* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/cvasi.Rcheck’
* using R Under development (unstable) (2024-05-07 r86527)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (GCC) 14.1.0
    GNU Fortran (GCC) 14.1.0
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘cvasi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cvasi’ version ‘0.10.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cvasi’ can be installed ... [18s/21s] OK
* used C compiler: ‘gcc-14 (GCC) 14.1.0’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/22s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [30s/35s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [75s/85s]
 [75s/86s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [56s/73s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘howto.Rmd’ using rmarkdown
** Processing: ../doc/figures/howto-unnamed-chunk-9-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4584 bytes
Input file size = 5436 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4077
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4077

Output IDAT size = 4077 bytes (507 bytes decrease)
Output file size = 4155 bytes (1281 bytes = 23.57% decrease)

** Processing: ../doc/figures/howto-unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10247 bytes
Input file size = 11117 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9302
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 8920
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 8909
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 8909

Output IDAT size = 8909 bytes (1338 bytes decrease)
Output file size = 8987 bytes (2130 bytes = 19.16% decrease)

** Processing: ../doc/figures/howto-unnamed-chunk-11-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7601 bytes
Input file size = 8456 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6683
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6683

Output IDAT size = 6683 bytes (918 bytes decrease)
Output file size = 6761 bytes (1695 bytes = 20.04% decrease)

** Processing: ../doc/figures/howto-unnamed-chunk-13-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5161 bytes
Input file size = 6016 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4655
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4645
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4645

Output IDAT size = 4645 bytes (516 bytes decrease)
Output file size = 4723 bytes (1293 bytes = 21.49% decrease)


Quitting from lines  at lines 348-388 [unnamed-chunk-14] (howto.Rmd)
Error: processing vignette 'howto.Rmd' failed with diagnostics:
L-BFGS-B needs finite values of 'fn'
--- failed re-building ‘howto.Rmd’

--- re-building ‘manual.Rmd’ using rmarkdown
--- finished re-building ‘manual.Rmd’

SUMMARY: processing the following file failed:
  ‘howto.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [12s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-ATLAS/cvasi.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:14.64, 238.77 + 17.36