + 0) (iter:127, conv: 4.27364e-06) log post: -108.392 (-108.392 + 0) (iter:128, conv: 3.96847e-06) log post: -108.392 (-108.392 + 0) (iter:129, conv: 3.6851e-06) log post: -108.392 (-108.392 + 0) (iter:130, conv: 3.42197e-06) log post: -108.392 (-108.392 + 0) (iter:131, conv: 3.17762e-06) log post: -108.392 (-108.392 + 0) (iter:132, conv: 2.95073e-06) log post: -108.392 (-108.392 + 0) (iter:133, conv: 2.74003e-06) log post: -108.392 (-108.392 + 0) (iter:134, conv: 2.54439e-06) log post: -108.392 (-108.392 + 0) (iter:135, conv: 2.36271e-06) log post: -108.392 (-108.392 + 0) (iter:136, conv: 2.194e-06) log post: -108.392 (-108.392 + 0) (iter:137, conv: 2.03734e-06) log post: -108.392 (-108.392 + 0) (iter:138, conv: 1.89187e-06) log post: -108.392 (-108.392 + 0) (iter:139, conv: 1.75679e-06) log post: -108.392 (-108.392 + 0) (iter:140, conv: 1.63135e-06) log post: -108.392 (-108.392 + 0) (iter:141, conv: 1.51487e-06) log post: -108.392 (-108.392 + 0) (iter:142, conv: 1.4067e-06) log post: -108.392 (-108.392 + 0) (iter:143, conv: 1.30626e-06) log post: -108.392 (-108.392 + 0) (iter:144, conv: 1.21299e-06) log post: -108.392 (-108.392 + 0) (iter:145, conv: 1.12638e-06) log post: -108.392 (-108.392 + 0) (iter:146, conv: 1.04596e-06) log post: -108.392 (-108.392 + 0) (iter:147, conv: 9.71275e-07) Reached convergence criterion Using prior: Laplace(1.41421) None KKT Swindle count 1, activeSet size = 1 update time: 2.785e-05 in 1 iterations. Inactive set violations: 1 KKT Swindle count 2, activeSet size = 2 update time: 0.00338747 in 134 iterations. Sparseness = 99.012 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Generating censoring weights Generating censoring weights Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1779531139] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 20.3427 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 79.8291 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 44.5701 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 112.869 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 14.674 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.625 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 24.9457 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 59.4911 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6944 with stdev = 36.9967 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9967) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 79.7695 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 44.6337 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 110.219 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 106.149 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 14.5878 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.8915 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 24.792 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 57.3442 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0731 with stdev = 36.4706 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0731(36.4706) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 20.3273 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 118.443 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 107.806 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 15.7525 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0061 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 25.0614 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4807 with stdev = 38.0685 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0731(36.4706) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 79.0526 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 16.8111 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9945 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 25.4635 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4216 with stdev = 37.6865 Completed at 0.00333333 Next point at 0.00390013 with value 50.4732 and continue = 0 search[ 0.00333333 ] = 50.4216(37.6865) search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0731(36.4706) Maximum predicted log likelihood (50.4732) estimated at: 0.00390013 (variance) 22.6452 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.6452) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Performing 10-fold cross-validation [seed = 1779531139] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 20.3428 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 79.8291 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 44.5885 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 112.88 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 14.6736 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.6273 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 24.9429 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 59.4621 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6944 with stdev = 36.9977 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9977) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 79.7723 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 44.6626 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 110.229 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 106.149 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 14.5912 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.9162 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 24.7804 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 57.3848 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0829 with stdev = 36.4723 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9977) search[ 3.33333 ] = 49.0829(36.4723) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 20.3271 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 79.634 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 118.449 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 107.811 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 15.7527 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0058 