* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/spCF.Rcheck’ * using R Under development (unstable) (2026-10-05 r90641) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-10-06 03:02:21 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘spCF/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘spCF’ version ‘0.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spCF’ can be installed ... [44s/66s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s/47s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [8s/14s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [26s/52s] [26s/52s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(spCF) > > test_check("spCF") Saving _problems/test-predict-14.R Loading required package: shiny Attaching package: 'bslib' The following object is masked from 'package:utils': page terra 1.9.50 Attaching package: 'terra' The following objects are masked from 'package:testthat': compare, describe Linking to GEOS 3.14.1, GDAL 3.12.4, PROJ 9.8.1; sf_use_s2() is TRUE `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See for more information. [ FAIL 1 | WARN 0 | SKIP 11 | PASS 369 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (10): 'test-add_learn.R:17:3', 'test-mapping.R:17:3', 'test-mapping.R:38:3', 'test-mapping.R:57:3', 'test-mapping.R:75:3', 'test-mapping.R:113:3', 'test-mapping.R:143:3', 'test-mapping.R:178:3', 'test-spCFmap.R:5:3', 'test-spCFmap.R:20:3' • lightgbm is installed, so the guard cannot be exercised (1): 'test-add_learn.R:43:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-predict.R:14:3'): predict.cf_lm agrees exactly with cf_lm(coords0 = ...) and is batch-invariant ── Expected `as.matrix(pa)` to be identical to `as.matrix(p)`. Differences: actual | expected [10] 1.708592705882265639 | 1.708592705882265639 [10] [11] 2.967599729412906839 | 2.967599729412906839 [11] [12] 1.247424140155617200 | 1.247424140155617200 [12] [13] 2.697749006465575583 - 2.697749006465576027 [13] [14] 1.841391285027613511 | 1.841391285027613511 [14] [15] 0.188769649700979342 - 0.188769649700979120 [15] [16] 1.581847686371490536 | 1.581847686371490536 [16] [17] -0.269900449263514863 | -0.269900449263514863 [17] [18] 1.538336649420525948 | 1.538336649420525948 [18] actual | expected [50] 0.361725145443315299 | 0.361725145443315299 [50] [51] 0.342184378405505640 | 0.342184378405505640 [51] [52] 0.369504460765786469 | 0.369504460765786469 [52] [53] 0.336109796097233182 - 0.336109796097233127 [53] [54] 0.342598284090666005 | 0.342598284090666005 [54] [55] 0.398746341931747406 | 0.398746341931747406 [55] [56] 0.365497813621252665 | 0.365497813621252665 [56] actual | expected [90] 0.776850476418886271 | 0.776850476418886271 [90] [91] 2.086191180299340253 | 2.086191180299340253 [91] [92] 0.295643722323069569 | 0.295643722323069569 [92] [93] 1.831987544468476781 - 1.831987544468477225 [93] [94] 0.958916585521305098 | 0.958916585521305098 [94] [95] -0.838332862529745149 - -0.838332862529745371 [95] [96] 0.640387707662813610 | 0.640387707662813610 [96] [97] -1.316740617501704236 | -1.316740617501704236 [97] [98] 0.710876490915716364 | 0.710876490915716364 [98] actual | expected [130] 0.999624448510854857 | 0.999624448510854857 [130] [131] 2.296930671665890600 | 2.296930671665890600 [131] [132] 0.523208704927782375 | 0.523208704927782375 [132] [133] 2.038985911263897499 - 2.038985911263897943 [133] [134] 1.169910987044686435 | 1.169910987044686435 [134] [135] -0.592758819452339103 - -0.592758819452339325 [135] [136] 0.865485135245702253 | 