* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/StreamCatTools.Rcheck’
* using R Under development (unstable) (2026-05-19 r90065)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-05-20 09:43:16 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘StreamCatTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘StreamCatTools’ version ‘0.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘StreamCatTools’ can be installed ... [12s/22s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/10s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [0m/24m]
 [0m/24m] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(StreamCatTools)
  > 
  > test_check("StreamCatTools")
  Saving _problems/test-lc_get_comid-8.R
  [ FAIL 1 | WARN 1 | SKIP 36 | PASS 4 ]
  
  ══ Skipped tests (36) ══════════════════════════════════════════════════════════
  • On CRAN (36): 'test-lc_get_nlcd.R:5:3', 'test-lc_get_nlcd.R:14:3',
    'test-lc_get_params.R:4:3', 'test-lc_get_params.R:11:3',
    'test-lc_get_params.R:18:3', 'test-lc_get_params.R:28:3',
    'test-lc_get_params.R:35:3', 'test-lc_get_params.R:42:3',
    'test-lc_get_params.R:50:3', 'test-lc_get_watershed.R:4:3',
    'test-lc_getdata.R:5:3', 'test-lc_getdata.R:14:3', 'test-lc_getdata.R:23:3',
    'test-lc_getdata.R:32:3', 'test-lc_plot.R:5:3', 'test-sc_get_nlcd.R:5:3',
    'test-sc_get_nlcd.R:14:3', 'test-sc_get_nni.R:5:3', 'test-sc_get_nni.R:14:3',
    'test-sc_get_params.R:5:3', 'test-sc_get_params.R:12:3',
    'test-sc_get_params.R:22:3', 'test-sc_get_params.R:29:3',
    'test-sc_get_params.R:36:3', 'test-sc_get_params.R:43:3',
    'test-sc_get_params.R:50:3', 'test-sc_get_params.R:58:3',
    'test-sc_get_params.R:66:3', 'test-sc_get_params.R:76:3',
    'test-sc_getdata.R:4:3', 'test-sc_getdata.R:12:3', 'test-sc_getdata.R:22:3',
    'test-sc_getdata.R:31:3', 'test-sc_getdata.R:40:3', 'test-sc_getdata.R:49:3',
    'test-sc_plot.R:5:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-lc_get_comid.R:8:3'): lc_get_comid for sample coordinates ──────
  Error in `if (!is.null(out[[i]]) && inherits(out[[i]], "sf") & nrow(out[[i]]) == limit) {     offset <- offset + limit }`: argument is of length zero
  Backtrace:
       ▆
    1. └─StreamCatTools::lc_get_comid(lakes) at test-lc_get_comid.R:8:3
    2.   ├─base::do.call(...)
    3.   └─base::lapply(...)
    4.     └─StreamCatTools (local) FUN(X[[i]], ...)
    5.       └─nhdplusTools::get_waterbodies(dd[i, ])
    6.         ├─nhdplusTools:::query_usgs_oafeat(...)
    7.         │ ├─base::withVisible(eval(mc, parent.frame()))
    8.         │ └─base::eval(mc, parent.frame())
    9.         │   └─base::eval(mc, parent.frame())
   10.         └─nhdplusTools (local) `<fn>`(...)
   11.           └─nhdplusTools:::get_oafeat(...)
   12.             └─nhdplusTools:::get_features_paging(...)
  
  [ FAIL 1 | WARN 1 | SKIP 36 | PASS 4 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [17s/47s] OK
* checking PDF version of manual ... [8s/15s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-ATLAS/StreamCatTools.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 27:27.84, 118.63 + 14.08