* using log directory ‘/data/gannet/ripley/R/packages/tests-MKL/CSCNet.Rcheck’
* using R Under development (unstable) (2025-12-23 r89222)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘CSCNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CSCNet’ version ‘0.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CSCNet’ can be installed ... [32s/44s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [10s/14s] OK
* checking whether the package can be loaded with stated dependencies ... [8s/11s] OK
* checking whether the package can be unloaded cleanly ... [8s/12s] OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... [9s/10s] OK
* checking loading without being on the library search path ... [9s/14s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/56s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [171s/233s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘CSCNet.Rmd’ using rmarkdown

Quitting from CSCNet.Rmd:108-169 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: 1825.
Caused by error in `purrr::pmap()`:
ℹ In index: 1.
ℹ With name: 1.
Caused by error in `if (alpha > 1) ...`:
! argument is of length zero
---
Backtrace:
     ▆
  1. ├─CSCNet::tune_penCSC(...)
  2. │ └─final_params %>% ...
  3. ├─purrr::map(...)
  4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  5. │   ├─purrr:::with_indexed_errors(...)
  6. │   │ └─base::withCallingHandlers(...)
  7. │   ├─purrr:::call_with_cleanup(...)
  8. │   └─CSCNet (local) .f(.x[[i]], ...)
  9. │     └─CSCNet::penCSC(...)
 10. │       └─purrr::pmap(...)
 11. │         └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)
 12. │           ├─purrr:::with_indexed_errors(...)
 13. │           │ └─base::withCallingHandlers(...)
 14. │           ├─purrr:::call_with_cleanup(...)
 15. │           └─CSCNet (local) .f(...)
 16. │             ├─... %>% unique()
 17. │             └─glmnet::glmnet(...)
 18. ├─base::unique(.)
 19. ├─base::sort(., decreasing = T)
 20. └─CSCNet (local) `<fn>`(.)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CSCNet.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: 1825.
Caused by error in `purrr::pmap()`:
ℹ In index: 1.
ℹ With name: 1.
Caused by error in `if (alpha > 1) ...`:
! argument is of length zero
--- failed re-building ‘CSCNet.Rmd’

SUMMARY: processing the following file failed:
  ‘CSCNet.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [7s/20s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-MKL/CSCNet.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 9:57.08, 391.71 + 27.72