0.865485135245702253 [136] [137] -1.066447419394585427 | -1.066447419394585427 [137] [138] 0.908717246039729365 | 0.908717246039729365 [138] actual | expected [170] 1.113607788440279522 | 1.113607788440279522 [170] [171] 2.404756513506475457 | 2.404756513506475457 [171] [172] 0.639643387690265186 | 0.639643387690265186 [172] [173] 2.144897589301121510 - 2.144897589301121954 [173] [174] 1.277867254853730650 | 1.277867254853730650 [174] [175] -0.467109717059087437 - -0.467109717059087659 [175] [176] 0.980657281993739693 | 0.980657281993739693 [176] [177] -0.938383739360686864 | -0.938383739360686864 [177] [178] 1.009943389432660377 | 1.009943389432660377 [178] actual | expected [210] 1.245023279442536435 | 1.245023279442536435 [210] [211] 2.529072803562424809 | 2.529072803562424809 [211] [212] 0.773885119985510017 | 0.773885119985510017 [212] [213] 2.267006971082289990 - 2.267006971082290434 [213] [214] 1.402333917698326715 | 1.402333917698326715 [214] [215] -0.322244349056834301 - -0.322244349056834523 [215] [216] 1.113443391122045378 | 1.113443391122045378 [216] [217] -0.790734517977709883 | -0.790734517977709883 [217] [218] 1.126650649848819130 | 1.126650649848819130 [218] actual | expected [250] 1.404157142759920873 | 1.404157142759920873 [250] [251] 2.679610090749884321 | 2.679610090749884321 [251] [252] 0.936441340075221507 | 0.936441340075221507 [252] [253] 2.414871865258281680 - 2.414871865258282124 [253] [254] 1.553053294551263619 | 1.553053294551263619 [254] [255] -0.146823738478304960 - -0.146823738478305182 [255] [256] 1.274236965603368743 | 1.274236965603368743 [256] [257] -0.611942879067550294 | -0.611942879067550294 [257] [258] 1.267973998303168592 | 1.267973998303168592 [258] actual | expected [290] 1.518903854152400479 | 1.518903854152400479 [290] [291] 2.788158065936377383 | 2.788158065936377383 [291] [292] 1.053655811482130611 | 1.053655811482130611 [292] [293] 2.521492857065991355 - 2.521492857065991799 [293] [294] 1.661732569197573284 | 1.661732569197573284 [294] [295] -0.020333136448484695 - -0.020333136448484918 [295] [296] 1.390180445514837659 | 1.390180445514837659 [296] [297] -0.483021528440280457 | -0.483021528440280457 [297] [298] 1.369878075411931517 | 1.369878075411931517 [298] actual | expected [330] 1.616950688152825943 | 1.616950688152825943 [330] [331] 2.880908308405547569 | 2.880908308405547569 [331] [332] 1.153811255424849413 | 1.153811255424849413 [332] [333] 2.612596563288777318 - 2.612596563288777762 [333] [334] 1.754595002213947597 | 1.754595002213947597 [334] [335] 0.087748419086574048 - 0.087748419086573826 [335] [336] 1.489249874088077741 | 1.489249874088077741 [336] [337] -0.372862987854070849 | -0.372862987854070849 [337] [338] 1.456951351944231643 | 1.456951351944231643 [338] actual | expected [370] 1.708592705882265639 | 1.708592705882265639 [370] [371] 2.967599729412906839 | 2.967599729412906839 [371] [372] 1.247424140155617200 | 1.247424140155617200 [372] [373] 2.697749006465575583 - 2.697749006465576027 [373] [374] 1.841391285027613511 | 1.841391285027613511 [374] [375] 0.188769649700979342 - 0.188769649700979120 [375] [376] 1.581847686371490536 | 1.581847686371490536 [376] [377] -0.269900449263514863 | -0.269900449263514863 [377] [378] 1.538336649420525948 | 1.538336649420525948 [378] actual | expected [410] 1.800234723611705334 | 1.800234723611705334 [410] [411] 3.054291150420266110 | 3.054291150420266110 [411] [412] 1.341037024886384987 | 1.341037024886384987 [412] [413] 2.782901449642373848 - 2.782901449642374292 [413] [414] 