* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/proximetricsR.Rcheck’
* using R Under development (unstable) (2026-08-27 r90452)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-09-01 04:24:55 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘proximetricsR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘proximetricsR’ version ‘0.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘proximetricsR’ can be installed ... [39s/140s] OK
* used C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/66s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [26s/70s]
 [26s/70s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(proximetricsR)
  proximetricsR version 0.7.0 -- Matterhorn2
  An R package for modeling NIR data - BUCHI Labortechnik AG
  Check the package repository at: https://github.com/buchi-labortechnik-ag/proximetricsr
  > 
  > test_check("proximetricsR")
  Saving _problems/test-predict.spectral_model-151.R
  [ FAIL 1 | WARN 0 | SKIP 234 | PASS 1035 ]
  
  ══ Skipped tests (234) ═════════════════════════════════════════════════════════
  • On CRAN (234): 'test-calibrate.R:154:1', 'test-calibrate.R:173:1',
    'test-calibrate.R:196:1', 'test-calibrate.R:217:1', 'test-calibrate.R:224:1',
    'test-calibrate.R:300:1', 'test-calibrate.R:311:1',
    'test-calibrate_cv.R:25:1', 'test-calibrate_cv.R:35:1',
    'test-calibrate_cv.R:49:1', 'test-calibrate_cv.R:60:1',
    'test-calibrate_cv.R:71:1', 'test-calibrate_cv.R:82:1',
    'test-calibrate_cv.R:93:1', 'test-calibrate_cv.R:104:1',
    'test-calibrate_cv.R:115:1', 'test-calibrate_cv.R:126:1',
    'test-calibrate_cv.R:138:1', 'test-calibrate_cv.R:149:1',
    'test-calibrate_cv.R:160:1', 'test-calibrate_cv.R:171:1',
    'test-calibrate_models.R:35:3', 'test-calibrate_models.R:46:3',
    'test-calibrate_models.R:55:3', 'test-calibrate_models.R:64:3',
    'test-calibrate_models.R:73:3', 'test-calibrate_models.R:82:3',
    'test-calibrate_models.R:92:3', 'test-calibrate_models.R:101:3',
    'test-calibrate_models.R:112:3', 'test-calibrate_models.R:121:3',
    'test-calibrate_models.R:141:3', 'test-calibrate_models.R:156:3',
    'test-calibrate_models.R:166:3', 'test-calibrate_models.R:177:3',
    'test-calibrate_models.R:244:3', 'test-calibrate_models.R:263:3',
    'test-calibration_statistics.R:3:1', 'test-calibration_statistics.R:28:1',
    'test-estimate_model.R:28:1', 'test-estimate_model.R:37:1',
    'test-estimate_model.R:46:1', 'test-estimate_model.R:55:1',
    'test-estimate_model.R:64:1', 'test-estimate_model.R:73:1',
    'test-estimate_model.R:82:1', 'test-estimate_model.R:90:1',
    'test-fit_constructors.R:9:1', 'test-fit_constructors.R:22:1',
    'test-fit_constructors.R:35:1', 'test-fit_constructors.R:50:1',
    'test-fit_constructors.R:65:1', 'test-fit_constructors.R:80:1',
    'test-fit_constructors.R:85:1', 'test-plot.spectral_model.R:33:3',
    'test-predict.spectral_model.R:111:1', 'test-predict.spectral_model.R:124:1',
    'test-predict.spectral_model.R:133:1', 'test-predict.spectral_model.R:174:1',
    'test-predict.spectral_model.R:187:1', 'test-predict.spectral_model.R:196:1',
    'test-prep_derivatives.R:26:1', 'test-prep_derivatives.R:31:1',
