* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/BRETIGEA.Rcheck’ * using R Under development (unstable) (2026-10-30 r90804) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-30 16:48:35 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘BRETIGEA/DESCRIPTION’ ... OK * this is package ‘BRETIGEA’ version ‘1.0.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BRETIGEA’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Base packages in Suggests/Enhances imported in NAMESPACE: ‘stats’ ‘utils’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [11s/11s] [11s/12s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(BRETIGEA) > test_check("BRETIGEA") markers cell 1 AQP4 ast 2 ALDH1L1 ast 3 BMPR1B ast 4 SLC14A1 ast 5 MLC1 ast 6 FGFR3 ast 7 SLC25A18 ast 8 GLI3 ast 9 GFAP ast 10 ACSBG1 ast 11 SLC4A4 ast 12 GJA1 ast 13 GJB6 ast 14 SLC39A12 ast 15 AGT ast 16 CHRDL1 ast 17 SLC1A2 ast 18 CLDN10 ast 19 SOX9 ast 20 PPP1R3C ast [1] "AQP4" "ALDH1L1" "BMPR1B" "SLC14A1" "MLC1" "FGFR3" [7] "SLC25A18" "GLI3" "GFAP" "ACSBG1" "SLC4A4" "GJA1" [13] "GJB6" "SLC39A12" "AGT" "CHRDL1" "SLC1A2" "CLDN10" [19] "SOX9" "PPP1R3C" "CLU" "SLC7A10" "ID4" "DIO2" [25] "SFXN5" "SLC6A11" "ATP13A4" "ACOT11" "SCARA3" "ALDOC" [31] "PLCD4" "ATP1B2" "NTSR2" "RGS20" "ELOVL2" "PAX6" [37] "ENTPD2" "NCAN" "KIAA1161" "ETNPPL" "PPAP2B" "LGR6" [43] "GPAM" "NWD1" "F3" "TTPA" "CBS" "LIX1" [49] "GRIN2C" "PHKG1" [1] "APOLD1" "EMCN" "SDPR" "PTPRB" "CDH5" "SLC38A5" "TM4SF1" [8] "NOSTRIN" "CYYR1" "MECOM" "MYCT1" "CLDN5" "ERG" "ABCB1" [15] "ICAM2" "FN1" "ESAM" "ATP10A" "VWF" "CD34" "PODXL" [22] "SLC19A3" "FLT1" "TBX3" "HMCN1" "ITM2A" "TEK" "ITGA1" [29] "TIE1" "ADCY4" "CLIC5" "ANXA1" "OCLN" "PALMD" "SEMA3G" [36] "ABCG2" "ROBO4" "SLC16A4" "SLC52A3" "SOX7" "SHE" "CA4" [43] "EBF1" "CD93" "KDR" "SLC2A1" "PTRF" "LEF1" "HIGD1B" [50] "FOXF2" [1] "CCL3" "CCL4" "CD14" "C1QB" "IL1A" "TREM2" "GPR183" [8] "CD83" "SLC2A5" "C1QC" "NCKAP1L" "CSF1R" "CD300A" "FCGR2A" [15] "LAPTM5" "HAVCR2" "C3AR1" "CX3CR1" "PTAFR" "C1QA" "FCGR1A" [22] "SELPLG" "PLEK" "CTSS" "CSF3R" "TYROBP" "SLA" "PTPN6" [29] "TLR2" "CD86" "GPR84" "LYZ" "MPEG1" "BCL2A1" "ITGAM" [36] "CD53" "IRF8" "IL10RA" "GPR34" "AIF1" "CD74" "PTPRC" [43] "RHOH" "BLNK" "TLR1" "C5AR1" "FCER1G" "DOCK2" "RGS1" [50] "ALOX5AP" [1] "RELN" "VIP" "GAD2" "TAC3" "DLX1" "PENK" [7] "SYT1" "TMEM130" "GAD1" "SYNPR" "STMN2" "GABRG2" [13] "GPR83" "SST" "ZMAT4" "SNAP25" "RAB3C" "NELL1" [19] "SCG2" "SYT4" "CNR1" "CLSTN2" "SPHKAP" "KCNQ5" [25] "PNOC" "ROBO2" "KCNC2" "GALNTL6" "VSNL1" "GRIN2A" [31] "GABRA1" "CHGB" "SRRM4" "ZNF804A" "KIAA1324" "BCL11A" [37] "SV2B" "HTR3A" "NPY" "PRMT8" "CNTNAP2" "GLRA2" [43] "SLC12A5" "SLC17A6" "CRH" "GRIA1" "GDA" "INA" [49] "RGS8" "CELF4" [1] "PLP1" "CLDN11" "ERMN" "UGT8" "MOG" "MOBP" [7] "MAG" "MBP" "OPALIN" "GJB1" "MYRF" "KLK6" [13] "FA2H" "CNP" "ENPP6" "LPAR1" "ERBB3" "TMEM125" [19] "ANLN" "ASPA" "QDPR" "S1PR5" "ENPP2" "NIPAL4" [25] "MAL" "BCAS1" "CRYAB" "LGI3" "SGK2" "GPR37" [31] "HHIP" "SLAIN1" "TMEM88B" "CNTN2" "NINJ2" "ST18" [37] "MAP6D1" "PLEKHH1" "PRR18" "TF" "TRIM59" "PEX5L" [43] "HAPLN2" "GJC2" "GJC3" "SEPT4" "PPP1R14A" "GPR62" [49] "SEC14L5" "GAL3ST1" [1] "PDGFRA" "SHC4" "MATN4" "TNR" "PNLIP" "PCDH15" [7] "FAM180A" "NEU4" "LHFPL3" "CHST6" "MEGF11" "OLIG1" [13] "GPR17" "RNF43" "RBPJL" "UGT8" "PMEL" "SOX10" [19] "GAL3ST1" "SULF2" "CCNB1" "MYT1" "ACAN" "XYLT1" [25] "CSPG4" "C1QL1" "CKAP2" "GJC3" "TOP2A" "PRKG2" [31] "BCAS1" "SAPCD2" "ZNF488" "LRRN1" "TMEM255B" "S100A3" [37] "PBK" "SUSD5" "STK32A" "SULF1" "PRKCQ" "DPYD" [43] "GPSM2" "LAD1" "UGDH" "CKAP2L" "GJB1" "EMID1" [49] "TGFA" "ADAM12" AQP4 ALDH1L1 BMPR1B SLC14A1 MLC1 FGFR3 SLC25A18 [1,] 0.7958953 0.07419527 0.4061147 0.6875915 0.7476287 0.2868527 0.302239 GLI3 GFAP ACSBG1 SLC4A4 GJA1 GJB6 SLC39A12 [1,] 0.4204516 0.9999001 0.2077684 -0.09074864 0.5208035 -0.5028409 0.1784168 AGT CHRDL1 SLC1A2 CLDN10 SOX9 PPP1R3C CLU [1,] 0.7350907 -0.6087144 -0.3359356 -0.3455259 0.5681326 0.1791119 0.5938866 SLC7A10 ID4 DIO2 SFXN5 SLC6A11 ATP13A4 ACOT11 [1,] -0.110352 0.6952727 -0.2188643 -0.1894126 -0.5592311 0.3663146 0.1992575 SCARA3 ALDOC PLCD4 ATP1B2 NTSR2 RGS20 ELOVL2 [1,] 0.2338075 -0.1107247 -0.5112359 0.1778165 0.4740656 0.1526715 0.1147339 PAX6 ENTPD2 NCAN KIAA1161 ETNPPL PPAP2B LGR6 [1,] 