* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/BIEN.Rcheck’
* using R Under development (unstable) (2026-04-13 r89874)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
    GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-04-13 18:37:59 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘BIEN/DESCRIPTION’ ... OK
* this is package ‘BIEN’ version ‘1.2.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BIEN’ can be installed ... [45s/57s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [12s/18s] OK
* checking whether the package can be loaded with stated dependencies ... [13s/17s] OK
* checking whether the package can be unloaded cleanly ... [13s/19s] OK
* checking whether the namespace can be loaded with stated dependencies ... [13s/21s] OK
* checking whether the namespace can be unloaded cleanly ... [13s/20s] OK
* checking loading without being on the library search path ... [13s/18s] OK
* checking whether startup messages can be suppressed ... [14s/21s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [62s/83s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/33s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [16s/48s]
 [16s/49s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [31s/82s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘BIEN.Rmd’ using rmarkdown
--- finished re-building ‘BIEN.Rmd’

--- re-building ‘BIEN_tutorial.Rmd’ using rmarkdown

Quitting from BIEN_tutorial.Rmd:101-105 [xs-occurrences]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `postgresqlNewConnection()`:
! RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: FATAL:  remaining connection slots are reserved for non-replication superuser connections
---
Backtrace:
    ▆
 1. └─BIEN::BIEN_occurrence_species(species = "Xanthium strumarium")
 2.   └─BIEN:::.BIEN_sql(query, ...)
 3.     ├─DBI::dbConnect(...)
 4.     └─RPostgreSQL::dbConnect(...)
 5.       └─RPostgreSQL::postgresqlNewConnection(drv, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BIEN_tutorial.Rmd' failed with diagnostics:
RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: FATAL:  remaining connection slots are reserved for non-replication superuser connections

--- failed re-building ‘BIEN_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘BIEN_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [17s/43s] OK
* checking HTML version of manual ... [12s/30s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-ATLAS/BIEN.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 13:10.27, 434.58 + 22.03