* using log directory ‘/data/localhost/ripley/R/packages/tests-BLIS/INLAvaan.Rcheck’
* using R Under development (unstable) (2026-10-26 r90766)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
    GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-10-27 06:58:04 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘INLAvaan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INLAvaan’ version ‘0.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INLAvaan’ can be installed ... [14s/41s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [36s/95s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/46s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [258s/407s]
 [258s/408s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(INLAvaan)
  
  Attaching package: 'INLAvaan'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  > 
  > test_check("INLAvaan")
  Saving _problems/test-multilevel-211.R
  [ FAIL 1 | WARN 0 | SKIP 130 | PASS 1432 ]
  
  ══ Skipped tests (130) ═════════════════════════════════════════════════════════
  • On CRAN (128): 'test-cfa.R:28:3', 'test-cfa.R:88:3', 'test-compare.R:91:3',
    'test-compare.R:110:3', 'test-compare.R:154:3', 'test-compare.R:245:3',
    'test-compare.R:259:3', 'test-compare.R:468:3', 'test-compare.R:488:3',
    'test-compare.R:513:3', 'test-compare.R:524:3', 'test-compare.R:582:3',
    'test-compare.R:670:3', 'test-composites.R:72:3', 'test-composites.R:111:3',
    'test-composites.R:158:3', 'test-composites.R:237:3',
    'test-composites.R:296:3', 'test-composites.R:334:3',
    'test-composites.R:371:3', 'test-constraints.R:18:3',
    'test-constraints.R:42:3', 'test-constraints.R:86:3',
    'test-constraints.R:102:3', 'test-constraints.R:118:3',
    'test-constraints.R:133:3', 'test-equality_constraints.R:69:3',
    'test-equality_constraints.R:121:3', 'test-equality_constraints.R:141:3',
    'test-equality_constraints.R:166:3', 'test-equality_constraints.R:183:3',
    'test-fast_jacobian.R:97:3', 'test-fitmeasures.R:257:3',
    'test-fitmeasures.R:319:3', 'test-growth.R:54:3', 'test-growth.R:95:3',
    'test-loglik.R:173:3', 'test-loglik.R:257:3', 'test-loo-composites.R:3:1',
    'test-loo-fixedx.R:3:1', 'test-loo-loco.R:3:1', 'test-loo-missing-2l.R:3:1',
    'test-loo-missing.R:3:1', 'test-loo-multigroup.R:3:1', 'test-loo-rs.R:76:3',
    'test-loo-rs.R:233:3', 'test-loo-rs.R:303:3', 'test-loo-rs.R:337:3',
    'test-mediation.R:37:3', 'test-mediation.R:42:3', 'test-mediation.R:94:3',
    'test-mediation.R:123:3', 'test-mediation.R:179:3',
    'test-method-update.R:33:3', 'test-method-update.R:45:3',
    'test-method-update.R:54:3', 'test-method-update.R:89:3',
    'test-multigroup.R:26:3', 'test-multigroup.R:70:3', 'test-multilevel.R:29:3',
    'test-multilevel.R:121:3', 'test-multilevel.R:316:3',
    'test-multilevel.R:372:3', 'test-multilevel.R:409:3',
    'test-multilevel.R:433:3', 'test-multilevel.R:539:3',
    'test-multilevel.R:590:3', 'test-multilevel.R:613:3',
    'test-multilevel.R:648:3', 'test-multilevel.R:713:3',
    'test-multilevel.R:749:3', 'test-multilevel.R:815:3',
    'test-multilevel.R:859:3', 'test-multilevel.R:904:3',
    'test-optim_method.R:22:3', 'test-optim_method.R:39:3',
    'test-optim_method.R:56:3', 'test-ordered-factors.R:2:1',
    'test-partable.R:384:3', 'test-ppp.R:31:3', 'test-ppp.R:118:3',
    'test-ppp.R:174:3', 'test-ppp.R:209:3', 'test-ppp.R:251:3',
    'test-predict.R:104:3', 'test-predict.R:370:3', 'test-predict.R:404:3',
    'test-predict.R:431:3', 'test-random-slopes.R:98:3',
    'test-random-slopes.R:135:3', 'test-random-slopes.R:176:3',
    'test-random-slopes.R:258:3', 'test-random-slopes.R:313:3',
    'test-random-slopes.R:346:3', 'test-random-slopes.R:374:3',
    'test-random-slopes.R:394:3', 'test-random-slopes.R:484:3',
    'test-random-slopes.R:506:3', 'test-random-slopes.R:531:3',
    'test-random-slopes.R:572:3', 'test-rs-generator.R:8:3',
    'test-rs-generator.R:34:3', 'test-rs-generator.R:97:3',
    'test-rs-generator.R:216:3', 'test-rs-generator.R:276:3',
    'test-rs-generator.R:302:3', 'test-rs-moments.R:80:3',
    'test-rs-moments.R:155:3', 'test-rs-moments.R:171:3',
    'test-rs-moments.R:240:3', 'test-rs-moments.R:388:3',
    'test-rs-moments.R:411:3', 'test-rs-moments.R:522:3',
    'test-rs-moments.R:547:3', 'test-rs-moments.R:562:3',
    'test-rs-moments.R:645:3', 'test-rs-moments.R:708:3',
    'test-sampling.R:176:3', 'test-sampling.R:253:3', 'test-sem.R:47:3',
    'test-sem.R:104:3', 'test-sem.R:154:3', 'test-simulate.R:146:3',
    'test-simulate.R:165:3', 'test-simulate.R:181:3',
    'test-vb-correction.R:85:3', 'test-vb-correction.R:137:3', 'test-vcov.R:23:3'
  • Skipping (2): 'test-binary.R:1:1', 'test-documentation.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-multilevel.R:211:3'): Multilevel ypred works with residual variances fixed to zero ──
  Expected `ypred[, "y1"]` to equal `yhat[, "y1"]`.
  Differences:
       actual       | expected                     
   [1] 0.229321617  - 0.229321634  [1]             
   [2] 0.308580078  - 0.308580095  [2]             
   [3] 0.200493443  - 0.200493460  [3]             
   [4] 1.044798217  - 1.044798234  [4]             
   [5] 0.688179191  - 0.688179208  [5]             
   [6] -2.068764455 - -2.068764447 [6]             
   [7] -0.787395818 - -0.787395810 [7]             
   [8] 3.454413382  - 3.454413390  [8]             
   [9] 0.599135955  - 0.599135963  [9]             
  [10] 1.518020343  - 1.518020351  [10]            
   ... ...            ...          and 490 more ...
  
  
  [ FAIL 1 | WARN 0 | SKIP 130 | PASS 1432 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [32s/33s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-BLIS/INLAvaan.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 11:42.62, 390.81 + 12.19