* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/campsismod.Rcheck’
* using R Under development (unstable) (2026-08-27 r90452)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-08-31 15:39:36 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘campsismod/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘campsismod’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘campsismod’ can be installed ... [13s/14s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [72s/75s]
 [72s/75s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > library(campsismod)
  
  Attaching package: 'campsismod'
  
  The following object is masked from 'package:utils':
  
      find
  
  The following objects are masked from 'package:base':
  
      Position, as.data.frame, replace, replicate, sort, toString, write
  
  > test_check("campsismod")
  Success rate when sampling parameters from variance-covariance matrix: 35.2% 
  Success rate when sampling parameters from variance-covariance matrix: 0.1% 
  [MAIN]
  TVMETAB_CL=THETA_METAB_CL
  if (METAB==0) TVMETAB_CL=0
  MU_DUR=THETA_DUR
  MU_VC=THETA_VC
  TVVP=THETA_VP
  TVQ=THETA_Q
  MU_CL=THETA_CL + TVMETAB_CL
  TVPROP_RUV=THETA_PROP_RUV
  
  METAB_CL=exp(TVMETAB_CL)
  DUR=exp(MU_DUR + ETA_DUR)
  VC=exp(MU_VC + ETA_VC)*pow(WT/70,1)
  VP=exp(TVVP)*pow(WT/70,1)
  Q=exp(TVQ)*pow(WT/70,0.75)
  CL=exp(MU_CL + ETA_CL)*pow(WT/70,0.75)
  PROP_RUV=exp(TVPROP_RUV)
  
  [ODE]
  d/dt(A_CENTRAL)=Q/VP*A_PERIPHERAL - Q/VC*A_CENTRAL - CL/VC*A_CENTRAL
  d/dt(A_PERIPHERAL)=Q/VC*A_CENTRAL - Q/VP*A_PERIPHERAL
  
  [DURATION]
  A_CENTRAL=DUR
  
  [ERROR]
  CONC=A_CENTRAL/VC
  if (CONC <= 0.001) CONC=0.001
  IPRED=log(CONC)
  W=PROP_RUV
  Y=IPRED + W*EPS_RUV_FIX
  
  
  THETA's:
        name index     value   fix         se       rse%
  1 METAB_CL     1  0.318947 FALSE 0.05438998 17.0529839
  2      DUR     2  0.410151 FALSE 0.02184601  5.3263326
  3       VC     3  4.422430 FALSE 0.03187821  0.7208301
  4       VP     4  5.278690 FALSE 0.03158368  0.5983243
  5        Q     5  1.417360 FALSE 0.02033219  1.4345114
  6       CL     6  1.614790 FALSE 0.03582011  2.2182517
  7 PROP_RUV     7 -1.931370 FALSE 0.01862662  0.9644253
  OMEGA's:
     name index index2     value   fix type          se     rse%
  1   DUR     1      1 0.0135632 FALSE  var 0.004452572 32.82833
  2    VC     2      2 0.0506109 FALSE  var 0.009368292 18.51042
  3    CL     3      3 0.0432495 FALSE  var 0.008303180 19.19833
  4 VC_CL     2      3 0.8000000 FALSE  cor          NA       NA
  SIGMA's:
       name index index2 value   fix type
  1 RUV_FIX     1      1     1 FALSE  var
  Variance-covariance matrix available (see ?get_var_cov)
  
  Compartments:
  A_CENTRAL (CMT=1)
  A_PERIPHERAL (CMT=2)
  Success rate when sampling parameters from variance-covariance matrix: 100.0% 
  Success rate when sampling BLOCK(1) - OMEGA_DUR from scaled inverse chi-squared distribution: 100.0% 
  Success rate when sampling BLOCK(2) - OMEGA_VC / OMEGA_CL from scaled inverse Wishart distribution: 100.0% 
  Success rate when sampling BLOCK(1) - SIGMA_RUV_FIX from scaled inverse chi-squared distribution: 100.0% 
  Success rate when sampling parameters from variance-covariance matrix: 100.0% 
  Success rate when sampling BLOCK(1) - OMEGA_DUR from scaled inverse chi-squared distribution: 100.0% 
  Success rate when sampling BLOCK(2) - OMEGA_VC / OMEGA_CL from scaled inverse Wishart distribution: 100.0% 
  Success rate when sampling BLOCK(1) - SIGMA_RUV_FIX from scaled inverse chi-squared distribution: 100.0% 
  Invalidating 165 row(s) that did not succeed the 'min-max' check
  Sampling 198 extra row(s)
  Invalidating 27 row(s) that did not succeed the 'min-max' check
  Success rate when sampling parameters from variance-covariance matrix: 83.9% 
  Success rate when sampling parameters from variance-covariance matrix: 100.0% 
  Success rate when sampling parameters from variance-covariance matrix: 100.0% 
  Success rate when sampling parameters from variance-covariance matrix: 100.0% 
  Saving _problems/test-replicated_campsis_model-424.R
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 450 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1):
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-replicated_campsis_model.R:424:3'): Checking for positive definiteness works as expected ──
  Expected `is_matrix_positive_definite(rxode_matrix(model9, type = "omega"))` to be FALSE.
  Differences:
  `actual`:   TRUE 
  `expected`: FALSE
  
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 450 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [26s/29s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-BLIS/campsismod.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:03.09, 161.16 + 10.35