* using log directory ‘/Users/ripley/R/packages/tests-devel/simDAG.Rcheck’
* using R Under development (unstable) (2026-03-28 r89738)
* using platform: aarch64-apple-darwin25.4.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.0.123.102)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.4
* using session charset: UTF-8
* current time: 2026-03-29 11:05:44 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘simDAG/DESCRIPTION’ ... OK
* this is package ‘simDAG’ version ‘0.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simDAG’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [29s/39s]
 [29s/39s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(simDAG)
  > library(testthat)
  > library(data.table)
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  > library(igraph)
  
  Attaching package: 'igraph'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  The following objects are masked from 'package:stats':
  
      decompose, spectrum
  
  The following object is masked from 'package:base':
  
      union
  
  > library(ggdag)
  
  Attaching package: 'ggdag'
  
  The following object is masked from 'package:stats':
  
      filter
  
  > 
  > data.table::setDTthreads(1)
  > 
  > test_check("simDAG")
  Saving _problems/test_network-458.R
  Saving _problems/test_node_lmer-15.R
  Saving _problems/test_node_lmer-46.R
  Saving _problems/test_node_lmer-79.R
  Saving _problems/test_node_lmer-172.R
  Saving _problems/test_node_lmer-202.R
  Saving _problems/test_node_lmer-233.R
  Saving _problems/test_node_lmer-266.R
  Saving _problems/test_node_lmer-294.R
  Saving _problems/test_node_lmer-308.R
  Saving _problems/test_node_lmer-363.R
  Saving _problems/test_node_lmer-387.R
  t = 1 node = sickness2
  t = 1 node = sickness1
  t = 2 node = sickness2
  t = 2 node = sickness1
  t = 3 node = sickness2
  t = 3 node = sickness1
  t = 4 node = sickness2
  t = 4 node = sickness1
  t = 5 node = sickness2
  t = 5 node = sickness1
  starting worker pid=77779 on localhost:11589 at 12:07:04.255
  starting worker pid=77778 on localhost:11589 at 12:07:04.262
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: simDAG
  loaded simDAG and set parent environment
  Loading required package: rngtools
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  
    |                                                                            
    |=======                                                               |  10%
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    |==============                                                        |  20%
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    |=====================                                                 |  30%
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    |===============================================================       |  90%
    |                                                                            
    |======================================================================| 100%starting worker pid=77851 on localhost:11589 at 12:07:05.510
  starting worker pid=77850 on localhost:11589 at 12:07:05.523
  Loading required package: simDAG
  Loading required package: simDAG
  loaded simDAG and set parent environment
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: rngtools
  starting worker pid=77938 on localhost:11589 at 12:07:07.158
  starting worker pid=77939 on localhost:11589 at 12:07:07.160
  Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  Loading required package: simDAG
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: rngtools
  starting worker pid=78044 on localhost:11589 at 12:07:08.792
  starting worker pid=78045 on localhost:11589 at 12:07:08.804
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  
    |                                                                            
    |=======                                                               |  10%
    |                                                                            
    |==============                                                        |  20%
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    |=====================                                                 |  30%
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    |============================                                          |  40%
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    |===================================                                   |  50%
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    |=================================================                     |  70%
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    |========================================================              |  80%
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    |===============================================================       |  90%
    |                                                                            
    |======================================================================| 100%starting worker pid=78075 on localhost:11589 at 12:07:10.190
  starting worker pid=78076 on localhost:11589 at 12:07:10.193
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  Loading required package: simDAG
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  loaded simDAG and set parent environment
  Loading required package: rngtools
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  
    |                                                                            
    |===================================                                   |  50%
    |                                                                            
    |======================================================================| 100%starting worker pid=78106 on localhost:11589 at 12:07:11.312
  starting worker pid=78107 on localhost:11589 at 12:07:11.327
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: simDAG
  loaded simDAG and set parent environment
  
  Attaching package: ‘data.table’
  
