* using log directory ‘/data/localhost/ripley/R/packages/tests-ATLAS/dataganger.Rcheck’ * using R Under development (unstable) (2026-07-21 r90286) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-07-22 02:23:16 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘dataganger/DESCRIPTION’ ... OK * this is package ‘dataganger’ version ‘0.6.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dataganger’ can be installed ... [8s/18s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s/41s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [80s/169s] [80s/169s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dataganger) dataganger 0.6.1 Start the app: dataganger::run_app() > > test_check("dataganger") Loading required package: shiny i `remove_ids` is TRUE: masking 1 ID column "id" i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. v Wrote synthetic bundle: /tmp/RtmpWa9Qc1/working_dir/RtmpJeIWbS/filecb4cb5e34e1/synthetic_bundle.zip i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Code Readiness --------------------------------------------------- 6 pass, 0 warn, 0 fail v Ready: no blocking issues found i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. -- DataGangeR Comparison ------------------------------------------------------- -- Dataset -- * Rows: 5 (original) -> 5 (synthetic) * Columns: 2 (original) -> 2 (synthetic) * Type match: 50% * Missing: 0% (original) -> 0% (synthetic) -- Numeric -- top 3 by |standardized difference| -- * x: std diff = 0.632 Orig mean (SD): 3 (1.58) -- Categorical -- top 3 by distributional difference -- * y: p = 0.00794, TVD = 1 Levels: 5 (orig) -> 1 (syn) i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:35] synthesize_synthpop: building synthpop args [03:25:35] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:25:35] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:35] synthesize_synthpop: building synthpop args [03:25:35] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=40 Variable(s): group have been changed for synthesis from character to factor. [03:25:35] synthesize_synthpop: synthpop done [03:25:35] synthesize_synthpop: building synthpop args [03:25:35] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=40 Variable(s): group have been changed for synthesis from character to factor. [03:25:35] synthesize_synthpop: synthpop done Variables changed from character to factor x 1 in syn and 1 in orig age changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable Variables changed from character to factor x 1 in syn and 1 in orig age changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:36] synthesize_synthpop: building synthpop args [03:25:36] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=60 [03:25:36] synthesize_synthpop: synthpop done -- DataGangeR Roles ------------------------------------------------------------ 1 column analysed; 0 user overrides active -- x (numeric) -> categorical candidate * Reason: Only a few distinct values appear, so this looks like a coded category rather than a measurement. # A tibble: 2 x 2 variable identifies 1 age "none" 2 city "" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:41] synthesize_synthpop: building synthpop args [03:25:41] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=40 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:25:41] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:43] synthesize_synthpop: building synthpop args [03:25:43] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=8 [03:25:43] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Synthetic and original data checked with synorig.compare, looks like no adjustment needed i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:43] synthesize_synthpop: building synthpop args [03:25:43] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=40 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:25:43] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:48] synthesize_synthpop: building synthpop args [03:25:48] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=30 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:25:49] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:53] synthesize_synthpop: building synthpop args [03:25:53] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=12 [03:25:53] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. score changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:56] synthesize_synthpop: building synthpop args [03:25:56] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:25:56] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:57] synthesize_synthpop: building synthpop args [03:25:57] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10 Variable(s): name, group have been changed for synthesis from character to factor. [03:25:57] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 2 in syn and 2 in orig Factor levels don't match for name levels combined syn levels a b d e h i j orig levels a b c d e f g h i j ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i `remove_ids` is TRUE: masking 1 ID column "id" i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:25:59] synthesize_synthpop: building synthpop args [03:25:59] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10 Variable(s): name, group have been changed for synthesis from character to factor. [03:25:59] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 2 in syn and 2 in orig Factor levels don't match for name levels combined syn levels a b c d e g i orig levels a b c d e f g h i j ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:01] synthesize_synthpop: building synthpop args [03:26:01] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10 Variable(s): name, group have been changed for synthesis from character to factor. [03:26:01] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 2 in syn and 2 in orig Factor levels don't match for name levels combined syn levels a b c e f h i orig levels a b c d e f g h i j ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:02] synthesize_synthpop: building synthpop args [03:26:02] synthesize_synthpop: calling synthpop::syn() on 5 column(s), k=10 Variable(s): name, group have been changed for synthesis from character to factor. [03:26:02] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 2 in syn and 2 in orig Factor levels don't match for name levels combined syn levels a b c d e g i orig levels a b c d e f g h i j ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:02] synthesize_synthpop: building synthpop args [03:26:02] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:02] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:04] synthesize_synthpop: building synthpop args [03:26:04] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:04] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:05] synthesize_synthpop: building synthpop args [03:26:05] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:05] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:06] synthesize_synthpop: building synthpop args [03:26:06] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:06] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:08] synthesize_synthpop: building synthpop args [03:26:08] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:08] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:09] synthesize_synthpop: building synthpop args [03:26:09] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:09] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:10] synthesize_synthpop: building synthpop args [03:26:10] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:10] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:10] synthesize_synthpop: building synthpop args [03:26:10] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:10] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:12] synthesize_synthpop: building synthpop args [03:26:12] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:12] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Not enough numeric columns (0) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:14] synthesize_synthpop: building synthpop args [03:26:14] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:14] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:15] synthesize_synthpop: building synthpop args [03:26:15] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): grp have been changed for synthesis from character to factor. [03:26:15] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Variables changed from character to factor x 1 in syn and 1 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:18] synthesize_synthpop: building synthpop args [03:26:18] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:26:18] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:37] synthesize_synthpop: building synthpop args [03:26:37] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=25 Variable(s): grp have been changed for synthesis from character to factor. [03:26:37] synthesize_synthpop: synthpop done i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:41] generate: starting on 200 row(s) x 10 column(s), engine=auto [03:26:41] generate: pipeline ... [03:26:41] synthesize_synthpop: building synthpop args [03:26:41] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:26:41] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable [03:26:42] generate: pipeline done: 1.41s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:43] generate: starting on 200 row(s) x 10 column(s), engine=auto [03:26:43] generate: pipeline ... [03:26:43] synthesize_synthpop: building synthpop args [03:26:43] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:26:44] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable [03:26:45] generate: pipeline done: 1.65s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:46] generate: starting on 200 row(s) x 10 column(s), engine=auto [03:26:46] generate: pipeline ... i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:46] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:46] generate: pipeline ... [03:26:46] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:47] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:47] generate: pipeline ... [03:26:47] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:48] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:48] generate: pipeline ... [03:26:48] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:49] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:49] generate: pipeline ... [03:26:49] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:49] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:49] generate: pipeline ... [03:26:49] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:50] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:50] generate: pipeline ... [03:26:50] generate: pipeline done: 0.00s [03:26:50] generate: starting on 3 row(s) x 1 column(s), engine=auto [03:26:50] generate: pipeline ... [03:26:50] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:52] generate: starting on 10 row(s) x 2 column(s), engine=auto [03:26:52] generate: pipeline ... [03:26:52] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:53] generate: starting on 3 row(s) x 4 column(s), engine=auto [03:26:53] generate: pipeline ... [03:26:53] generate: pipeline done: 0.00s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:54] generate: starting on 3 row(s) x 4 column(s), engine=auto [03:26:54] generate: pipeline ... [03:26:54] generate: pipeline done: 0.00s [03:26:54] generate: starting on 3 row(s) x 4 column(s), engine=auto [03:26:54] generate: pipeline ... [03:26:54] generate: pipeline done: 0.03s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:26:55] generate: starting on 3 row(s) x 4 column(s), engine=auto [03:26:55] generate: pipeline ... [03:26:55] generate: pipeline done: 0.00s [03:26:56] generate: starting on 3 row(s) x 4 column(s), engine=auto [03:26:56] generate: pipeline ... [03:26:56] generate: pipeline done: 0.04s [03:26:57] upload: profile_data ... [03:26:57] upload: profile_data done: 0.08s [03:26:58] upload: profile_data ... [03:26:58] upload: profile_data done: 0.09s [03:27:01] upload: profile_data ... [03:27:01] upload: profile_data done: 0.07s [03:27:03] upload: profile_data ... [03:27:03] upload: profile_data done: 0.07s [03:27:05] upload: profile_data ... [03:27:05] upload: profile_data done: 0.07s [03:27:08] upload: profile_data ... [03:27:08] upload: profile_data done: 0.08s [03:27:09] upload: profile_data ... [03:27:10] upload: profile_data done: 0.08s [03:27:15] upload: profile_data ... [03:27:15] upload: profile_data done: 0.02s [03:27:17] upload: profile_data ... [03:27:17] upload: profile_data done: 0.08s i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "analytics" -- Level "hifi" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: FALSE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "redact" * Preserve correlations: "high" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" ! Risk acknowledged by user -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "demo" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: TRUE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "none" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "analytics" -- Level "hifi" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: FALSE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "redact" * Preserve correlations: "high" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" ! Risk acknowledged by user i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "development" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: FALSE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "moderate" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Relationship-aware synthesis uses synthpop when installed. [03:27:30] upload: profile_data ... [03:27:30] upload: profile_data done: 0.07s [03:27:30] upload: profile_data ... [03:27:30] upload: profile_data done: 0.08s [03:27:31] upload: profile_data ... [03:27:31] upload: profile_data done: 0.12s [03:27:32] upload: profile_data ... [03:27:32] upload: profile_data done: 0.10s [03:27:33] upload: profile_data ... [03:27:33] upload: profile_data done: 0.06s [03:27:34] upload: profile_data ... [03:27:34] upload: profile_data done: 0.06s Tracing function "url" in package "namespace:base" Tracing function "socketConnection" in package "namespace:base" Tracing function "download.file" in package "namespace:utils" Untracing function "download.file" in package "namespace:utils" Untracing function "socketConnection" in package "namespace:base" Untracing function "url" in package "namespace:base" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. Attaching package: 'bslib' The following object is masked from 'package:utils': page i `remove_ids` is TRUE: masking 1 ID column "record_id" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:37] synthesize_synthpop: building synthpop args [03:27:37] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=30 Variable(s): city, group have been changed for synthesis from character to factor. [03:27:37] synthesize_synthpop: synthpop done Variables changed from character to factor x 2 in syn and 2 in orig ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable -- DataGangeR Privacy Check (pre stage) ---------------------------------------- -- x HIGH severity (1) -- * patient_id: ID column detected Recommendation: Review whether this column should be excluded from synthetic output -- DataGangeR Privacy Check (pre stage) ---------------------------------------- v No flags raised. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:38] synthesize_synthpop: building synthpop args [03:27:38] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=50 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:27:38] synthesize_synthpop: synthpop done smoking_status changed from integer to numeric in original to match synthetic ***************************************************************** Differences detected and corrections attempted check output above. Synthetic data or original or both adjusted with synorig.compare to try to make them comparable -- DataGangeR Profile ---------------------------------------------------------- 3 rows x 1 column -- Column types -- * numeric: 1 -- Missingness summary -- Total missing: 0 / 3 (0%) -- Per-column details -- -- x (numeric) * Missing: 0 (0%) * Distinct values: 3 * Range: [1, 3] * Mean (SD): 2 (1) * Median (IQR): 2 (1.5 -- 2.5) i Generated at 2026-07-22 03:27:39.320825 Saving _problems/test-relationship-interaction-169.R Tracing function "browseURL" in package "namespace:utils" -- Pre-filled GitHub issue -- GitHub issue URL: Issue body: Untracing function "browseURL" in package "namespace:utils" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:41] synthesize_synthpop: building synthpop args [03:27:41] synthesize_synthpop: calling synthpop::syn() on 8 column(s), k=200 Warning: In your synthesis there are numeric variables with 5 or fewer levels: smoking_status. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:27:42] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Not enough numeric columns (1) for correlation comparison. Need at least 2 numeric columns with non-zero variance. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. -- DataGangeR Synthesis Spec --------------------------------------------------- -- Purpose "demo" -- Level "marginal" -- Key settings * Name strategy: "preserve" * Coarsen dates: TRUE * Merge rare levels: TRUE (min_n = 5) * Minimum cell size (k-anonymity): 5 * Free text strategy: "drop" * Preserve correlations: "none" * Preserve missingness: "approx" * Engine: "auto (derived from objective)" i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:46] synthesize_synthpop: building synthpop args [03:27:46] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=30 Variable(s): y have been changed for synthesis from character to factor. [03:27:46] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:46] synthesize_synthpop: building synthpop args [03:27:46] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 Variable(s): y have been changed for synthesis from character to factor. [03:27:46] synthesize_synthpop: synthpop done [03:27:46] synthesize_synthpop: building synthpop args [03:27:46] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 Variable(s): y have been changed for synthesis from character to factor. [03:27:46] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:46] synthesize_synthpop: building synthpop args [03:27:46] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 Variable(s): y have been changed for synthesis from character to factor. [03:27:47] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. i `remove_ids` is TRUE: masking 1 ID column "id" [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 Variable(s): y have been changed for synthesis from character to factor. [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=25 Variable(s): group have been changed for synthesis from character to factor. Warning: In your synthesis there are numeric variables with 5 or fewer levels: score. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=20 [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: building synthpop args [03:27:48] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=10 Variable(s): group have been changed for synthesis from character to factor. Warning: In your synthesis there are numeric variables with 5 or fewer levels: score. Consider changing them to factors. You can do it using parameter 'minnumlevels'. [03:27:48] synthesize_synthpop: synthpop done [03:27:48] synthesize_synthpop: marginal bridge for 1 column(s) i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=50 Variable(s): month, region have been changed for synthesis from character to factor. [03:27:49] synthesize_synthpop: synthpop done [03:27:49] synthesize_synthpop: marginal bridge for 1 column(s) i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=60 [03:27:49] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 3 column(s), k=400 [03:27:49] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=200 Variable(s): arm have been changed for synthesis from character to factor. [03:27:49] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=300 [03:27:49] synthesize_synthpop: synthpop done i Development synthesis uses synthpop for correlation-aware output when installed; review privacy warnings before sharing. [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=80 Variable(s): grp have been changed for synthesis from character to factor. [03:27:49] synthesize_synthpop: synthpop done [03:27:49] synthesize_synthpop: building synthpop args [03:27:49] synthesize_synthpop: calling synthpop::syn() on 2 column(s), k=80 Variable(s): grp have been changed for synthesis from character to factor. [03:27:50] synthesize_synthpop: synthpop done [ FAIL 1 | WARN 6 | SKIP 11 | PASS 1324 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • CLI shim subprocess is covered by source tests and manual smoke tests (1): 'test-cli-execution.R:118:3' • On CRAN (2): 'test-app-css.R:13:3', 'test-run-synthesis-async.R:22:3' • R/ source not available (installed package) (1): 'test-no-network.R:61:3' • ggplot2 is installed (1): 'test-compare-synthetic.R:191:3' • shiny, bslib, and DT are installed — skipping absent-package test (1): 'test-run-app.R:4:3' • synthpop is installed (4): 'test-synthesize-data.R:163:3', 'test-synthesize-data.R:192:3', 'test-synthpop-fidelity.R:71:3', 'test-synthpop-fidelity.R:83:3' • write_sas did not preserve labelling on this platform (1): 'test-read-input.R:70:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-relationship-interaction.R:169:3'): labelled original columns compare with plain synthetic columns ── Expected `is.finite(result$p_value)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 6 | SKIP 11 | PASS 1324 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s/16s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-ATLAS/dataganger.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:04.91, 130.40 + 10.04