1.928187567841279426 | 1.928187567841279426 [414] [415] 0.289790880315384636 - 0.289790880315384414 [415] [416] 1.674445498654903330 | 1.674445498654903330 [416] [417] -0.166937910672958878 | -0.166937910672958878 [417] [418] 1.619721946896820253 | 1.619721946896820253 [418] actual | expected [450] 1.898281557612131021 | 1.898281557612131021 [450] [451] 3.147041392889436295 | 3.147041392889436295 [451] [452] 1.441192468829103790 | 1.441192468829103790 [452] [453] 2.874005155865159811 - 2.874005155865160255 [453] [454] 2.021050000857653739 | 2.021050000857653739 [454] [455] 0.397872435850443518 - 0.397872435850443296 [455] [456] 1.773514927228143412 | 1.773514927228143412 [456] [457] -0.056779370086749104 | -0.056779370086749104 [457] [458] 1.706795223429120600 | 1.706795223429120600 [458] actual | expected [490] 2.013028269004610404 | 2.013028269004610404 [490] [491] 3.255589368075929357 | 3.255589368075929357 [491] [492] 1.558406940236013005 | 1.558406940236013005 [492] [493] 2.980626147672869486 - 2.980626147672869930 [493] [494] 2.129729275503963848 | 2.129729275503963848 [494] [495] 0.524363037880263727 - 0.524363037880263505 [495] [496] 1.889458407139612328 | 1.889458407139612328 [496] [497] 0.072141980540520623 | 0.072141980540520623 [497] [498] 1.808699300537883303 | 1.808699300537883303 [498] actual | expected [530] 2.172162132321994843 | 2.172162132321994843 [530] [531] 3.406126655263388869 | 3.406126655263388869 [531] [532] 1.720963160325724495 | 1.720963160325724495 [532] [533] 3.128491041848861176 - 3.128491041848861620 [533] [534] 2.280448652356900308 | 2.280448652356900308 [534] [535] 0.699783648458792928 - 0.699783648458792706 [535] [536] 2.050251981620935471 | 2.050251981620935471 [536] [537] 0.250933619450680157 | 0.250933619450680157 [537] [538] 1.950022648992232766 | 1.950022648992232766 [538] actual | expected [572] 1.855204892620968771 | 1.855204892620968771 [572] [573] 3.250600423630029212 | 3.250600423630029212 [573] [574] 2.404915315201495929 | 2.404915315201495929 [574] [575] 0.844649016461045621 - 0.844649016461045399 [575] [576] 2.183038090749240823 | 2.183038090749240823 [576] [577] 0.398582840833656582 | 0.398582840833656582 [577] [578] 2.066729909408390853 | 2.066729909408390853 [578] actual | expected [610] 2.417560963253676309 | 2.417560963253676309 [610] [611] 3.638268787159923079 | 3.638268787159923079 [611] [612] 1.971639575383451914 | 1.971639575383451914 [612] [613] 3.356512101667253667 - 3.356512101667254111 [613] [614] 2.512871583010540366 | 2.512871583010540366 [614] [615] 0.970298118854297620 - 0.970298118854297398 [615] [616] 2.298210237497278818 | 2.298210237497278818 [616] [617] 0.526646520867555701 | 0.526646520867555701 [617] [618] 2.167956052801322642 | 2.167956052801322642 [618] actual | expected [650] 2.640334935345645118 | 2.640334935345645118 [650] [651] 3.849008278526473426 | 3.849008278526473426 [651] [652] 2.199204557988164943 | 2.199204557988164943 [652] [653] 3.563510468462674385 - 3.563510468462674829 [653] [654] 2.723865984533921925 | 2.723865984533921925 [654] [655] 1.215872161931703888 - 1.215872161931703666 [655] [656] 2.523307665080167350 | 2.523307665080167350 [656] [657] 0.776939718974674509 | 0.776939718974674509 [657] [658] 2.365796807925335532 | 2.365796807925335532 [658] [ FAIL 1 | WARN 0 | SKIP 11 | PASS 369 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [31s/40s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-BLIS/spCF.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:57.30, 157.76 + 13.26