* using log directory ‘/data/localhost/ripley/R/packages/tests-ATLAS/huge.Rcheck’
* using R Under development (unstable) (2026-07-25 r90301)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
    GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
* running under: Fedora Linux 44 (Server Edition)
* using session charset: UTF-8
* current time: 2026-07-26 17:11:41 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘huge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘huge’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘huge’ can be installed ... [31s/36s] OK
* used C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test.R’
  Running ‘testthat.R’ [19s/21s]
 [23s/25s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(huge)
  > 
  > test_check("huge")
  Saving _problems/test-select-83.R
  Saving _problems/test-select-83.R
  Saving _problems/test-select-69.R
  Saving _problems/test-select-101.R
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 2899 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-select.R:83:5'): RIC handles a zero lower endpoint without weakening solvers ──
  Expected `selected$opt.lambda` to be identical to 0.
  Differences:
  Objects equal but not identical
  ── Failure ('test-select.R:83:5'): RIC handles a zero lower endpoint without weakening solvers ──
  Expected `selected$opt.lambda` to be identical to 0.
  Differences:
  Objects equal but not identical
  ── Error ('test-select.R:63:7'): RIC handles a zero lower endpoint without weakening solvers ──
  <std::runtime_error/C++Error/error/condition>
  Error: glasso produced non-finite estimates.
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test-select.R:63:7
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─huge::huge.select(...)
   7.   └─huge (local) refit.fn(est$data, refit.lambda, cov.output = !is.null(est[["cov"]]))
   8.     └─huge::huge.glasso(...)
  ── Failure ('test-select.R:101:3'): RIC zero does not erase a representable weak correlation ──
  Expected `selected$opt.lambda` to be identical to 0.
  Differences:
  Objects equal but not identical
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 2899 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [8s/10s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/localhost/ripley/R/packages/tests-ATLAS/huge.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:23.30, 107.70 + 10.11