* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/ISwR.Rcheck’
* using R Under development (unstable) (2022-04-20 r82224)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ISwR/DESCRIPTION’ ... OK
* this is package ‘ISwR’ version ‘2.0-8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ISwR’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘allexercises.R’ [8s/12s]
  Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...192c192
< In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
---
> In wilcox.test.default(x = c(4.62, 5.29, 5.52, 3.71, 4.02, 5.09,  :
224c224
< alternative hypothesis: true mean difference is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
228c228
< mean difference 
---
> mean of the differences 
1035c1035
< id     15     51138 70816 252.47  2.4254 0.05287 .
---
> id     15     51137 70816 252.47  2.4254 0.05287 .
1045c1045
< id        15  51138  3409.2  2.4254 0.05287 .
---
> id        15  51137  3409.2  2.4254 0.05287 .
  Running ‘allscripts.R’
  Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ...487c487
< [1] 187
---
> [1] 185
982c982
< alternative hypothesis: true difference in means between group lean and group obese is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
995c995
< alternative hypothesis: true difference in means between group lean and group obese is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
1024c1024
< In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) :
---
> In wilcox.test.default(x = c(7.53, 7.48, 8.08, 8.09, 10.15, 8.4,  :
1049c1049
< alternative hypothesis: true mean difference is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
1053c1053
< mean difference 
---
> mean of the differences 
2749,2751c2749,2751
< gr          1 206698  206698     NaN    NaN
< factor(gr)  4  17405    4351     NaN    NaN
< Residuals   0      0     NaN               
---
> gr          1 206698  206698               
> factor(gr)  4  17405    4351               
> Residuals   0      0                       
3004c3004
< alternative hypothesis: true difference in means between group Yes and group No is not equal to 0
---
> alternative hypothesis: true difference in means is not equal to 0
3620c3620
< [1,] 205     57     NA      NA      NA
---
>     205      57      NA      NA      NA 
 [15s/20s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: OK

Time 1:18.32, 44.68 + 6.69