* installing *source* package ‘stLMM’ ...
** this is package ‘stLMM’ version ‘0.0.2’
** package ‘stLMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
using C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
using C++17
using SDK: ‘MacOSX26.5.sdk’
clang -mmacos-version-min=26 -std=gnu23 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -falign-functions=8 -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -Wstrict-prototypes  -c Matrix_stubs.c -o Matrix_stubs.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c corModels.cpp -o corModels.o
clang -mmacos-version-min=26 -std=gnu23 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -falign-functions=8 -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -Wstrict-prototypes  -c init.c -o init.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nn.cpp -o nn.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_common.cpp -o stLMM_common.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_covariance.cpp -o stLMM_covariance.o
stLMM_covariance.cpp:68:27: warning: variable 'nThreads' set but not used [-Wunused-but-set-variable]
   68 |   int status, statusNode, nThreads, isMatern, spatialDim;
      |                           ^
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_precision.cpp -o stLMM_precision.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_predict.cpp -o stLMM_predict.o
stLMM_predict.cpp:168:10: warning: unused variable 'one' [-Wunused-variable]
  168 |   double one, h, u, mean, rBr, var;
      |          ^~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_recover.cpp -o stLMM_recover.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_sampler.cpp -o stLMM_sampler.o
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c stLMM_state.cpp -o stLMM_state.o
stLMM_sampler.cpp:78:7: warning: unused variable 'i' [-Wunused-variable]
   78 |   int i, inc;
      |       ^
stLMM_sampler.cpp:301:3: warning: add explicit braces to avoid dangling else [-Wdangling-else]
  301 |   else if(s->residualModel == 3)
      |   ^
stLMM_sampler.cpp:349:3: warning: add explicit braces to avoid dangling else [-Wdangling-else]
  349 |   else if(s->residualModel == 3)
      |   ^
stLMM_sampler.cpp:732:15: error: no member named 'min' in namespace 'std'
  732 |   step = std::min(0.01, 1.0 / std::sqrt((double)b->batchIndex));
      |               ^~~
stLMM_sampler.cpp:748:10: warning: unused variable 'j' [-Wunused-variable]
  748 |   int i, j;
      |          ^
stLMM_sampler.cpp:1135:13: warning: unused variable 'm_i' [-Wunused-variable]
 1135 |   int t, j, m_i, total_nnbr;
      |             ^~~
stLMM_sampler.cpp:2197:32: warning: variable 'fixed_r' set but not used [-Wunused-but-set-variable]
 2197 |   SEXP meta_r, td_r, global_r, fixed_r, random_r, re_terms_r, process_terms_r;
      |                                ^
6 warnings and 1 error generated.
make[1]: *** [stLMM_sampler.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/BayesLogit/include' -I'/Users/ripley/R/R-devel/library/Matrix/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c utils.cpp -o utils.o
make[1]: Target `all' not remade because of errors.
ERROR: compilation failed for package ‘stLMM’
* removing ‘/Users/ripley/R/packages/tests-devel/stLMM.Rcheck/stLMM’