* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/geosmooth.Rcheck’ * using R Under development (unstable) (2026-11-10 r90873) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) GNU Fortran (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-11-10 18:57:21 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘geosmooth/DESCRIPTION’ ... OK * this is package ‘geosmooth’ version ‘0.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘geosmooth’ can be installed ... [301s/458s] OK * used C++ compiler: ‘g++ (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3)’ * checking C++ specification ... INFO specified C++17 * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [62s/154s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [11s/22s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [211s/265s] [211s/266s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(geosmooth) > > validation.contexts <- gsub( + "^test-|\\.R$", "", + c( + "test-lps-bandwidth-multiplier.R", + "test-lps-binary-metric-consistency.R", + "test-lps-binary-separation.R", + "test-lps-binomial-na-consistency.R", + "test-lps-nested-grouped-cv.R", + "test-lps-ridge-alignment.R", + "test-lps-tier0-correctness.R", + "test-lps-tier0-correctness-extended.R", + "test-lps-tier4-uncertainty.R", + "test-odcv5-all-method-smoke-report.R" + ) + ) > > # These acceptance and scientific-validation studies remain available via > # `make test-validation` and `make test-all`, but are too CPU-intensive for > # package checks on shared local and external check farms. > test_check( + "geosmooth", + filter = paste(validation.contexts, collapse = "|"), + invert = TRUE + ) Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Order-2 Gaussian trend-filtering assessment Null: a common outcome distribution; independent, exchangeable observations Global test: complete Residual sum-of-squares reduction: 17.37527 Permutation p-value: 0.1 Permutations: 9 of 9 completed Observed curve summaries (response units): absolute.deviation total.variation 0.6109703 3.5644544 Requested tests (Holm adjustment across these statistics only): test statistic status p.value p.value.holm squared.error 17.3752695 complete 0.1 0.3 absolute.deviation 0.6109703 complete 0.1 0.3 total.variation 3.5644544 complete 0.1 0.3 Nested-CV prediction: complete model mse mae Constant mean 0.51223259 0.6322411 Trend filtering 0.01658485 0.1083897 Improvement (constant minus smoother): mse mae 0.4956477 0.5238514 Order-2 Gaussian trend filtering (native C++; dense) 11 observations; 11 distinct locations lambda converged status stationarity complementarity Inf TRUE converged 1.665335e-16 0 0 TRUE converged 2.478563e-15 0 Order-2 Gaussian trend filtering (native C++; banded) 11 observations; 11 distinct locations lambda converged status stationarity complementarity Inf TRUE converged 7.802491e-17 0 0 TRUE converged 2.346312e-19 0 Order-2 logistic trend-filtering assessment Null: constant binary probability; independent, exchangeable observations Global test: complete Likelihood improvement statistic: 0.1334679 Permutation p-value: 0.9 Permutations: 9 of 9 completed Observed probability-curve summaries: absolute.deviation total.variation 0.01987246 0.07807162 Nested-CV prediction: complete model log.loss brier Constant probability 0.6773568 0.2420833 Trend filtering 0.6809136 0.2437237 Improvement (constant minus smoother): log.loss brier -0.003556776 -0.001640347 Saving _problems/test-logistic-trend-filtering-117.R Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Tracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" Untracing function "rcpp_ps_lps_local_pca_supports" in package "namespace:geosmooth" [ FAIL 1 | WARN 0 | SKIP 6 | PASS 8689 ] ══ Skipped tests (6) ═══════════════════════════════════════════════════════════ • No source tree in installed checks. (1): 'test-neighbor-documentation.R:3:5' • package source tree is unavailable in installed-package tests (4): 'test-exported-examples.R:3:5', 'test-ge0-skeleton.R:3:5', 'test-geosmooth-native-naming.R:3:5', 'test-synthetic-guardrails.R:13:3' • source-tree test runner is not included in the package tarball (1): 'test-test-runner-contract.R:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-logistic-trend-filtering.R:116:5'): invalid inputs and excessive dense workspace are rejected ── Expected `fit.logistic.trend.filtering(...)` to throw a error. [ FAIL 1 | WARN 0 | SKIP 6 | PASS 8689 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [51s/51s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-BLIS/geosmooth.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 17:39.29, 656.89 + 27.80