    'test-prep_derivatives.R:35:1', 'test-prep_resample.R:18:1',
    'test-prep_smooth.R:30:1', 'test-prep_smooth.R:34:1', 'test-prep_snv.R:4:1',
    'test-prep_wav_trim.R:133:3', 'test-prep_wav_trim.R:144:3',
    'test-prep_wav_trim.R:156:3', 'test-prep_wav_trim.R:167:3',
    'test-prep_wav_trim.R:180:3', 'test-prep_wav_trim.R:190:3',
    'test-prep_wav_trim.R:207:3', 'test-prep_wav_trim.R:220:3',
    'test-prep_wav_trim.R:232:3', 'test-prep_wav_trim.R:245:3',
    'test-prep_wav_trim.R:257:3', 'test-prep_wav_trim.R:270:3',
    'test-prep_wav_trim.R:286:3', 'test-prep_wav_trim.R:301:3',
    'test-prep_wav_trim.R:312:3', 'test-prep_wav_trim.R:327:3',
    'test-prep_wav_trim.R:335:3', 'test-prep_wav_trim.R:347:3',
    'test-prep_wav_trim.R:366:3', 'test-prep_wav_trim.R:395:3',
    'test-prep_wav_trim.R:411:3', 'test-prep_wav_trim.R:422:3',
    'test-print.nax.R:13:3', 'test-print.nax.R:20:3', 'test-print.nax.R:27:3',
    'test-print.nax.R:37:3', 'test-print.nax.R:46:3', 'test-print.nax.R:55:3',
    'test-print.nax.R:64:3', 'test-print.nax.R:73:3', 'test-print.nax.R:83:3',
    'test-process.R:89:1', 'test-proximate_read_cal.R:6:3',
    'test-proximate_read_cal.R:14:3', 'test-proximate_read_cal.R:22:3',
    'test-proximate_read_cal.R:28:3', 'test-proximate_read_cal.R:38:3',
    'test-proximate_read_cal.R:46:3', 'test-proximate_read_cal.R:54:3',
    'test-proximate_read_cal.R:62:3', 'test-proximate_read_cal.R:69:3',
    'test-proximate_read_cal.R:77:3', 'test-proximate_read_cal.R:98:3',
    'test-proximate_read_cal.R:108:3', 'test-proximate_read_cal.R:122:3',
    'test-proximate_read_cal.R:136:3', 'test-proximate_read_nax.R:6:3',
    'test-proximate_read_nax.R:14:3', 'test-proximate_read_nax.R:23:3',
    'test-proximate_read_nax.R:29:3', 'test-proximate_read_nax.R:36:3',
    'test-proximate_read_nax.R:45:3', 'test-proximate_read_nax.R:51:3',
    'test-proximate_read_nax.R:58:3', 'test-proximate_read_nax.R:64:3',
    'test-proximate_read_nax.R:72:3', 'test-proximate_read_nax.R:78:3',
    'test-proximate_read_nax.R:87:3', 'test-proximate_read_nax.R:93:3',
    'test-proximate_read_nax.R:99:3', 'test-proximate_read_nax.R:123:3',
    'test-proximate_read_nax.R:129:3', 'test-proximate_recalibrate_nax.R:11:3',
    'test-proximate_recalibrate_nax.R:24:3', 'test-proxiscout_read_data.R:15:3',
    'test-proxiscout_read_data.R:24:3', 'test-proxiscout_read_data.R:34:3',
    'test-proxiscout_read_data.R:44:3', 'test-proxiscout_read_data.R:59:3',
    'test-proxiscout_read_data.R:70:3', 'test-proxiscout_write_model.R:33:3',
    'test-proxiscout_write_model.R:41:3', 'test-proxiscout_write_model.R:50:3',
    'test-proxiscout_write_model.R:60:3', 'test-proxiscout_write_model.R:72:3',
    'test-proxiscout_write_model.R:80:3', 'test-proxiscout_write_model.R:91:3',
    'test-proxiscout_write_model.R:102:3', 'test-proxiscout_write_model.R:122:3',
    'test-proxiscout_write_model.R:143:3', 'test-proxiscout_write_model.R:169:3',
    'test-proxiscout_write_model.R:185:3', 'test-proxiscout_write_model.R:194:3',
    'test-proxiscout_write_model.R:207:3', 'test-proxiscout_write_model.R:216:3',
    'test-proxiscout_write_model.R:225:3', 'test-proxiscout_write_model.R:236:3',
