* using log directory ‘/Users/ripley/R/packages/tests-devel/tsissm.Rcheck’
* using R Under development (unstable) (2026-06-29 r90199)
* using platform: aarch64-apple-darwin25.5.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.5.2
* using session charset: UTF-8
* current time: 2026-07-01 18:10:23 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘tsissm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tsissm’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tsissm’ can be installed ... [50s/42s] OK
* used C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
* used SDK: ‘MacOSX26.5.sdk’
* checking installed package size ... INFO
  installed size is 14.6Mb
  sub-directories of 1Mb or more:
    libs  13.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(tsissm)
  Loading required package: Rcpp
  Loading required package: tsmethods
  > 
  > test_check("tsissm")
  Error in `source_dir()`:
  ! Failed to evaluate './helper-global.R'.
  Caused by error:
  ! '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
       ▆
    1. ├─testthat::test_check("tsissm")
    2. │ └─testthat::test_dir(...)
    3. │   └─testthat:::test_files(...)
    4. │     └─testthat:::test_files_serial(...)
    5. │       └─testthat:::test_files_setup_state(...)
    6. │         └─testthat::source_test_helpers(".", env)
    7. │           └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
    8. │             └─base::lapply(...)
    9. │               └─testthat (local) FUN(X[[i]], ...)
   10. │                 └─testthat::source_file(...)
   11. │                   ├─base::withCallingHandlers(...)
   12. │                   └─base::eval(exprs, env)
   13. │                     └─base::eval(exprs, env)
   14. │                       ├─tsmethods::estimate(spec_constant_benchmark) at ./helper-global.R:7:1
   15. │                       └─tsissm:::estimate.tsissm.spec(spec_constant_benchmark)
   16. │                         └─tsissm:::.estimate_ad_constant(...)
   17. │                           └─tsissm:::issm_constraint(fun$par, fun, issmenv)
   18. │                             └─RTMB (local) makeADFun2(...)
   19. │                               └─obj$retape()
   20. │                                 └─RTMB:::MakeADFunObject(...)
   21. │                                   └─RTMB:::.MakeTape(mapfunc, obj$env$par)
   22. │                                     └─RTMB (local) f(x)
   23. │                                       └─tsissm (local) func(pl)
   24. │                                         ├─base::eigen(D, symmetric = FALSE, only.values = TRUE)
   25. │                                         └─RTMB::eigen(D, symmetric = FALSE, only.values = TRUE)
   26. │                                           ├─base::eigen(x, symmetric, only.values, EISPACK)
   27. │                                           └─RTMB::eigen(x, symmetric, only.values, EISPACK)
   28. │                                             └─RTMB::Math.advector(colSums(Re(V * Conj(V))))
   29. │                                               └─RTMB:::Math1(x, .Generic, ...)
   30. ├─base::stop(`<Rcpp::xc>`)
   31. └─testthat (local) `<fn>`(`<Rcpp::xc>`)
   32.   └─cli::cli_abort(...)
   33.     └─rlang::abort(...)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [39s/40s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘demo_ensembling.Rmd’ using rmarkdown

Quitting from demo_ensembling.Rmd:90-92 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dimnames(x) <- dnx`:
! 'dimnames' applied to non-array
---
Backtrace:
    ▆
 1. ├─flextable::as_flextable(summary(mod$models[[1]]))
 2. └─flextable:::as_flextable.table(summary(mod$models[[1]]))
 3.   ├─base::as.data.frame(x)
 4.   └─base::as.data.frame.table(x)
 5.     ├─base::eval(ex)
 6.     │ └─base::eval(ex)
 7.     ├─base::data.frame(...)
 8.     ├─base::do.call(...)
 9.     └─base::provideDimnames(x, sep = sep, base = base)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'demo_ensembling.Rmd' failed with diagnostics:
'dimnames' applied to non-array
--- failed re-building ‘demo_ensembling.Rmd’

