* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/sme.Rcheck’ * using R Under development (unstable) (2020-01-09 r77648) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘sme/DESCRIPTION’ ... OK * this is package ‘sme’ version ‘1.0.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sme’ can be installed ... [7s/20s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/12s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/17s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘sme.R’ [134s/196s] Comparing ‘sme.Rout’ to ‘sme.Rout.save’ ...3a4,5 > Warning message: > package 'lattice' was built under R version 2.15.3 8c10 < 15.180176 179.667323 17.778923 6.617242 6.932365 183.671154 179.438654 --- > 15.180176 176.122085 17.778923 6.617242 6.932365 185.501040 181.405027 10c12 < 15.376392 180.441984 168.813362 --- > 15.376392 184.649362 175.169305 15c17 < 15.180176 179.667323 17.778923 6.617242 6.932365 184.780910 178.668139 --- > 15.180176 176.122085 17.778923 6.617242 6.932365 185.501040 181.405027 17c19 < 15.376392 183.659328 175.921512 --- > 15.376392 184.649362 175.169305 [134s/197s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [253s/283s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK Time 9:49.90, 431.29 + 8.47