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 25.063 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.482 with stdev = 38.0702 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.482(38.0702) search[ 0.333333 ] = 49.6944(36.9977) search[ 3.33333 ] = 49.0829(36.4723) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 79.0549 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 16.8122 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9947 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 25.464 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.422 with stdev = 37.6866 Completed at 0.00333333 Next point at 0.00379927 with value 50.474 and continue = 0 search[ 0.00333333 ] = 50.422(37.6866) search[ 0.0333333 ] = 50.482(38.0702) search[ 0.333333 ] = 49.6944(36.9977) search[ 3.33333 ] = 49.0829(36.4723) Maximum predicted log likelihood (50.474) estimated at: 0.00379927 (variance) 22.9438 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.9438) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Sparseness = 80.112 % Sorting covariates by covariateId, stratumId, and rowId Using cross-validation selector type byPid Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #10 Rep #1 pred log like = -13052.5 AvgPred = -13470.4 with stdev = 621.67 Completed at 0.1 Next point at 1 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #10 Rep #1 pred log like = -13052.4 AvgPred = -13470.4 with stdev = 621.671 Completed at 1 Next point at 0.01 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #5 Rep #1 pred log like = -13190.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #6 Rep #1 pred log like = -14031.9 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #10 Rep #1 pred log like = -13052.6 AvgPred = -13470.3 with stdev = 621.666 Completed at 0.01 Next point at 0.001 with value 0 and continue = 1 search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #2 Rep #1 pred log like = -13824.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #5 Rep #1 pred log like = -13189.8 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #6 Rep #1 pred log like = -14031.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #8 Rep #1 pred log like = -13911.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #10 Rep #1 pred log like = -13052.9 AvgPred = -13470.3 with stdev = 621.685 Completed at 0.001 Next point at 0.0001 with value 0 and continue = 1 search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #2 Rep #1 pred log like = -13824.4 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #3 Rep #1 pred log like = -13922.3 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #5 Rep #1 pred log like = -13189 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #6 Rep #1 pred log like = -14030.9 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #7 Rep #1 pred log like = -13053.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #8 Rep #1 pred log like = -13911.5 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #10 Rep #1 pred log like = -13053.1 AvgPred = -13470.2 with stdev = 621.656 Completed at 0.0001 Next point at 1e-05 with value 0 and continue = 1 search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #2 Rep #1 pred log like = -13825.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #3 Rep #1 pred log like = -13922.8 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #4 Rep #1 pred log like = -12011.1 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #5 Rep #1 pred log like = -13189.7 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #6 Rep #1 pred log like = -14031.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #7 Rep #1 pred log like = -13054.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #8 Rep #1 pred log like = -13912.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #9 Rep #1 pred log like = -13562 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #10 Rep #1 pred log like = -13054.1 AvgPred = -13471.1 with stdev = 621.373 Completed at 1e-05 Next point at 0.0125877 with value -13470.2 and continue = 0 search[ 1e-05 ] = -13471.1(621.373) search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Maximum predicted log likelihood (-13470.2) estimated at: 0.0125877 (variance) 12.605 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(12.605) None Sparseness = 80.112 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 99.09 % Sorting covariates by covariateId and rowId [ FAIL 1 | WARN 0 | SKIP 26 | PASS 346 ] ══ Skipped tests (26) ══════════════════════════════════════════════════════════ • Current not working (1): 'test-offsetPoisson.R:41:5' • GPU not available (6): 'test-gpucox.R:12:5', 'test-gpucox.R:37:5', 'test-gpucox.R:63:5', 'test-gpucox.R:88:5', 'test-gpucox.R:118:5', 'test-timevaryingCox.R:8:5' • Needs debugging (1): 'test-profileLikelihood.R:126:2' • On CRAN (11): 'test-cv.R:37:5', 'test-cv.R:110:5', 'test-cv.R:148:5', 'test-dataConversionStratified.R:113:3', 'test-largeBernoulli.R:26:5', 'test-largeBernoulli.R:73:5', 'test-outOfSample.R:7:5', 'test-parameterizedPriors.R:88:5', 'test-smallExactCLR.R:9:5', 'test-smallExactCLR.R:32:5', 'test-weighted_cv.R:5:5' • empty test (6): 'test-believedBroken.R:75:1', 'test-cprViaSql.R:5:1', 'test-multitypePoisson.R:113:1', 'test-multitypePoisson.R:146:1', 'test-sqlConstructor.R:101:1', 'test-weighting.R:259:1' • for debugging purposes; simulation takes too long (1): 'test-floatingPoint.R:57:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-bootstrap.R:212:5'): Large logistic bootstrap with and without weights ── Expected `bsNoWeights$summary[, c("bpi_lower", "bpi_upper")]` to be equivalent to `getAllPercentileIntervals(bbNoWeights)`. Component "bpi_upper": Mean relative difference: 0.07614425 [ FAIL 1 | WARN 0 | SKIP 26 | PASS 346 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [9s/15s] OK * checking HTML version of manual ... [6s/11s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-MKL/Cyclops.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 21:18.23, 911.80 + 40.19