* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/parameters.Rcheck’
* using R Under development (unstable) (2026-08-27 r90452)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-09-01 01:39:01 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘parameters/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘parameters’ version ‘0.29.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘parameters’ can be installed ... [21s/44s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [62s/128s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [37s/91s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [103s/250s]
 [104s/250s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(parameters)
  > library(testthat)
  > 
  > test_check("parameters")
  Your model may suffer from singularity (see `?lme4::isSingular` and
    `?performance::check_singularity`).
    Some of the confidence intervals of the random effects parameters are
    probably not meaningful!
    You may try to impose a prior on the random effects parameters, e.g.
    using the glmmTMB package.
  Your model may suffer from singularity (see `?lme4::isSingular` and
    `?performance::check_singularity`).
    Some of the confidence intervals of the random effects parameters are
    probably not meaningful!
    You may try to impose a prior on the random effects parameters, e.g.
    using the glmmTMB package.
  Contrasts set to contr.sum for the following variables: condition, talk
  Contrasts set to contr.sum for the following variables: condition, talk
  Contrasts set to contr.sum for the following variables: treatment, gender
  [1] "# Method Agreement Procedure:"                                                                                                                                                                                                                 
  [2] ""                                                                                                                                                                                                                                              
  [3] "The choice of 1 dimensions is supported by 11 (84.62%) methods out of 13 (Bartlett, Anderson, Lawley, Optimal coordinates, Acceleration factor, Parallel analysis, Kaiser criterion, Scree (SE), Scree (R2), VSS complexity 1, Velicer's MAP)."
  [1] "# Method Agreement Procedure:"                                                                               
  [2] ""                                                                                                            
  [3] "The choice of 1 dimensions is supported by 3 (60.00%) methods out of 5 (Velicer's MAP, BIC, BIC (adjusted))."
  Saving _problems/test-standardize_parameters-129.R
  Saving _problems/test-standardize_parameters-134.R
  [ FAIL 2 | WARN 97 | SKIP 129 | PASS 713 ]
  