0.5797094 0.7823284 0.05518203 -0.1721708 0.3264465 0.5024131 0.0444335 GPAM NWD1 F3 TTPA CBS LIX1 GRIN2C [1,] -0.159156 0.430843 0.1665845 0.3924951 0.2509145 0.8404202 0.2054718 PHKG1 [1,] 0.7618352 APOLD1 EMCN SDPR PTPRB CDH5 SLC38A5 TM4SF1 [1,] 0.6397974 0.5150059 0.5503207 0.4286219 0.7509274 0.2792929 0.5732277 NOSTRIN CYYR1 MECOM MYCT1 CLDN5 ERG ABCB1 [1,] 0.5492278 0.5233367 0.6553751 0.4798552 0.6769395 0.5483382 0.5187547 ICAM2 FN1 ESAM ATP10A VWF CD34 PODXL [1,] 0.6892712 0.6866703 0.5985029 0.386112 0.6532856 0.4892499 0.6865958 SLC19A3 FLT1 TBX3 HMCN1 ITM2A TEK ITGA1 [1,] 0.3100597 0.682325 0.4185505 0.4729641 0.404837 0.4247323 0.6994108 TIE1 ADCY4 CLIC5 ANXA1 OCLN PALMD SEMA3G [1,] 0.4460777 0.5100022 0.2212121 0.4021003 0.1725926 0.4391917 0.5039709 ABCG2 ROBO4 SLC16A4 SLC52A3 SOX7 SHE CA4 [1,] 0.4910518 0.4063845 0.2065062 0.4868766 0.3217972 0.6208689 -0.1057804 EBF1 CD93 KDR SLC2A1 PTRF LEF1 HIGD1B [1,] 0.4929378 0.4586119 0.4572021 0.6991769 0.4608555 0.1165776 0.1667598 FOXF2 [1,] 0.1962837 CCL3 CCL4 CD14 C1QB IL1A TREM2 [1,] 0.009014479 -0.02049567 -0.6772439 -0.9027497 -0.147061 -0.8121957 GPR183 CD83 SLC2A5 C1QC NCKAP1L CSF1R CD300A [1,] -0.6689415 0.3230165 -0.882668 -0.9215579 -0.924154 -0.7685014 -0.8795061 FCGR2A LAPTM5 HAVCR2 C3AR1 CX3CR1 PTAFR [1,] -0.8366178 -0.9474317 -0.8554602 -0.8224433 -0.3634809 -0.7619302 C1QA FCGR1A SELPLG PLEK CTSS CSF3R [1,] -0.8550013 -0.6713506 -0.5294624 -0.6737376 -0.8570066 -0.7479062 TYROBP SLA PTPN6 TLR2 CD86 GPR84 [1,] -0.9002925 -0.8394877 -0.8757021 -0.8563525 -0.8670868 -0.3866831 LYZ MPEG1 BCL2A1 ITGAM CD53 IRF8 [1,] -0.5769851 -0.3112844 -0.5858728 -0.8377073 -0.8110169 -0.7524594 IL10RA GPR34 AIF1 CD74 PTPRC RHOH [1,] -0.8152008 -0.6202537 -0.8964808 -0.9569894 -0.9488961 -0.3987691 BLNK TLR1 C5AR1 FCER1G DOCK2 RGS1 [1,] -0.6580784 -0.8748194 -0.5982698 -0.8581698 -0.8865086 -0.6465002 ALOX5AP [1,] -0.8643056 RELN VIP GAD2 TAC3 DLX1 PENK [1,] 0.1166803 -0.6135118 -0.8276635 -0.7295642 -0.7836934 -0.4386146 SYT1 TMEM130 GAD1 SYNPR STMN2 GABRG2 [1,] -0.9587805 -0.6442915 -0.8571033 -0.5407849 -0.954468 -0.9428849 GPR83 SST ZMAT4 SNAP25 RAB3C NELL1 [1,] -0.4040754 -0.1924748 -0.8855612 -0.9937954 -0.7968844 -0.8839205 SCG2 SYT4 CNR1 CLSTN2 SPHKAP KCNQ5 PNOC [1,] -0.579349 -0.9400202 -0.4062468 -0.3223093 0.1236097 -0.9203101 -0.4488496 ROBO2 KCNC2 GALNTL6 VSNL1 GRIN2A GABRA1 [1,] -0.8036322 -0.8932601 -0.7152115 -0.8592326 -0.8891878 -0.9103732 CHGB SRRM4 ZNF804A KIAA1324 BCL11A SV2B HTR3A [1,] -0.141477 -0.8110747 -0.3509051 -0.6024863 -0.742308 -0.9386318 -0.1299354 NPY PRMT8 CNTNAP2 GLRA2 SLC12A5 SLC17A6 CRH [1,] 0.2984589 -0.80817 -0.9295066 -0.6637972 -0.9034275 -0.7684521 -0.4350317 GRIA1 GDA INA RGS8 CELF4 [1,] -0.05161995 -0.7713854 -0.8972024 -0.1695003 -0.8067627 PLP1 CLDN11 ERMN UGT8 MOG MOBP MAG [1,] 0.9305459 0.8798909 0.9359872 0.8949407 0.9124765 0.9624925 0.9200603 MBP OPALIN GJB1 MYRF KLK6 FA2H CNP [1,] 0.9924521 0.7476423 0.8302352 0.9282941 0.9099573 0.9222307 0.9139697 ENPP6 LPAR1 ERBB3 TMEM125 ANLN ASPA QDPR [1,] 0.8174142 0.9629297 0.920759 0.8009576 0.884949 0.9246854 0.8106579 S1PR5 ENPP2 NIPAL4 MAL BCAS1 CRYAB LGI3 [1,] 0.9338734 0.931507 0.8928996 0.9135844 0.9744962 0.7663222 0.5304539 SGK2 GPR37 HHIP SLAIN1 TMEM88B CNTN2 NINJ2 [1,] 0.8293518 0.8947933 0.8194185 0.8955728 0.6271867 0.932188 0.8435802 ST18 MAP6D1 PLEKHH1 PRR18 TF TRIM59 PEX5L [1,] 0.9443919 0.8858248 0.9312008 0.8960713 0.9043357 0.875323 0.7511829 HAPLN2 GJC2 GJC3 SEPT4 PPP1R14A GPR62 SEC14L5 [1,] 0.8260379 0.8721555 -0.1293849 0.9596247 0.8221449 0.8587124 0.8569685 GAL3ST1 [1,] 0.8845151 PDGFRA SHC4 MATN4 TNR PNLIP PCDH15 FAM180A [1,] 0.6594077 0.8876408 0.009790091 0.2148693 0.04108205 0.1075733 0.2698467 NEU4 LHFPL3 CHST6 MEGF11 OLIG1 GPR17 RNF43 [1,] 0.2856533 0.5938882 0.6238268 0.1090868 0.8296958 0.5917444 -0.435638 RBPJL UGT8 PMEL SOX10 GAL3ST1 SULF2 CCNB1 [1,] -0.1101175 0.8814859 -0.05653651 0.8517942 0.8665949 -0.1274339 -0.4931099 MYT1 ACAN XYLT1 CSPG4 C1QL1 CKAP2 GJC3 [1,] 0.6166283 0.1083521 -0.1532883 0.7196438 0.336823 -0.6525218 -0.1210485 TOP2A PRKG2 BCAS1 SAPCD2 ZNF488 LRRN1 TMEM255B [1,] -0.0195238 -0.4824663 0.9974827 0.6061126 0.4965659 -0.426307 0.07905286 S100A3 