* using log directory ‘/data/localhost/ripley/R/packages/tests-MKL/BOLDconnectR.Rcheck’ * using R Under development (unstable) (2026-09-13 r90534) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-09-14 07:54:26 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘BOLDconnectR/DESCRIPTION’ ... OK * this is package ‘BOLDconnectR’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: 'msa' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BOLDconnectR’ can be installed ... [34s/72s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [11s/32s] OK * checking whether the package can be loaded with stated dependencies ... [11s/32s] OK * checking whether the package can be unloaded cleanly ... [11s/39s] OK * checking whether the namespace can be loaded with stated dependencies ... [11s/30s] OK * checking whether the namespace can be unloaded cleanly ... [10s/23s] OK * checking loading without being on the library search path ... [11s/30s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [45s/75s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [11s/21s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [21s/55s] ERROR Error(s) in re-building vignettes: --- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown Quitting from boldconnectr_workflow.Rmd:84-96 [fetch-data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download.file()`: ! cannot open URL 'https://portal.boldsystems.org/api/documents/eAErSaywSk_NKy22Ci4pSi0oyU9OLchIzCkttk4rzckBALodDBg%3D/download?format=tsv&fields=processid,marker_code' --- Backtrace: ▆ 1. └─BOLDconnectR::bold.public.search(taxonomy = list("Streptocephalus")) 2. └─BOLDconnectR:::obtain_data(step4) 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. └─utils::download.file(download_url, destfile = temp_file, quiet = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics: cannot open URL 'https://portal.boldsystems.org/api/documents/eAErSaywSk_NKy22Ci4pSi0oyU9OLchIzCkttk4rzckBALodDBg%3D/download?format=tsv&fields=processid,marker_code' --- failed re-building ‘boldconnectr_workflow.Rmd’ SUMMARY: processing the following file failed: ‘boldconnectr_workflow.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [5s/10s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-MKL/BOLDconnectR.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 10:44.41, 286.32 + 21.02