  ══ Skipped tests (129) ═════════════════════════════════════════════════════════
  • On CRAN (120): 'test-GLMMadaptive.R:1:1', 'test-Hmisc.R:1:1',
    'test-averaging.R:1:1', 'test-backticks.R:1:1',
    'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1',
    'test-brms.R:1:1', 'test-compare_parameters.R:90:5',
    'test-compare_parameters.R:95:5', 'test-complete_separation.R:4:1',
    'test-complete_separation.R:18:1', 'test-complete_separation.R:28:1',
    'test-coxph.R:1:1', 'test-discovr_book.R:2:1', 'test-efa.R:1:1',
    'test-emmGrid-df_colname.R:1:1', 'test-equivalence_test.R:3:1',
    'test-equivalence_test.R:13:1', 'test-equivalence_test.R:22:3',
    'test-equivalence_test.R:108:3', 'test-factor_analysis.R:2:3',
    'test-factor_analysis.R:136:3', 'test-format_model_parameters2.R:2:3',
    'test-gam.R:30:1', 'test-get_scores.R:1:1', 'test-glmer.R:1:1',
    'test-glmmTMB-2.R:1:1', 'test-glmmTMB-profile_CI.R:2:3',
    'test-glmmTMB.R:1:1', 'test-group_level_total.R:2:1', 'test-helper.R:1:1',
    'test-include_reference.R:4:1', 'test-include_reference.R:62:1',
    'test-include_reference.R:110:1', 'test-ivreg.R:45:1', 'test-lavaan.R:66:3',
    'test-lavaan.mi.R:1:1', 'test-lcmm.R:1:1', 'test-lmerTest.R:1:1',
    'test-marginaleffects.R:213:1', 'test-marginaleffects.R:242:3',
    'test-marginaleffects.R:386:3', 'test-mipo.R:5:1', 'test-mipo.R:23:1',
    'test-mmrm.R:1:1', 'test-model_parameters.anova.R:1:1',
    'test-model_parameters.aov.R:1:1', 'test-model_parameters.aov_es_ci.R:183:3',
    'test-model_parameters.aov_es_ci.R:294:3',
    'test-model_parameters.aov_es_ci.R:344:3',
    'test-model_parameters.aov_es_ci.R:397:3',
    'test-model_parameters.bracl.R:1:1', 'test-model_parameters.cgam.R:1:1',
    'test-model_parameters.coxme.R:1:1', 'test-model_parameters.efa_cfa.R:30:3',
    'test-model_parameters.epi2x2.R:1:1', 'test-model_parameters.fixest.R:2:3',
    'test-model_parameters.fixest.R:77:3',
    'test-model_parameters.fixest.R:146:1',
    'test-model_parameters.fixest_multi.R:1:1',
    'test-model_parameters.glm.R:35:1', 'test-model_parameters.glm.R:67:1',
    'test-model_parameters.glmgee.R:1:1', 'test-model_parameters.htest.R:274:3',
    'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',
    'test-model_parameters.mclogit.R:1:1', 'test-model_parameters.mediate.R:1:1',
    'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',
    'test-model_parameters.vgam.R:3:1', 'test-model_parameters_df.R:1:1',
    'test-model_parameters_ordinal.R:1:1',
    'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
    'test-model_parameters_std_mixed.R:1:1', 'test-n_factors.R:10:3',
    'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
    'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',
    'test-panelr.R:1:1', 'test-parameters-labels.R:1:1', 'test-pca.R:64:1',
    'test-pipe.R:1:1', 'test-plm.R:97:1', 'test-polr.R:1:1',
    'test-pool_parameters.R:1:1', 'test-pool_parameters.R:32:1',
    'test-posterior.R:1:1', 'test-pretty_names.R:40:1',
    'test-pretty_names.R:73:5', 'test-print_AER_labels.R:5:1',
    'test-printing-stan.R:1:1', 'test-printing.R:1:1', 'test-printing2.R:1:1',
    'test-quantreg.R:1:1', 'test-random_effects_ci-glmmTMB.R:3:1',
    'test-random_effects_ci.R:1:1', 'test-random_effects_covstruct.R:1:1',
    'test-robust.R:1:1', 'test-rstanarm.R:2:1', 'test-sampleSelection.R:2:1',
    'test-serp.R:1:1', 'test-standardize_parameters.R:33:1',
    'test-standardize_parameters.R:41:3', 'test-standardize_parameters.R:66:3',
    'test-standardize_parameters.R:157:3', 'test-standardize_parameters.R:271:3',
    'test-standardize_parameters.R:340:3', 'test-standardize_parameters.R:436:3',
    'test-standardize_parameters.R:532:3', 'test-svylme.R:1:1',
    'test-svyolr.R:1:1', 'test-visualisation_recipe.R:1:1',
    'test-weightit.R:6:1', 'test-weightit.R:26:1', 'test-wrs2.R:55:1'
  • On Linux (4): 'test-model_parameters.BFBayesFactor.R:1:1',
    'test-nestedLogit.R:78:3', 'test-simulate_model.R:1:1',
    'test-simulate_parameters.R:1:1'
  • TODO: check this test locally, fails on CI, probably due to scoping issues?
    (1): 'test-marginaleffects.R:346:3'
  • TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
  • TODO: this one actually is not correct. (1):
    'test-model_parameters_robust.R:127:3'
  • empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-standardize_parameters.R:125:3'): standardize_parameters (lm with ci) ──
  Expected `standardize_parameters(m0, method = "refit")[[2]][-1]` to equal `standardize_parameters(m0, method = "smart")[[2]][-1]`.
  Differences:
    `actual`: -0.741 0.426
  `expected`: -0.741 0.416
  
  ── Failure ('test-standardize_parameters.R:130:3'): standardize_parameters (lm with ci) ──
  Expected `standardize_parameters(m0, method = "refit", two_sd = TRUE)[[2]][-1]` to equal `standardize_parameters(m0, method = "smart", two_sd = TRUE)[[2]][-1]`.
  Differences:
    `actual`: -1.482 0.426
  `expected`: -1.482 0.416
  
  
  [ FAIL 2 | WARN 97 | SKIP 129 | PASS 713 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s/15s] OK
* checking PDF version of manual ... [10s/23s] OK
* checking HTML version of manual ... [7s/14s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-BLIS/parameters.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:31.54, 288.70 + 15.19