    'test-proxiscout_write_model.R:245:3', 'test-proxiscout_write_model.R:261:3',
    'test-proxiscout_write_model.R:268:3', 'test-proxiscout_write_model.R:283:3',
    'test-proxiscout_write_model.R:296:3', 'test-proxiscout_write_model.R:305:3',
    'test-proxiscout_write_model.R:311:3', 'test-proxiscout_write_model.R:320:3',
    'test-proxiscout_write_model.R:330:3', 'test-proxiscout_write_model.R:341:3',
    'test-proxiscout_write_model.R:351:3', 'test-proxiscout_write_model.R:361:3',
    'test-proxiscout_write_model.R:371:3', 'test-proxiscout_write_model.R:385:3',
    'test-proxiscout_write_model.R:419:3', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:777:5', 'test-proxiscout_write_model.R:777:5',
    'test-proxiscout_write_model.R:800:1', 'test-proxiscout_write_model.R:827:1',
    'test-proxiscout_write_model_info.R:33:3',
    'test-proxiscout_write_model_info.R:41:3',
    'test-proxiscout_write_model_info.R:50:3',
    'test-proxiscout_write_model_info.R:68:3',
    'test-proxiscout_write_model_info.R:76:3',
    'test-proxiscout_write_model_info.R:87:3',
    'test-proxiscout_write_model_info.R:98:3',
    'test-proxiscout_write_model_info.R:127:3',
    'test-proxiscout_write_model_info.R:136:3',
    'test-proxiscout_write_model_info.R:145:3',
    'test-proxiscout_write_model_info.R:155:3', 'test-sample_kfold.R:5:1',
    'test-sample_kfold.R:29:1', 'test-sample_kfold.R:41:1',
    'test-sample_kfold.R:58:1', 'test-sample_kfold.R:74:1',
    'test-sample_kfold.R:79:1', 'test-sample_loo.R:1:1',
    'test-sample_loo.R:18:1', 'test-sample_stratified.R:5:1',
    'test-sample_stratified.R:20:1', 'test-sample_stratified.R:38:1',
    'test-sample_stratified.R:54:1', 'test-sample_stratified.R:73:1',
    'test-sample_stratified.R:80:1', 'test-sample_stratified.R:87:1',
    'test-sample_stratified.R:94:1', 'test-validate_prediction.R:29:1',
    'test-validate_prediction.R:33:1', 'test-validate_prediction.R:43:1',
    'test-validate_prediction.R:50:1', 'test-write_cal.R:54:1',
    'test-write_cal.R:82:1', 'test-write_cal.R:136:3', 'test-write_cal.R:141:3',
    'test-write_cal.R:155:3', 'test-write_cal.R:160:3', 'test-write_cal.R:168:3',
    'test-write_cal.R:173:3', 'test-write_cal.R:178:3', 'test-write_cal.R:183:3',
    'test-write_nax.R:75:1', 'test-write_nax.R:122:1', 'test-write_nax.R:170:3',
    'test-write_nax.R:233:3', 'test-write_nax.R:263:3', 'test-write_prj.R:54:1',
    'test-write_prj.R:84:1', 'test-write_rtf.R:64:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-predict.spectral_model.R:147:3'): Predictions are the same for matrix/data.frame as newdata ──
  Expected `unname(predictions_mat_form$predictions)` to equal `unname(predictions_df_form$predictions[, 6, drop = FALSE])`.
  Differences:
  actual != expected but don't know how to show the difference
  
  
  [ FAIL 1 | WARN 0 | SKIP 234 | PASS 1035 ]
  Deleting unused snapshots: 'write_rtf/test_rtf1.THC.rtf'
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [74s/202s] OK
* checking PDF version of manual ... [7s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-BLIS/proximetricsR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 10:44.24, 204.93 + 17.30