* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/RAZIAD.Rcheck’ * using R Under development (unstable) (2024-05-07 r86527) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.1.0 GNU Fortran (GCC) 14.1.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘RAZIAD/DESCRIPTION’ ... OK * this is package ‘RAZIAD’ version ‘0.0.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RAZIAD’ can be installed ... [18s/38s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [42s/95s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [18s/32s] ERROR Running examples in ‘RAZIAD-Ex.R’ failed The error most likely occurred in: > ### Name: fisher.reg > ### Title: Fisher Information computation for calculating the confidence > ### intervals in Zero-inflated and Zero-altered regression models > ### Aliases: fisher.reg > > ### ** Examples > > intercept<- rep(1,4406) > dt = DebTrivedi[, c(6:8, 13, 15, 18)] > dt = cbind(intercept, dt) > dt$gender.male <- ifelse(dt$gender == 'male', 1, 0) > dt$gender.female <- ifelse(dt$gender == 'female', 1, 0) > dt$health.poor <- ifelse(dt$health == 'poor', 1, 0) > dt$health.average <- ifelse(dt$health == 'average', 1, 0) > dt$health.excellent <- ifelse(dt$health == 'excellent', 1, 0) > dt$privins.yes <- ifelse(dt$privins == 'yes', 1, 0) > dt$privins.no <- ifelse(dt$privins == 'no', 1, 0) > y = DebTrivedi[,1] > x = data.matrix(dt[, c(1, 2, 4, 6, 8, 10, 12, 13)]) > np = dim(x)[2] > b0 = c (0.1,0.10,0.1,0.1,0.1,0.1,0.1,0.1, + 0.2,0.20,0.20,0.20,0.20,0.20,0.20,0.20) > fisher.reg(x, y, b0=b0, m=1e3, dist="ZIP", link="probit") Error in solve.default(Fisher) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0 Calls: fisher.reg -> solve -> solve.default Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking PDF version of manual ... [7s/17s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-ATLAS/RAZIAD.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:56.32, 102.72 + 7.67