* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/surf.Rcheck’ * using R Under development (unstable) (2023-01-01 r83536) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) GNU Fortran (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4) * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘surf/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘surf’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘surf’ can be installed ... [17s/20s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [29s/38s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [83s/104s] [84s/105s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # load library > library(testthat) > > # run tests > test_check("surf") Loading required package: surf Loading required package: Matrix [ FAIL 5 | WARN 4 | SKIP 0 | PASS 486 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-zero_counts_ModelB.R:176'): compare influence functions estimates ── attr(flow_srs_lin$eta, "influence") not identical to attr(flow_srs_rep$eta, "influence"). Objects equal but not identical ── Failure ('test-zero_counts_ModelB.R:177'): compare influence functions estimates ── attr(flow_srs_lin$pij, "influence") not identical to attr(flow_srs_rep$pij, "influence"). Objects equal but not identical ── Failure ('test-zero_counts_ModelB.R:178'): compare influence functions estimates ── attr(flow_srs_lin$psi, "influence") not identical to attr(flow_srs_rep$psi, "influence"). Objects equal but not identical ── Failure ('test-zero_counts_ModelB.R:179'): compare influence functions estimates ── attr(flow_srs_lin$rho, "influence") not identical to attr(flow_srs_rep$rho, "influence"). Objects equal but not identical ── Failure ('test-zero_counts_ModelB.R:180'): compare influence functions estimates ── attr(flow_srs_lin$tau, "influence") not identical to attr(flow_srs_rep$tau, "influence"). Objects equal but not identical [ FAIL 5 | WARN 4 | SKIP 0 | PASS 486 ] Error: Test failures Execution halted * checking PDF version of manual ... [6s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-ATLAS/surf.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:24.28, 194.49 + 13.15