  The following object is masked from ‘package:base’:
  
      %notin%
  
  Loading required package: foreach
  Loading required package: rngtools
  
    |                                                                            
    |===================================                                   |  50%
    |                                                                            
    |======================================================================| 100%[ FAIL 12 | WARN 14 | SKIP 56 | PASS 1026 ]
  
  ══ Skipped tests (56) ══════════════════════════════════════════════════════════
  • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1',
    'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1',
    'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1',
    'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1',
    'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1',
    'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1',
    'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1',
    'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1',
    'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1',
    'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1',
    'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1',
    'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3',
    'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1',
    'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1',
    'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1',
    'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1',
    'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1',
    'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1',
    'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1',
    'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1',
    'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1',
    'test_sim_discrete_event.r:693:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_network.r:458:3'): mixing net() and mixed terms in formula syntax ──
  Expected `round(mean(data$Y), 3)` to equal `-5.302`.
  Differences:
    `actual`: -5.3000
  `expected`: -5.3020
  
  ── Failure ('test_node_lmer.r:15:3'): simple random effect ─────────────────────
  Expected `round(mean(data$Y), 3)` to equal `-1.995`.
  Differences:
    `actual`: -1.9900
  `expected`: -1.9950
  
  ── Failure ('test_node_lmer.r:46:3'): simple random effect in disrete-time simulation ──
  Expected `round(mean(data$Y), 3)` to equal `-1.864`.
  Differences:
    `actual`: -1.852
  `expected`: -1.864
  
  ── Failure ('test_node_lmer.r:79:3'): simple random effect + categorical fixed effect ──
  Expected `round(mean(data$Y), 3)` to equal `-0.519`.
  Differences:
    `actual`: -0.5130
  `expected`: -0.5190
  
  ── Failure ('test_node_lmer.r:172:3'): simple random effect + cubic terms ──────
  Expected `round(mean(data$Y), 3)` to equal `-1.802`.
  Differences:
    `actual`: -1.7970
  `expected`: -1.8020
  
  ── Failure ('test_node_lmer.r:202:3'): simple random effect + ONLY cubic terms ──
  Expected `round(mean(data$Y), 3)` to equal `-1.856`.
  Differences:
    `actual`: -1.8510
  `expected`: -1.8560
  
  ── Failure ('test_node_lmer.r:233:3'): multiple random effects ─────────────────
  Expected `round(mean(data$Y), 3)` to equal `-2.178`.
  Differences:
    `actual`: -2.1790
  `expected`: -2.1780
  
  ── Failure ('test_node_lmer.r:266:3'): with random effects and random slopes ───
  Expected `round(mean(data$Y), 3)` to equal `-1.979`.
  Differences:
    `actual`: -1.9740
  `expected`: -1.9790
  
  ── Failure ('test_node_lmer.r:294:3'): mixed model term with + in it ───────────
  Expected `round(mean(data$Y), 3)` to equal `-2.361`.
  Differences:
    `actual`: -2.3650
  `expected`: -2.3610
  
  ── Failure ('test_node_lmer.r:308:3'): works with function input ───────────────
  Expected `round(mean(data$Y), 3)` to equal `-2.361`.
  Differences:
    `actual`: -2.3650
  `expected`: -2.3610
  
  ── Failure ('test_node_lmer.r:363:3'): random effects with net() syntax ────────
  Expected `round(mean(data$Y), 3)` to equal `-5.3`.
  Differences:
    `actual`: -5.2990
  `expected`: -5.3000
  
  ── Failure ('test_node_lmer.r:387:3'): simple random effect with non-default link ──
  Expected `round(mean(data$Y), 3)` to equal `-1.995`.
  Differences:
    `actual`: -1.9900
  `expected`: -1.9950
  
  
  [ FAIL 12 | WARN 14 | SKIP 56 | PASS 1026 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [31s/36s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/simDAG.Rcheck/00check.log’
for details.

      133.48 real        92.53 user        13.83 sys