* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/WormTensor.Rcheck’
* using R Under development (unstable) (2025-12-27 r89243)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘WormTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘WormTensor’ version ‘0.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘WormTensor’ can be installed ... [26s/43s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... [6s/10s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/10s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/10s] OK
* checking loading without being on the library search path ... [8s/11s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [33s/52s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/11s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [11s/18s]
 [11s/18s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(WormTensor)
  > 
  > test_check("WormTensor")
  trying URL 'https://ndownloader.figshare.com/files/35963780'
  Saving _problems/test-as_worm_tensor-3.R
  trying URL 'https://ndownloader.figshare.com/files/35963780'
  Saving _problems/test-worm_clustering-4.R
  trying URL 'https://ndownloader.figshare.com/files/35963777'
  Saving _problems/test-worm_download-7.R
  trying URL 'https://ndownloader.figshare.com/files/35963780'
  Saving _problems/test-worm_evaluate-5.R
  trying URL 'https://ndownloader.figshare.com/files/35963780'
  Saving _problems/test-worm_membership-3.R
  trying URL 'https://ndownloader.figshare.com/files/35963780'
  Saving _problems/test-worm_visualize-10.R
  [ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-as_worm_tensor.R:2:1'): (code run outside of `test_that()`) ────
  Error in `download.file("https://ndownloader.figshare.com/files/35963780", tempfile1)`: cannot open URL 'https://ndownloader.figshare.com/files/35963780'
  Backtrace:
      ▆
   1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-as_worm_tensor.R:2:1
   2. │ └─WormTensor:::.check_as_worm_tensor(Ds)
   3. │   └─base::lapply(...)
   4. └─WormTensor::worm_download()
   5.   └─utils::download.file(...)
  ── Error ('test-worm_clustering.R:2:1'): (code run outside of `test_that()`) ───
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://ndownloader.figshare.com/files/35963780'
  Backtrace:
      ▆
   1. ├─WormTensor::worm_membership(...) at test-worm_clustering.R:2:1
   2. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
   3. │ └─WormTensor:::.check_as_worm_tensor(Ds)
   4. │   └─base::lapply(...)
   5. ├─WormTensor::worm_download()
   6. │ └─utils::download.file(...)
   7. └─base::.handleSimpleError(...)
   8.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-worm_download.R:7:1'): (code run outside of `test_that()`) ─────
  Error in `download.file("https://ndownloader.figshare.com/files/35963777", tempfile1)`: cannot open URL 'https://ndownloader.figshare.com/files/35963777'
  Backtrace:
      ▆
   1. └─WormTensor::worm_download("Euclid") at test-worm_download.R:7:1
   2.   └─utils::download.file(...)
  ── Error ('test-worm_evaluate.R:2:1'): (code run outside of `test_that()`) ─────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://ndownloader.figshare.com/files/35963780'
  Backtrace:
       ▆
    1. ├─WormTensor::worm_clustering(...) at test-worm_evaluate.R:2:1
    2. ├─WormTensor::worm_membership(...)
    3. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
    4. │ └─WormTensor:::.check_as_worm_tensor(Ds)
    5. │   └─base::lapply(...)
    6. ├─WormTensor::worm_download()
    7. │ └─utils::download.file(...)
    8. ├─base::.handleSimpleError(...)
    9. │ └─base (local) h(simpleError(msg, call))
   10. └─base::.handleSimpleError(...)
   11.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-worm_membership.R:2:1'): (code run outside of `test_that()`) ───
  Error in `download.file("https://ndownloader.figshare.com/files/35963780", tempfile1)`: cannot open URL 'https://ndownloader.figshare.com/files/35963780'
  Backtrace:
      ▆
   1. ├─WormTensor::as_worm_tensor(worm_download()$Ds) at test-worm_membership.R:2:1
   2. │ └─WormTensor:::.check_as_worm_tensor(Ds)
   3. │   └─base::lapply(...)
   4. └─WormTensor::worm_download()
   5.   └─utils::download.file(...)
  ── Error ('test-worm_visualize.R:5:1'): (code run outside of `test_that()`) ────
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'worm_visualize': error in evaluating the argument 'object' in selecting a method for function 'worm_evaluate': error in evaluating the argument 'object' in selecting a method for function 'worm_clustering': error in evaluating the argument 'object' in selecting a method for function 'worm_membership': cannot open URL 'https://ndownloader.figshare.com/files/35963780'
  Backtrace:
       ▆
    1. ├─WormTensor::worm_visualize(...) at test-worm_visualize.R:5:1
    2. ├─WormTensor::worm_evaluate(...)
    3. ├─WormTensor::worm_clustering(...)
    4. ├─WormTensor::worm_membership(...)
    5. ├─WormTensor::as_worm_tensor(worm_download()$Ds)
    6. │ └─WormTensor:::.check_as_worm_tensor(Ds)
    7. │   └─base::lapply(...)
    8. ├─WormTensor::worm_download()
    9. │ └─utils::download.file(...)
   10. ├─base::.handleSimpleError(...)
   11. │ └─base (local) h(simpleError(msg, call))
   12. ├─base::.handleSimpleError(...)
   13. │ └─base (local) h(simpleError(msg, call))
   14. ├─base::.handleSimpleError(...)
   15. │ └─base (local) h(simpleError(msg, call))
   16. └─base::.handleSimpleError(...)
   17.   └─base (local) h(simpleError(msg, call))
  
  [ FAIL 6 | WARN 9 | SKIP 0 | PASS 31 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [22s/35s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘WormTensor.Rmd’ using rmarkdown
trying URL 'https://ndownloader.figshare.com/files/35963780'

Quitting from WormTensor.Rmd:38-40 [worm_download]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://ndownloader.figshare.com/files/35963780'
---
Backtrace:
    ▆
 1. └─WormTensor::worm_download()
 2.   └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'WormTensor.Rmd' failed with diagnostics:
cannot open URL 'https://ndownloader.figshare.com/files/35963780'
--- failed re-building ‘WormTensor.Rmd’

SUMMARY: processing the following file failed:
  ‘WormTensor.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [7s/10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-ATLAS/WormTensor.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:05.33, 215.61 + 22.16