* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/ISwR.Rcheck’ * using R Under development (unstable) (2022-04-20 r82224) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘ISwR/DESCRIPTION’ ... OK * this is package ‘ISwR’ version ‘2.0-8’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ISwR’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘allexercises.R’ [8s/12s] Comparing ‘allexercises.Rout’ to ‘allexercises.Rout.save’ ...192c192 < In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) : --- > In wilcox.test.default(x = c(4.62, 5.29, 5.52, 3.71, 4.02, 5.09, : 224c224 < alternative hypothesis: true mean difference is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 228c228 < mean difference --- > mean of the differences 1035c1035 < id 15 51138 70816 252.47 2.4254 0.05287 . --- > id 15 51137 70816 252.47 2.4254 0.05287 . 1045c1045 < id 15 51138 3409.2 2.4254 0.05287 . --- > id 15 51137 3409.2 2.4254 0.05287 . Running ‘allscripts.R’ Comparing ‘allscripts.Rout’ to ‘allscripts.Rout.save’ ...487c487 < [1] 187 --- > [1] 185 982c982 < alternative hypothesis: true difference in means between group lean and group obese is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 995c995 < alternative hypothesis: true difference in means between group lean and group obese is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 1024c1024 < In wilcox.test.default(x = DATA[[1L]], y = DATA[[2L]], ...) : --- > In wilcox.test.default(x = c(7.53, 7.48, 8.08, 8.09, 10.15, 8.4, : 1049c1049 < alternative hypothesis: true mean difference is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 1053c1053 < mean difference --- > mean of the differences 2749,2751c2749,2751 < gr 1 206698 206698 NaN NaN < factor(gr) 4 17405 4351 NaN NaN < Residuals 0 0 NaN --- > gr 1 206698 206698 > factor(gr) 4 17405 4351 > Residuals 0 0 3004c3004 < alternative hypothesis: true difference in means between group Yes and group No is not equal to 0 --- > alternative hypothesis: true difference in means is not equal to 0 3620c3620 < [1,] 205 57 NA NA NA --- > 205 57 NA NA NA [15s/20s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK Time 1:18.32, 44.68 + 6.69