PBK SUSD5 STK32A SULF1 PRKCQ DPYD [1,] 0.09222221 -0.01888503 -0.3814492 0.3316909 0.291499 0.8390872 0.8863703 GPSM2 LAD1 UGDH CKAP2L GJB1 EMID1 TGFA [1,] 0.9110727 0.07256941 0.06724674 0.05768831 0.83458 0.1593035 0.8341445 ADAM12 [1,] 0.4069115 markers cell 1 AQP4 ast 2 ALDH1L1 ast 3 BMPR1B ast 4 SLC14A1 ast 5 MLC1 ast 6 FGFR3 ast 7 SLC25A18 ast 8 GLI3 ast 9 GFAP ast 10 ACSBG1 ast 11 SLC4A4 ast 12 GJA1 ast 13 GJB6 ast 14 SLC39A12 ast 15 AGT ast 16 CHRDL1 ast 17 SLC1A2 ast 18 CLDN10 ast 19 SOX9 ast 20 PPP1R3C ast [1] "AQP4" "ALDH1L1" "BMPR1B" "SLC14A1" "MLC1" "FGFR3" [7] "SLC25A18" "GLI3" "GFAP" "ACSBG1" "SLC4A4" "GJA1" [13] "GJB6" "SLC39A12" "AGT" "CHRDL1" "SLC1A2" "CLDN10" [19] "SOX9" "PPP1R3C" "CLU" "SLC7A10" "ID4" "DIO2" [25] "SFXN5" "SLC6A11" "ATP13A4" "ACOT11" "SCARA3" "ALDOC" [31] "PLCD4" "ATP1B2" "NTSR2" "RGS20" "ELOVL2" "PAX6" [37] "ENTPD2" "NCAN" "KIAA1161" "ETNPPL" "PPAP2B" "LGR6" [43] "GPAM" "NWD1" "F3" "TTPA" "CBS" "LIX1" [49] "GRIN2C" "PHKG1" [1] "APOLD1" "EMCN" "SDPR" "PTPRB" "CDH5" "SLC38A5" "TM4SF1" [8] "NOSTRIN" "CYYR1" "MECOM" "MYCT1" "CLDN5" "ERG" "ABCB1" [15] "ICAM2" "FN1" "ESAM" "ATP10A" "VWF" "CD34" "PODXL" [22] "SLC19A3" "FLT1" "TBX3" "HMCN1" "ITM2A" "TEK" "ITGA1" [29] "TIE1" "ADCY4" "CLIC5" "ANXA1" "OCLN" "PALMD" "SEMA3G" [36] "ABCG2" "ROBO4" "SLC16A4" "SLC52A3" "SOX7" "SHE" "CA4" [43] "EBF1" "CD93" "KDR" "SLC2A1" "PTRF" "LEF1" "HIGD1B" [50] "FOXF2" [1] "CCL3" "CCL4" "CD14" "C1QB" "IL1A" "TREM2" "GPR183" [8] "CD83" "SLC2A5" "C1QC" "NCKAP1L" "CSF1R" "CD300A" "FCGR2A" [15] "LAPTM5" "HAVCR2" "C3AR1" "CX3CR1" "PTAFR" "C1QA" "FCGR1A" [22] "SELPLG" "PLEK" "CTSS" "CSF3R" "TYROBP" "SLA" "PTPN6" [29] "TLR2" "CD86" "GPR84" "LYZ" "MPEG1" "BCL2A1" "ITGAM" [36] "CD53" "IRF8" "IL10RA" "GPR34" "AIF1" "CD74" "PTPRC" [43] "RHOH" "BLNK" "TLR1" "C5AR1" "FCER1G" "DOCK2" "RGS1" [50] "ALOX5AP" [1] "RELN" "VIP" "GAD2" "TAC3" "DLX1" "PENK" [7] "SYT1" "TMEM130" "GAD1" "SYNPR" "STMN2" "GABRG2" [13] "GPR83" "SST" "ZMAT4" "SNAP25" "RAB3C" "NELL1" [19] "SCG2" "SYT4" "CNR1" "CLSTN2" "SPHKAP" "KCNQ5" [25] "PNOC" "ROBO2" "KCNC2" "GALNTL6" "VSNL1" "GRIN2A" [31] "GABRA1" "CHGB" "SRRM4" "ZNF804A" "KIAA1324" "BCL11A" [37] "SV2B" "HTR3A" "NPY" "PRMT8" "CNTNAP2" "GLRA2" [43] "SLC12A5" "SLC17A6" "CRH" "GRIA1" "GDA" "INA" [49] "RGS8" "CELF4" [1] "PLP1" "CLDN11" "ERMN" "UGT8" "MOG" "MOBP" [7] "MAG" "MBP" "OPALIN" "GJB1" "MYRF" "KLK6" [13] "FA2H" "CNP" "ENPP6" "LPAR1" "ERBB3" "TMEM125" [19] "ANLN" "ASPA" "QDPR" "S1PR5" "ENPP2" "NIPAL4" [25] "MAL" "BCAS1" "CRYAB" "LGI3" "SGK2" "GPR37" [31] "HHIP" "SLAIN1" "TMEM88B" "CNTN2" "NINJ2" "ST18" [37] "MAP6D1" "PLEKHH1" "PRR18" "TF" "TRIM59" "PEX5L" [43] "HAPLN2" "GJC2" "GJC3" "SEPT4" "PPP1R14A" "GPR62" [49] "SEC14L5" "GAL3ST1" [1] "PDGFRA" "SHC4" "MATN4" "TNR" "PNLIP" "PCDH15" [7] "FAM180A" "NEU4" "LHFPL3" "CHST6" "MEGF11" "OLIG1" [13] "GPR17" "RNF43" "RBPJL" "UGT8" "PMEL" "SOX10" [19] "GAL3ST1" "SULF2" "CCNB1" "MYT1" "ACAN" "XYLT1" [25] "CSPG4" "C1QL1" "CKAP2" "GJC3" "TOP2A" "PRKG2" [31] "BCAS1" "SAPCD2" "ZNF488" "LRRN1" "TMEM255B" "S100A3" [37] "PBK" "SUSD5" "STK32A" "SULF1" "PRKCQ" "DPYD" [43] "GPSM2" "LAD1" "UGDH" "CKAP2L" "GJB1" "EMID1" [49] "TGFA" "ADAM12" AQP4 ALDH1L1 BMPR1B SLC14A1 MLC1 FGFR3 SLC25A18 [1,] 0.7958953 0.07419527 0.4061147 0.6875915 0.7476287 0.2868527 0.302239 GLI3 GFAP ACSBG1 SLC4A4 GJA1 GJB6 SLC39A12 [1,] 0.4204516 0.9999001 0.2077684 -0.09074864 0.5208035 -0.5028409 0.1784168 AGT CHRDL1 SLC1A2 CLDN10 SOX9 PPP1R3C CLU [1,] 0.7350907 -0.6087144 -0.3359356 -0.3455259 0.5681326 0.1791119 0.5938866 SLC7A10 ID4 DIO2 SFXN5 SLC6A11 ATP13A4 ACOT11 [1,] -0.110352 0.6952727 -0.2188643 -0.1894126 -0.5592311 0.3663146 0.1992575 SCARA3 ALDOC PLCD4 ATP1B2 NTSR2 RGS20 ELOVL2 [1,] 0.2338075 -0.1107247 -0.5112359 0.1778165 0.4740656 0.1526715 0.1147339 PAX6 ENTPD2 NCAN KIAA1161 ETNPPL PPAP2B LGR6 [1,] 0.5797094 0.7823284 0.05518203 -0.1721708 0.3264465 0.5024131 0.0444335 GPAM NWD1 F3 TTPA CBS LIX1 GRIN2C [1,] -0.159156 0.430843 0.1665845 0.3924951 0.2509145 0.8404202 0.2054718 PHKG1 [1,] 0.7618352 APOLD1 EMCN SDPR PTPRB CDH5 SLC38A5 TM4SF1 [1,] 0.6397974 0.5150059 0.5503207 0.4286219 0.7509274 0.2792929 0.5732277 NOSTRIN CYYR1 MECOM MYCT1 CLDN5 ERG ABCB1 [1,] 0.5492278 0.5233367 0.6553751 0.4798552 0.6769395 