--- re-building ‘demo_filtering.Rmd’ using rmarkdown

Quitting from demo_filtering.Rmd:50-64 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '*this' is not a valid 'advector' (constructed using illegal operation?)
---
Backtrace:
     ▆
  1. ├─tsmethods::estimate(spec)
  2. └─tsissm:::estimate.tsissm.spec(spec)
  3.   └─tsissm:::.estimate_ad_constant(...)
  4.     └─tsissm:::issm_constraint(fun$par, fun, issmenv)
  5.       └─RTMB (local) makeADFun2(...)
  6.         └─obj$retape()
  7.           └─RTMB:::MakeADFunObject(...)
  8.             └─RTMB:::.MakeTape(mapfunc, obj$env$par)
  9.               └─RTMB (local) f(x)
 10.                 └─tsissm (local) func(pl)
 11.                   ├─base::eigen(D, symmetric = FALSE, only.values = TRUE)
 12.                   └─RTMB::eigen(D, symmetric = FALSE, only.values = TRUE)
 13.                     ├─base::eigen(x, symmetric, only.values, EISPACK)
 14.                     └─RTMB::eigen(x, symmetric, only.values, EISPACK)
 15.                       └─RTMB::Math.advector(colSums(Re(V * Conj(V))))
 16.                         └─RTMB:::Math1(x, .Generic, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'demo_filtering.Rmd' failed with diagnostics:
'*this' is not a valid 'advector' (constructed using illegal operation?)
--- failed re-building ‘demo_filtering.Rmd’

--- re-building ‘demo_missing_data.Rmd’ using rmarkdown

Quitting from demo_missing_data.Rmd:82-99 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '*this' is not a valid 'advector' (constructed using illegal operation?)
---
Backtrace:
     ▆
  1. ├─tsmethods::estimate(spec_naive, scores = FALSE)
  2. └─tsissm:::estimate.tsissm.spec(spec_naive, scores = FALSE)
  3.   └─tsissm:::.estimate_ad_constant(...)
  4.     └─tsissm:::issm_constraint(fun$par, fun, issmenv)
  5.       └─RTMB (local) makeADFun2(...)
  6.         └─obj$retape()
  7.           └─RTMB:::MakeADFunObject(...)
  8.             └─RTMB:::.MakeTape(mapfunc, obj$env$par)
  9.               └─RTMB (local) f(x)
 10.                 └─tsissm (local) func(pl)
 11.                   ├─base::eigen(D, symmetric = FALSE, only.values = TRUE)
 12.                   └─RTMB::eigen(D, symmetric = FALSE, only.values = TRUE)
 13.                     ├─base::eigen(x, symmetric, only.values, EISPACK)
 14.                     └─RTMB::eigen(x, symmetric, only.values, EISPACK)
 15.                       └─RTMB::Math.advector(colSums(Re(V * Conj(V))))
 16.                         └─RTMB:::Math1(x, .Generic, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'demo_missing_data.Rmd' failed with diagnostics:
'*this' is not a valid 'advector' (constructed using illegal operation?)
--- failed re-building ‘demo_missing_data.Rmd’

--- re-building ‘demo_variance_dynamics.Rmd’ using rmarkdown

Quitting from demo_variance_dynamics.Rmd:90-101 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '*this' is not a valid 'advector' (constructed using illegal operation?)
---
Backtrace:
     ▆
  1. ├─tsmethods::estimate(spec_constant, scores = FALSE)
  2. └─tsissm:::estimate.tsissm.spec(spec_constant, scores = FALSE)
  3.   └─tsissm:::.estimate_ad_constant(...)
  4.     └─tsissm:::ar_jconstraint(fun$par, fun, issmenv)
  5.       └─RTMB (local) makeADFun2(...)
  6.         └─obj$retape()
  7.           └─RTMB:::MakeADFunObject(...)
  8.             └─RTMB:::.MakeTape(mapfunc, obj$env$par)
  9.               └─RTMB (local) f(x)
 10.                 └─tsissm (local) func(pl)
 11.                   ├─base::eigen(C, symmetric = FALSE)
 12.                   └─RTMB::eigen(C, symmetric = FALSE)
 13.                     ├─base::eigen(x, symmetric, only.values, EISPACK)
 14.                     └─RTMB::eigen(x, symmetric, only.values, EISPACK)
 15.                       └─RTMB::Math.advector(colSums(Re(V * Conj(V))))
 16.                         └─RTMB:::Math1(x, .Generic, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'demo_variance_dynamics.Rmd' failed with diagnostics:
'*this' is not a valid 'advector' (constructed using illegal operation?)
--- failed re-building ‘demo_variance_dynamics.Rmd’

--- re-building ‘issm_introduction.Rmd’ using rmarkdown
--- finished re-building ‘issm_introduction.Rmd’

SUMMARY: processing the following files failed:
  ‘demo_ensembling.Rmd’ ‘demo_filtering.Rmd’ ‘demo_missing_data.Rmd’
  ‘demo_variance_dynamics.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/ripley/R/packages/tests-devel/tsissm.Rcheck/00check.log’
for details.

      138.17 real       130.25 user        11.75 sys