* installing *source* package ‘vapour’ ...
** this is package ‘vapour’ version ‘0.12.0’
** package ‘vapour’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang -mmacos-version-min=26 -std=gnu23
configure: CXX: clang++ -mmacos-version-min=26 -std=gnu++17
checking for gdal-config... /opt/R/arm64/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.12.0
checking GDAL version >= 2.0.1... yes
checking for gcc... clang -mmacos-version-min=26 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -mmacos-version-min=26 -std=gnu23 accepts -g... yes
checking for clang -mmacos-version-min=26 -std=gnu23 option to accept ISO C89... unsupported
checking how to run the C preprocessor... clang -mmacos-version-min=26 -std=gnu23 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.12.0
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.7.0
configure: LIBS: -L/opt/R/arm64/lib -lproj -lcurl -lc++ -lsqlite3 -lz -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz    -L/opt/R/arm64/lib -lgdal -lcrypto -lfreexl -lgeos_c -lgeos -lexpat -lopenjp2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lmfhdf -ldf -lpng -lpq -llz4 -lzstd -llzma -lproj -ltiff -lwebp -lsharpyuv -llzma -ljpeg -lsqlite3 -lpcre2-8 -lcurl -liconv -lxml2 -lz -lm -ldeflate
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
ld: warning: ignoring duplicate libraries: '-ldeflate', '-ljpeg', '-llzma', '-lm', '-lwebp', '-lz', '-lzstd'
configure: Package CPP flags:  -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include
configure: Package LIBS:  -L/opt/R/arm64/lib -lgdal -lcrypto -lfreexl -lgeos_c -lgeos -lexpat -lopenjp2 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lmfhdf -ldf -lpng -lpq -llz4 -lzstd -llzma -lproj -ltiff -lwebp -lsharpyuv -llzma -ljpeg -lsqlite3 -lpcre2-8 -lcurl -liconv -lxml2 -lz -lm -ldeflate -L/opt/R/arm64/lib -lproj -lcurl -lc++ -lsqlite3 -lz -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.4.4.1)’
using SDK: ‘MacOSX26.1.sdk’
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 000-stream.cpp -o 000-stream.o
In file included from 000-stream.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 000-stream.cpp:2:
../inst/include/gdalarrowstream/gdalvectorstream.h:241:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  241 |   OGRSpatialReference* crs = poLayer->GetSpatialRef();
      |                        ^     ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [000-stream.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 000-warpgeneral.cpp -o 000-warpgeneral.o
In file included from 000-warpgeneral.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 000-warpgeneral.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [000-warpgeneral.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_config.cpp -o 00_config.o
In file included from 00_config.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_config.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [00_config.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_gdal.cpp -o 00_gdal.o
In file included from 00_gdal.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_gdal.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [00_gdal.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_geometry.cpp -o 00_geometry.o
In file included from 00_geometry.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_geometry.cpp:2:
In file included from ../inst/include/gdalgeometry/gdalgeometry.h:11:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [00_geometry.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_raster.cpp -o 00_raster.o
In file included from 00_raster.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_raster.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [00_raster.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_raster_block_io.cpp -o 00_raster_block_io.o
In file included from 00_raster_block_io.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_raster_block_io.cpp:2:
In file included from ../inst/include/gdalreadwrite/gdalreadwrite.h:8:
../inst/include/gdallibrary/gdallibrary.h:760:24: error: cannot initialize a variable of type 'OGRSpatialReference *' with an rvalue of type 'const OGRSpatialReference *'
  760 |   OGRSpatialReference *SRS =  poLayer->GetSpatialRef();
      |                        ^      ~~~~~~~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [00_raster_block_io.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_utils.cpp -o 00_utils.o
In file included from 00_utils.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_utils.cpp:2:
../inst/include/gdalapplib/gdalapplib.h:206:57: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  206 |   GDALDataset *vrt = (GDALDataset*)GDALBuildVRT("", dsn.size(), nullptr, string_to_charptr(dsn).data(), opt, &err); 
      |                                    ~~~~~~~~~~~~     ~~~~^~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c 00_vrt.cpp -o 00_vrt.o
In file included from 00_vrt.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from 00_vrt.cpp:3:
../inst/include/gdalapplib/gdalapplib.h:206:57: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  206 |   GDALDataset *vrt = (GDALDataset*)GDALBuildVRT("", dsn.size(), nullptr, string_to_charptr(dsn).data(), opt, &err); 
      |                                    ~~~~~~~~~~~~     ~~~~^~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I/opt/R/arm64/include -I/opt/R/arm64/include/webp -I/opt/R/arm64/include -DHAVE_PROJ_H -I/opt/R/arm64/include -I../inst/include/    -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c warp_file.cpp -o warp_file.o
In file included from warp_file.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from warp_file.cpp:2:
../inst/include/gdalapplib/gdalapplib.h:206:57: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  206 |   GDALDataset *vrt = (GDALDataset*)GDALBuildVRT("", dsn.size(), nullptr, string_to_charptr(dsn).data(), opt, &err); 
      |                                    ~~~~~~~~~~~~     ~~~~^~~~~~
2 warnings generated.
make[1]: Target `all' not remade because of errors.
ERROR: compilation failed for package ‘vapour’
* removing ‘/Users/ripley/R/packages/tests-devel/vapour.Rcheck/vapour’