0.5483382 0.5187547 ICAM2 FN1 ESAM ATP10A VWF CD34 PODXL [1,] 0.6892712 0.6866703 0.5985029 0.386112 0.6532856 0.4892499 0.6865958 SLC19A3 FLT1 TBX3 HMCN1 ITM2A TEK ITGA1 [1,] 0.3100597 0.682325 0.4185505 0.4729641 0.404837 0.4247323 0.6994108 TIE1 ADCY4 CLIC5 ANXA1 OCLN PALMD SEMA3G [1,] 0.4460777 0.5100022 0.2212121 0.4021003 0.1725926 0.4391917 0.5039709 ABCG2 ROBO4 SLC16A4 SLC52A3 SOX7 SHE CA4 [1,] 0.4910518 0.4063845 0.2065062 0.4868766 0.3217972 0.6208689 -0.1057804 EBF1 CD93 KDR SLC2A1 PTRF LEF1 HIGD1B [1,] 0.4929378 0.4586119 0.4572021 0.6991769 0.4608555 0.1165776 0.1667598 FOXF2 [1,] 0.1962837 CCL3 CCL4 CD14 C1QB IL1A TREM2 [1,] 0.009014479 -0.02049567 -0.6772439 -0.9027497 -0.147061 -0.8121957 GPR183 CD83 SLC2A5 C1QC NCKAP1L CSF1R CD300A [1,] -0.6689415 0.3230165 -0.882668 -0.9215579 -0.924154 -0.7685014 -0.8795061 FCGR2A LAPTM5 HAVCR2 C3AR1 CX3CR1 PTAFR [1,] -0.8366178 -0.9474317 -0.8554602 -0.8224433 -0.3634809 -0.7619302 C1QA FCGR1A SELPLG PLEK CTSS CSF3R [1,] -0.8550013 -0.6713506 -0.5294624 -0.6737376 -0.8570066 -0.7479062 TYROBP SLA PTPN6 TLR2 CD86 GPR84 [1,] -0.9002925 -0.8394877 -0.8757021 -0.8563525 -0.8670868 -0.3866831 LYZ MPEG1 BCL2A1 ITGAM CD53 IRF8 [1,] -0.5769851 -0.3112844 -0.5858728 -0.8377073 -0.8110169 -0.7524594 IL10RA GPR34 AIF1 CD74 PTPRC RHOH [1,] -0.8152008 -0.6202537 -0.8964808 -0.9569894 -0.9488961 -0.3987691 BLNK TLR1 C5AR1 FCER1G DOCK2 RGS1 [1,] -0.6580784 -0.8748194 -0.5982698 -0.8581698 -0.8865086 -0.6465002 ALOX5AP [1,] -0.8643056 RELN VIP GAD2 TAC3 DLX1 PENK [1,] 0.1166803 -0.6135118 -0.8276635 -0.7295642 -0.7836934 -0.4386146 SYT1 TMEM130 GAD1 SYNPR STMN2 GABRG2 [1,] -0.9587805 -0.6442915 -0.8571033 -0.5407849 -0.954468 -0.9428849 GPR83 SST ZMAT4 SNAP25 RAB3C NELL1 [1,] -0.4040754 -0.1924748 -0.8855612 -0.9937954 -0.7968844 -0.8839205 SCG2 SYT4 CNR1 CLSTN2 SPHKAP KCNQ5 PNOC [1,] -0.579349 -0.9400202 -0.4062468 -0.3223093 0.1236097 -0.9203101 -0.4488496 ROBO2 KCNC2 GALNTL6 VSNL1 GRIN2A GABRA1 [1,] -0.8036322 -0.8932601 -0.7152115 -0.8592326 -0.8891878 -0.9103732 CHGB SRRM4 ZNF804A KIAA1324 BCL11A SV2B HTR3A [1,] -0.141477 -0.8110747 -0.3509051 -0.6024863 -0.742308 -0.9386318 -0.1299354 NPY PRMT8 CNTNAP2 GLRA2 SLC12A5 SLC17A6 CRH [1,] 0.2984589 -0.80817 -0.9295066 -0.6637972 -0.9034275 -0.7684521 -0.4350317 GRIA1 GDA INA RGS8 CELF4 [1,] -0.05161995 -0.7713854 -0.8972024 -0.1695003 -0.8067627 PLP1 CLDN11 ERMN UGT8 MOG MOBP MAG [1,] 0.9305459 0.8798909 0.9359872 0.8949407 0.9124765 0.9624925 0.9200603 MBP OPALIN GJB1 MYRF KLK6 FA2H CNP [1,] 0.9924521 0.7476423 0.8302352 0.9282941 0.9099573 0.9222307 0.9139697 ENPP6 LPAR1 ERBB3 TMEM125 ANLN ASPA QDPR [1,] 0.8174142 0.9629297 0.920759 0.8009576 0.884949 0.9246854 0.8106579 S1PR5 ENPP2 NIPAL4 MAL BCAS1 CRYAB LGI3 [1,] 0.9338734 0.931507 0.8928996 0.9135844 0.9744962 0.7663222 0.5304539 SGK2 GPR37 HHIP SLAIN1 TMEM88B CNTN2 NINJ2 [1,] 0.8293518 0.8947933 0.8194185 0.8955728 0.6271867 0.932188 0.8435802 ST18 MAP6D1 PLEKHH1 PRR18 TF TRIM59 PEX5L [1,] 0.9443919 0.8858248 0.9312008 0.8960713 0.9043357 0.875323 0.7511829 HAPLN2 GJC2 GJC3 SEPT4 PPP1R14A GPR62 SEC14L5 [1,] 0.8260379 0.8721555 -0.1293849 0.9596247 0.8221449 0.8587124 0.8569685 GAL3ST1 [1,] 0.8845151 PDGFRA SHC4 MATN4 TNR PNLIP PCDH15 FAM180A [1,] 0.6594077 0.8876408 0.009790091 0.2148693 0.04108205 0.1075733 0.2698467 NEU4 LHFPL3 CHST6 MEGF11 OLIG1 GPR17 RNF43 [1,] 0.2856533 0.5938882 0.6238268 0.1090868 0.8296958 0.5917444 -0.435638 RBPJL UGT8 PMEL SOX10 GAL3ST1 SULF2 CCNB1 [1,] -0.1101175 0.8814859 -0.05653651 0.8517942 0.8665949 -0.1274339 -0.4931099 MYT1 ACAN XYLT1 CSPG4 C1QL1 CKAP2 GJC3 [1,] 0.6166283 0.1083521 -0.1532883 0.7196438 0.336823 -0.6525218 -0.1210485 TOP2A PRKG2 BCAS1 SAPCD2 ZNF488 LRRN1 TMEM255B [1,] -0.0195238 -0.4824663 0.9974827 0.6061126 0.4965659 -0.426307 0.07905286 S100A3 PBK SUSD5 STK32A SULF1 PRKCQ DPYD [1,] 0.09222221 -0.01888503 -0.3814492 0.3316909 0.291499 0.8390872 0.8863703 GPSM2 LAD1 UGDH CKAP2L GJB1 EMID1 TGFA [1,] 0.9110727 0.07256941 0.06724674 0.05768831 0.83458 0.1593035 0.8341445 ADAM12 [1,] 0.4069115 [1] "AQP4" "ALDH1L1" "BMPR1B" "SLC14A1" "MLC1" "FGFR3" [7] "SLC25A18" "GLI3" "GFAP" "ACSBG1" "SLC4A4" "GJA1" [13] "GJB6" "SLC39A12" "AGT" "CHRDL1" "SLC1A2" "CLDN10" [19] "SOX9" "PPP1R3C" "CLU" "SLC7A10" "ID4" "DIO2" [25] "SFXN5" "SLC6A11" "ATP13A4" "ACOT11" "SCARA3" "ALDOC" [31] "PLCD4" "ATP1B2" "NTSR2" "RGS20" "ELOVL2" "PAX6" [37] "ENTPD2" "NCAN" "KIAA1161" "ETNPPL" "PPAP2B" "LGR6" [43] "GPAM" "NWD1" "F3" "TTPA" "CBS" "LIX1" [49] "GRIN2C" "PHKG1" [1] "APOLD1" "EMCN" "SDPR" "PTPRB" "CDH5" "SLC38A5" "TM4SF1" [8] "NOSTRIN" "CYYR1" "MECOM" "MYCT1" "CLDN5" "ERG" "ABCB1" [15] "ICAM2" "FN1" "ESAM" "ATP10A" "VWF" "CD34" "PODXL" [22] "SLC19A3" "FLT1" "TBX3" "HMCN1" "ITM2A" "TEK" "ITGA1" [29] "TIE1" "ADCY4" "CLIC5" "ANXA1" "OCLN" "PALMD" "SEMA3G" [36] "ABCG2" "ROBO4" "SLC16A4" "SLC52A3" "SOX7" "SHE" "CA4" [43] "EBF1" "CD93" "KDR" "SLC2A1" "PTRF" "LEF1" "HIGD1B" [50] "FOXF2" [1] "CCL3" "CCL4" "CD14" "C1QB" "IL1A" "TREM2" "GPR183" [8] "CD83" "SLC2A5" "C1QC" "NCKAP1L" "CSF1R" "CD300A" "FCGR2A" [15] "LAPTM5" "HAVCR2" "C3AR1" "CX3CR1" "PTAFR" "C1QA" "FCGR1A" [22] "SELPLG" "PLEK" "CTSS" "CSF3R" "TYROBP" "SLA" "PTPN6" [29] "TLR2" "CD86" "GPR84" "LYZ" "MPEG1" "BCL2A1" "ITGAM" [36] "CD53" "IRF8" "IL10RA" "GPR34" "AIF1" "CD74" "PTPRC" [43] "RHOH" "BLNK" "TLR1" "C5AR1" "FCER1G" "DOCK2" "RGS1" [50] "ALOX5AP" [1] "RELN" "VIP" "GAD2" "TAC3" "DLX1" "PENK" [7] "SYT1" "TMEM130" "GAD1" "SYNPR" "STMN2" "GABRG2" [13] "GPR83" "SST" "ZMAT4" "SNAP25" "RAB3C" "NELL1" [19] "SCG2" "SYT4" "CNR1" "CLSTN2" "SPHKAP" "KCNQ5" [25] "PNOC" "ROBO2" "KCNC2" "GALNTL6" "VSNL1" "GRIN2A" [31] "GABRA1" "CHGB" "SRRM4" "ZNF804A" "KIAA1324" "BCL11A" [37] "SV2B" "HTR3A" "NPY" "PRMT8" "CNTNAP2" "GLRA2" [43] "SLC12A5" "SLC17A6" "CRH" "GRIA1" "GDA" "INA" [49] "RGS8" "CELF4" [1] "PLP1" "CLDN11" "ERMN" "UGT8" "MOG" "MOBP" [7] "MAG" "MBP" "OPALIN" "GJB1" "MYRF" "KLK6" [13] "FA2H" "CNP" "ENPP6" "LPAR1" "ERBB3" "TMEM125" [19] "ANLN" "ASPA" "QDPR" "S1PR5" "ENPP2" "NIPAL4" [25] "MAL" "BCAS1" "CRYAB" "LGI3" "SGK2" "GPR37" [31] "HHIP" "SLAIN1" "TMEM88B" "CNTN2" "NINJ2" "ST18" [37] "MAP6D1" "PLEKHH1" "PRR18" "TF" "TRIM59" "PEX5L" [43] "HAPLN2" "GJC2" "GJC3" "SEPT4" "PPP1R14A" "GPR62" [49] "SEC14L5" "GAL3ST1" [1] "PDGFRA" "SHC4" "MATN4" "TNR" "PNLIP" "PCDH15" [7] "FAM180A" "NEU4" "LHFPL3" "CHST6" "MEGF11" "OLIG1" [13] "GPR17" "RNF43" "RBPJL" "UGT8" "PMEL" "SOX10" [19] "GAL3ST1" "SULF2" "CCNB1" "MYT1" "ACAN" "XYLT1" [25] "CSPG4" "C1QL1" "CKAP2" "GJC3" "TOP2A" "PRKG2" [31] "BCAS1" "SAPCD2" "ZNF488" "LRRN1" "TMEM255B" "S100A3" [37] "PBK" "SUSD5" "STK32A" "SULF1" "PRKCQ" "DPYD" [43] "GPSM2" "LAD1" "UGDH" "CKAP2L" "GJB1" "EMID1" [49] "TGFA" "ADAM12" AQP4 ALDH1L1 BMPR1B SLC14A1 MLC1 FGFR3 SLC25A18 [1,] 0.7958953 0.07419527 0.4061147 0.6875915 0.7476287 0.2868527 0.302239 GLI3 GFAP ACSBG1 SLC4A4 GJA1 GJB6 SLC39A12 [1,] 0.4204516 0.9999001 0.2077684 -0.09074864 0.5208035 -0.5028409 0.1784168 AGT CHRDL1 SLC1A2 CLDN10 SOX9 PPP1R3C CLU [1,] 0.7350907 -0.6087144 -0.3359356 -0.3455259 0.5681326 0.1791119 0.5938866 SLC7A10 ID4 DIO2 SFXN5 SLC6A11 ATP13A4 ACOT11 [1,] -0.110352 0.6952727 -0.2188643 -0.1894126 -0.5592311 0.3663146 0.1992575 SCARA3 ALDOC PLCD4 ATP1B2 NTSR2 RGS20 ELOVL2 [1,] 0.2338075 -0.1107247 -0.5112359 0.1778165 0.4740656 0.1526715 0.1147339 PAX6 ENTPD2 NCAN KIAA1161 ETNPPL PPAP2B LGR6 [1,] 0.5797094 0.7823284 0.05518203 -0.1721708 0.3264465 0.5024131 0.0444335 GPAM NWD1 F3 TTPA CBS LIX1 GRIN2C [1,] -0.159156 0.430843 0.1665845 0.3924951 0.2509145 0.8404202 0.2054718 PHKG1 [1,] 0.7618352 APOLD1 EMCN SDPR PTPRB CDH5 SLC38A5 TM4SF1 [1,] 0.6397974 0.5150059 0.5503207 0.4286219 0.7509274 0.2792929 0.5732277 NOSTRIN CYYR1 MECOM MYCT1 CLDN5 ERG ABCB1 [1,] 0.5492278 0.5233367 0.6553751 0.4798552 0.6769395 0.5483382 0.5187547 ICAM2 FN1 ESAM ATP10A VWF CD34 PODXL [1,] 0.6892712 0.6866703 0.5985029 0.386112 0.6532856 0.4892499 0.6865958 SLC19A3 FLT1 TBX3 HMCN1 ITM2A TEK ITGA1 [1,] 0.3100597 0.682325 0.4185505 0.4729641 0.404837 0.4247323 0.6994108 TIE1 ADCY4 CLIC5 ANXA1 OCLN PALMD SEMA3G [1,] 0.4460777 0.5100022 0.2212121 0.4021003 0.1725926 0.4391917 0.5039709 ABCG2 ROBO4 SLC16A4 SLC52A3 SOX7 SHE CA4 [1,] 0.4910518 0.4063845 0.2065062 0.4868766 0.3217972 0.6208689 -0.1057804 EBF1 CD93 KDR SLC2A1 PTRF LEF1 HIGD1B [1,] 0.4929378 0.4586119 0.4572021 0.6991769 0.4608555 0.1165776 0.1667598 FOXF2 [1,] 0.1962837 CCL3 CCL4 CD14 C1QB IL1A TREM2 [1,] 0.009014479 -0.02049567 -0.6772439 -0.9027497 -0.147061 -0.8121957 GPR183 CD83 SLC2A5 C1QC NCKAP1L CSF1R CD300A [1,] -0.6689415 0.3230165 -0.882668 -0.9215579 -0.924154 -0.7685014 -0.8795061 FCGR2A LAPTM5 HAVCR2 C3AR1 CX3CR1 PTAFR [1,] -0.8366178 -0.9474317 -0.8554602 -0.8224433 -0.3634809 -0.7619302 C1QA FCGR1A SELPLG PLEK CTSS CSF3R [1,] -0.8550013 -0.6713506 -0.5294624 -0.6737376 -0.8570066 -0.7479062 TYROBP SLA PTPN6 TLR2 CD86 GPR84 [1,] -0.9002925 -0.8394877 -0.8757021 -0.8563525 -0.8670868 -0.3866831 LYZ MPEG1 BCL2A1 ITGAM CD53 IRF8 [1,] -0.5769851 -0.3112844 -0.5858728 -0.8377073 -0.8110169 -0.7524594 IL10RA GPR34 AIF1 CD74 PTPRC RHOH [1,] -0.8152008 -0.6202537 -0.8964808 -0.9569894 -0.9488961 -0.3987691 BLNK TLR1 C5AR1 FCER1G DOCK2 RGS1 [1,] -0.6580784 -0.8748194 -0.5982698 -0.8581698 -0.8865086 -0.6465002 ALOX5AP [1,] -0.8643056 RELN VIP GAD2 TAC3 DLX1 PENK [1,] 0.1166803 -0.6135118 -0.8276635 -0.7295642 -0.7836934 -0.4386146 SYT1 TMEM130 GAD1 SYNPR STMN2 GABRG2 [1,] -0.9587805 -0.6442915 -0.8571033 -0.5407849 -0.954468 -0.9428849 GPR83 SST ZMAT4 SNAP25 RAB3C NELL1 [1,] -0.4040754 -0.1924748 -0.8855612 -0.9937954 -0.7968844 -0.8839205 SCG2 SYT4 CNR1 CLSTN2 SPHKAP KCNQ5 PNOC [1,] -0.579349 -0.9400202 -0.4062468 -0.3223093 0.1236097 -0.9203101 -0.4488496 ROBO2 KCNC2 GALNTL6 VSNL1 GRIN2A GABRA1 [1,] -0.8036322 -0.8932601 -0.7152115 -0.8592326 -0.8891878 -0.9103732 CHGB SRRM4 ZNF804A KIAA1324 BCL11A SV2B HTR3A [1,] -0.141477 -0.8110747 -0.3509051 -0.6024863 -0.742308 -0.9386318 -0.1299354 NPY PRMT8 CNTNAP2 GLRA2 SLC12A5 SLC17A6 CRH [1,] 0.2984589 -0.80817 -0.9295066 -0.6637972 -0.9034275 -0.7684521 -0.4350317 GRIA1 GDA INA RGS8 CELF4 [1,] -0.05161995 -0.7713854 -0.8972024 -0.1695003 -0.8067627 PLP1 CLDN11 ERMN UGT8 MOG MOBP MAG [1,] 0.9305459 0.8798909 0.9359872 0.8949407 0.9124765 0.9624925 0.9200603 MBP OPALIN GJB1 MYRF KLK6 FA2H CNP [1,] 0.9924521 0.7476423 0.8302352 0.9282941 0.9099573 0.9222307 0.9139697 ENPP6 LPAR1 ERBB3 TMEM125 ANLN ASPA QDPR [1,] 0.8174142 0.9629297 0.920759 0.8009576 0.884949 0.9246854 0.8106579 S1PR5 ENPP2 NIPAL4 MAL BCAS1 CRYAB LGI3 [1,] 0.9338734 0.931507 0.8928996 0.9135844 0.9744962 0.7663222 0.5304539 SGK2 GPR37 HHIP SLAIN1 TMEM88B CNTN2 NINJ2 [1,] 0.8293518 0.8947933 0.8194185 0.8955728 0.6271867 0.932188 0.8435802 ST18 MAP6D1 PLEKHH1 PRR18 TF TRIM59 PEX5L [1,] 0.9443919 0.8858248 0.9312008 0.8960713 0.9043357 0.875323 0.7511829 HAPLN2 GJC2 GJC3 SEPT4 PPP1R14A GPR62 SEC14L5 [1,] 0.8260379 0.8721555 -0.1293849 0.9596247 0.8221449 0.8587124 0.8569685 GAL3ST1 [1,] 0.8845151 PDGFRA SHC4 MATN4 TNR PNLIP PCDH15 FAM180A [1,] 0.6594077 0.8876408 0.009790091 0.2148693 0.04108205 0.1075733 0.2698467 NEU4 LHFPL3 CHST6 MEGF11 OLIG1 GPR17 RNF43 [1,] 0.2856533 0.5938882 0.6238268 0.1090868 0.8296958 0.5917444 -0.435638 RBPJL UGT8 PMEL SOX10 GAL3ST1 SULF2 CCNB1 [1,] -0.1101175 0.8814859 -0.05653651 0.8517942 0.8665949 -0.1274339 -0.4931099 MYT1 ACAN XYLT1 CSPG4 C1QL1 CKAP2 GJC3 [1,] 0.6166283 0.1083521 -0.1532883 0.7196438 0.336823 -0.6525218 -0.1210485 TOP2A PRKG2 BCAS1 SAPCD2 ZNF488 LRRN1 TMEM255B [1,] -0.0195238 -0.4824663 0.9974827 0.6061126 0.4965659 -0.426307 0.07905286 S100A3 PBK SUSD5 STK32A SULF1 PRKCQ DPYD [1,] 0.09222221 -0.01888503 -0.3814492 0.3316909 0.291499 0.8390872 0.8863703 GPSM2 LAD1 UGDH CKAP2L GJB1 EMID1 TGFA [1,] 0.9110727 0.07256941 0.06724674 0.05768831 0.83458 0.1593035 0.8341445 ADAM12 [1,] 0.4069115 Saving _problems/test-findCells-16.R markers cell 1 GPR98 ast 2 AQP4 ast 3 BMPR1B ast 4 ETNPPL ast 5 GJB6 ast 6 GJA1 ast 7 FGFR3 ast 8 SLC25A18 ast 9 SLC1A2 ast 10 SDC4 ast 11 GFAP ast 12 EDNRB ast 13 RNF219-AS1 ast 14 LINC00499 ast 15 ALDH1L1 ast 16 CHI3L1 ast 17 CLDN10 ast 18 AGT ast 19 SLCO1C1 ast 20 SLC4A4 ast [1] "AQP4" "BMPR1B" "ETNPPL" "GJB6" "GJA1" "FGFR3" [7] "SLC25A18" "SLC1A2" "GFAP" "ALDH1L1" "CLDN10" "AGT" [13] "SLC4A4" "GPAM" "SLC14A1" "ID4" "ACSBG1" "MLC1" [19] "SLC39A12" "NCAN" "ATP1B2" "CLU" "RGS20" "GLI3" [25] "SOX9" "ACOT11" "SFXN5" "ELOVL2" "SLC7A10" "SCARA3" [31] "PAX6" "SLC6A11" "F3" "DIO2" "ALDOC" "ATP13A4" [37] "PPAP2B" "LIX1" "PPP1R3C" "CHRDL1" "GRIN2C" "RNF43" [43] "NTSR2" "NWD1" "KIAA1161" "TTPA" "LGR6" "EMID1" [49] "ENTPD2" "PLCD4" [1] "APOLD1" "SDPR" "CD34" "TM4SF1" "MECOM" "VWF" "ITGA1" [8] "ABCB1" "ABCG2" "ATP10A" "ERG" "HIGD1B" "PODXL" "MYCT1" [15] "EBF1" "EMCN" "CLDN5" "NOSTRIN" "ESAM" "PTPRB" "TBX3" [22] "PALMD" "LEF1" "CDH5" "SEMA3G" "FN1" "CYYR1" "ADCY4" [29] "ANXA1" "SLC38A5" "SLC2A1" "TIE1" "ROBO4" "CLIC5" "SOX7" [36] "CA4" "ICAM2" "PTRF" "HMCN1" "SLC52A3" "FOXF2" "SLC16A4" [43] "ITM2A" "SLC19A3" "OCLN" "SHE" "KDR" "ISG15" "FLT1" [50] "AGRN" [1] "CCL3" "CCL4" "CD74" "C1QB" "TLR1" "SLA" "IL1A" [8] "HAVCR2" "PLEK" "C3AR1" "TREM2" "CD14" "CD300A" "PTPRC" [15] "PTAFR" "TLR2" "CD83" "PTPN6" "SLC2A5" "BCL2A1" "GPR183" [22] "MPEG1" "IL10RA" "RHOH" "GPR34" "CD53" "BLNK" "TYROBP" [29] "CX3CR1" "C5AR1" "C1QA" "SELPLG" "LAPTM5" "CSF3R" "FCER1G" [36] "C1QC" "CSF1R" "NCKAP1L" "AIF1" "ALOX5AP" "DOCK2" "ITGAM" [43] "LYZ" "FCGR1A" "CD86" "CTSS" "IRF8" "FCGR2A" "RGS1" [50] "GPR84" [1] "SYNPR" "RELN" "CNR1" "GAD2" "RAB3C" "SYT1" [7] "KCNC2" "ZMAT4" "CHGB" "GABRA1" "GAD1" "TAC3" [13] "SCG2" "GALNTL6" "STMN2" "SNAP25" "INA" "SRRM4" [19] "DLX1" "GDA" "SYT4" "GPR83" "KCNQ5" "GABRG2" [25] "ZNF804A" "SPHKAP" "VSNL1" "VIP" "ROBO2" "GRIA1" [31] "CLSTN2" "PRMT8" "GRIN2A" "SLC12A5" "TMEM130" "GLRA2" [37] "BCL11A" "SV2B" "CNTNAP2" "KIAA1324" "CELF4" "PNOC" [43] "RGS8" "NELL1" "PENK" "CRH" "SST" "SULF1" [49] "SLC17A6" [1] "UGT8" "PLP1" "ERMN" "CLDN11" "MAG" "TF" [7] "KLK6" "CNTN2" "MOBP" "ST18" "ERBB3" "MYRF" [13] "MOG" "SLAIN1" "OPALIN" "CNP" "ENPP2" "HHIP" [19] "QDPR" "ANLN" "GJB1" "LPAR1" "BCAS1" "MBP" [25] "ZNF488" "SEPT4" "NINJ2" "FA2H" "TRIM59" "PLEKHH1" [31] "GPR37" "MAP6D1" "SGK2" "PEX5L" "TGFA" "LHFPL3" [37] "ASPA" "S1PR5" "CRYAB" "HAPLN2" "OLIG1" "PPP1R14A" [43] "MAL" "LGI3" "TMEM125" "SEC14L5" "SHC4" "PRR18" [49] "GPR62" "XYLT1" [1] "TGFA" "XYLT1" "TNR" "MEGF11" "PDGFRA" "GPSM2" "LRRN1" "PCDH15" [9] "SHC4" "LHFPL3" "STK32A" AQP4 BMPR1B ETNPPL GJB6 GJA1 FGFR3 SLC25A18 [1,] 0.8110958 0.4558726 0.3635297 -0.4529245 0.5437528 0.3229158 0.3425693 SLC1A2 GFAP ALDH1L1 CLDN10 AGT SLC4A4 GPAM [1,] -0.2758163 0.9965319 0.1213556 -0.2941993 0.7521001 -0.03427905 -0.1198305 SLC14A1 ID4 ACSBG1 MLC1 SLC39A12 NCAN ATP1B2 [1,] 0.689667 0.7192683 0.2528807 0.7706673 0.2206066 0.07799746 0.2064538 CLU RGS20 GLI3 SOX9 ACOT11 SFXN5 ELOVL2 [1,] 0.6459453 0.2018982 0.4417386 0.5894401 0.2118415 -0.134377 0.1534894 SLC7A10 SCARA3 PAX6 SLC6A11 F3 DIO2 [1,] -0.06366211 0.2689596 0.6051979 -0.5152426 0.2002923 -0.1745948 ALDOC ATP13A4 PPAP2B LIX1 PPP1R3C CHRDL1 GRIN2C [1,] -0.05345503 0.3973064 0.5327218 0.8471677 0.2131001 -0.5681024 0.2288423 RNF43 NTSR2 NWD1 KIAA1161 TTPA LGR6 EMID1 [1,] -0.1638502 0.5108031 0.4348144 -0.148001 0.4056622 0.0441886 0.3769222 ENTPD2 PLCD4 [1,] 0.7809743 -0.4957382 APOLD1 SDPR CD34 TM4SF1 MECOM VWF ITGA1 [1,] 0.6163389 0.5978495 0.5326788 0.5366287 0.6744565 0.6612318 0.6950395 ABCB1 ABCG2 ATP10A ERG HIGD1B PODXL MYCT1 [1,] 0.573545 0.56837 0.4499229 0.5719672 0.2372105 0.7089549 0.4968794 EBF1 EMCN CLDN5 NOSTRIN ESAM PTPRB TBX3 [1,] 0.4988658 0.5834311 0.6687346 0.594125 0.6399418 0.5181752 0.4230466 PALMD LEF1 CDH5 SEMA3G FN1 CYYR1 ADCY4 [1,] 0.4200901 0.1422597 0.7416704 0.53409 0.6207467 0.5844303 0.5225097 ANXA1 SLC38A5 SLC2A1 TIE1 ROBO4 CLIC5 SOX7 [1,] 0.3284758 0.3446117 0.6882632 0.4756916 0.4265561 0.2776498 0.3304382 CA4 ICAM2 PTRF HMCN1 SLC52A3 FOXF2 SLC16A4 [1,] -0.03659944 0.6860142 0.4074694 0.4823999 0.516932 0.2411936 0.1788907 ITM2A SLC19A3 OCLN SHE KDR ISG15 FLT1 [1,] 0.5269407 0.3308066 0.1389043 0.632519 0.441094 0.09610335 0.6765837 AGRN [1,] -0.03401777 CCL3 CCL4 CD74 C1QB TLR1 SLA IL1A [1,] -0.007487 0.02118147 0.9649256 0.8957513 0.8826419 0.8434514 0.1494772 HAVCR2 PLEK C3AR1 TREM2 CD14 CD300A PTPRC [1,] 0.8596111 0.6815965 0.8313275 0.8212349 0.6764203 0.8748127 0.9492006 PTAFR TLR2 CD83 PTPN6 SLC2A5 BCL2A1 GPR183 [1,] 0.7728316 0.8496411 -0.3284935 0.8807133 0.877978 0.5783844 0.6604113 MPEG1 IL10RA RHOH GPR34 CD53 BLNK TYROBP [1,] 0.3334534 0.810839 0.3957488 0.6379527 0.8100521 0.674268 0.9044603 CX3CR1 C5AR1 C1QA SELPLG LAPTM5 CSF3R FCER1G [1,] 0.3870798 0.5806463 0.8477989 0.5420627 0.9488412 0.751534 0.8548888 C1QC CSF1R NCKAP1L AIF1 ALOX5AP DOCK2 ITGAM [1,] 0.9186143 0.7824287 0.9304468 0.8958361 0.8631622 0.8932764 0.8433104 LYZ FCGR1A CD86 CTSS IRF8 FCGR2A RGS1 [1,] 0.5716486 0.6719383 0.8711768 0.8586445 0.7642242 0.8295238 0.6254901 GPR84 [1,] 0.3829798 SYNPR RELN CNR1 GAD2 RAB3C SYT1 KCNC2 [1,] 0.5610838 -0.09879741 0.4301093 0.8209682 0.8113917 0.9593777 0.8840007 ZMAT4 CHGB GABRA1 GAD1 TAC3 SCG2 GALNTL6 [1,] 0.8788734 0.170766 0.9021536 0.854111 0.7190075 0.5869459 0.7011793 STMN2 SNAP25 INA SRRM4 DLX1 GDA SYT4 [1,] 0.9564107 0.996377 0.8864838 0.7982178 0.7772051 0.77533 0.9413905 GPR83 KCNQ5 GABRG2 ZNF804A SPHKAP VSNL1 VIP [1,] 0.4184109 0.9173621 0.9398311 0.3735599 -0.09485828 0.8432113 0.6208609 ROBO2 GRIA1 CLSTN2 PRMT8 GRIN2A SLC12A5 TMEM130 [1,] 0.8124662 0.08136045 0.3490513 0.7967761 0.8973211 0.901131 0.6629047 GLRA2 BCL11A SV2B CNTNAP2 KIAA1324 CELF4 PNOC [1,] 0.6530361 0.7512794 0.9379667 0.9240751 0.6224057 0.8148582 0.4445479 RGS8 NELL1 PENK CRH SST SULF1 SLC17A6 [1,] 0.1948555 0.8777811 0.4438652 0.4376938 0.2049082 -0.09788945 0.7522358 UGT8 PLP1 ERMN CLDN11 MAG TF KLK6 [1,] 0.8984999 0.9340566 0.9387198 0.8833412 0.9219767 0.9070035 0.9131039 CNTN2 MOBP ST18 ERBB3 MYRF MOG SLAIN1 [1,] 0.9339807 0.9629815 0.9467016 0.9230465 0.9296378 0.9151721 0.8983024 OPALIN CNP ENPP2 HHIP QDPR ANLN GJB1 [1,] 0.7500242 0.9166345 0.9348318 0.8224824 0.8136025 0.887996 0.8334718 LPAR1 BCAS1 MBP ZNF488 SEPT4 NINJ2 FA2H [1,] 0.9632022 0.973744 0.9911972 0.5318679 0.9603758 0.8465525 0.9242576 TRIM59 PLEKHH1 GPR37 MAP6D1 SGK2 PEX5L TGFA [1,] 0.8784727 0.9328356 0.8979917 0.888852 0.83214 0.7538578 0.8550625 LHFPL3 ASPA S1PR5 CRYAB HAPLN2 OLIG1 PPP1R14A [1,] 0.5611603 0.9271646 0.9358559 0.7682856 0.8274815 0.8338683 0.823815 MAL LGI3 TMEM125 SEC14L5 SHC4 PRR18 GPR62 [1,] 0.9160596 0.5300182 0.8039058 0.8588752 0.9138498 0.897822 0.8613958 XYLT1 [1,] -0.157179 TGFA XYLT1 TNR MEGF11 PDGFRA GPSM2 [1,] -0.6838901 -0.5454421 -0.9145284 -0.7326635 -0.8509817 -0.5473637 LRRN1 PCDH15 SHC4 LHFPL3 STK32A [1,] -0.2683434 -0.785268 -0.4719324 -0.6837027 -0.7269714 markers cell 1 AQP4 ast 2 ALDH1L1 ast 3 BMPR1B ast 4 SLC14A1 ast 5 MLC1 ast 6 FGFR3 ast 7 SLC25A18 ast 8 GLI3 ast 9 GFAP ast 10 ACSBG1 ast 11 SLC4A4 ast 12 GJA1 ast 13 GJB6 ast 14 SLC39A12 ast 15 AGT ast 16 CHRDL1 ast 17 SLC1A2 ast 18 CLDN10 ast 19 SOX9 ast 20 PPP1R3C ast [1] "AQP4" "ALDH1L1" "BMPR1B" "SLC14A1" "MLC1" "FGFR3" [7] "SLC25A18" "GLI3" "GFAP" "ACSBG1" [1] "APOLD1" "EMCN" "SDPR" "PTPRB" "CDH5" "SLC38A5" "TM4SF1" [8] "NOSTRIN" "CYYR1" "MECOM" [1] "CCL3" "CCL4" "CD14" "C1QB" "IL1A" "TREM2" "GPR183" "CD83" [9] "SLC2A5" "C1QC" [1] "RELN" "VIP" "GAD2" "TAC3" "DLX1" "PENK" "SYT1" [8] "TMEM130" "GAD1" "SYNPR" [1] "PLP1" "CLDN11" "ERMN" "UGT8" "MOG" "MOBP" "MAG" "MBP" [9] "OPALIN" "GJB1" [1] "PDGFRA" "SHC4" "MATN4" "TNR" "PNLIP" "PCDH15" "FAM180A" [8] "NEU4" "LHFPL3" "CHST6" AQP4 ALDH1L1 BMPR1B SLC14A1 MLC1 FGFR3 SLC25A18 [1,] 0.7941101 0.07078746 0.402535 0.6863333 0.7467251 0.286604 0.2995718 GLI3 GFAP ACSBG1 [1,] 0.4181636 0.9999898 0.2065943 APOLD1 EMCN SDPR PTPRB CDH5 SLC38A5 TM4SF1 [1,] 0.9772863 0.237461 0.33113 0.1980917 0.6152634 0.1398557 0.439662 NOSTRIN CYYR1 MECOM [1,] 0.3959393 0.2593875 0.4232467 CCL3 CCL4 CD14 C1QB IL1A TREM2 [1,] 0.0424243 0.008573964 -0.7545699 -0.9982298 -0.09487337 -0.6818923 GPR183 CD83 SLC2A5 C1QC [1,] -0.4849011 0.2515272 -0.832685 -0.9697434 RELN VIP GAD2 TAC3 DLX1 PENK [1,] 0.08074022 -0.6412437 -0.7936034 -0.6858533 -0.7774947 -0.3876646 SYT1 TMEM130 GAD1 SYNPR [1,] -0.9993222 -0.6750648 -0.8090913 -0.5983282 PLP1 CLDN11 ERMN UGT8 MOG MOBP MAG [1,] 0.9280322 0.8772647 0.9341143 0.8920195 0.9109118 0.9629947 0.9187052 MBP OPALIN GJB1 [1,] 0.993316 0.7477848 0.8278752 PDGFRA SHC4 MATN4 TNR PNLIP PCDH15 FAM180A [1,] 0.7945197 0.2972449 -0.04405889 0.9769722 0.03368602 0.8522883 -0.08947751 NEU4 LHFPL3 CHST6 [1,] 0.3902661 0.6217792 0.5945977 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-findCells.R:16:2'): findCells accurately estimates cell type proportions on the ABA data with combined data ── Expected `ct_res` to be identical to `ct_res_marker_df`. Differences: Objects equal but not identical alternative interface to findCells works the same [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [30s/31s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/localhost/ripley/R/packages/tests-MKL/BRETIGEA.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:10.18, 58.57 + 5.57