* using log directory ‘/Users/ripley/R/packages/tests-devel/scorematchingad.Rcheck’
* using R Under development (unstable) (2024-06-13 r86735)
* using platform: aarch64-apple-darwin23.5.0
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.20.10)
    GNU Fortran (GCC) 14.1.0
* running under: macOS Sonoma 14.5
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘scorematchingad/DESCRIPTION’ ... OK
* this is package ‘scorematchingad’ version ‘0.0.60’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scorematchingad’ can be installed ... [32s/31s] OK
* used C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.20.10)’
* used SDK: ‘MacOSX14.2.sdk’
* checking installed package size ... NOTE
  installed size is  5.3Mb
  sub-directories of 1Mb or more:
    include   4.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [43s/44s]
 [43s/44s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("scorematchingad")
  Loading required package: scorematchingad
  [ FAIL 1 | WARN 1 | SKIP 21 | PASS 396 ]
  
  ══ Skipped tests (21) ══════════════════════════════════════════════════════════
  • C++ assert errors not yet translated to R (1): 'test-tapell.R:40:3'
  • Fixing many of the elements doesn't improve smdbjgrad (1): 'test-FB.R:117:3'
  • Hardcoded and closed methods both fail on this. But not on the microbiome
    data (1): 'test-cppad_closed.R:60:3'
  • On CRAN (16): 'test-Bingham.R:76:3', 'test-Bingham.R:97:3', 'test-FB.R:48:3',
    'test-FB.R:139:3', 'test-Windham-Microdata.R:1:1', 'test-Windham.R:2:3',
    'test-closed-dirichlet.R:1:1', 'test-closed-ppi-Ralr.R:2:3',
    'test-closed-ppi-sphere-simplex.R:171:3', 'test-customll.R:4:3',
    'test-gengamma_alr.R:25:3', 'test-ppi-difficultAL.R:1:1',
    'test-ppi-microdata.R:18:3', 'test-ppi-microdata.R:72:3',
    'test-ppi_mmmm.R:1:1', 'test-rppi.R:10:3'
  • Only for research. (1): 'test-FB.R:97:3'
  • Taping customll not available on this system (1): 'test-customll.R:10:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-Bingham.R:144:3'): Bingham methods match for simulated weights, ignoring SE, which shouldn't match ──
  sim1$est (`actual`) not equal to dir1$est (`expected`).
  
  actual$G vs expected$G
                          [,1]        [,2]        [,3]       [,4]
  - actual$G[1, ]   -0.4748930  0.80655982 -0.20538267  0.2859298
  + expected$G[1, ] -0.4748930  0.80655982  0.20538267 -0.2859298
  - actual$G[2, ]   -0.5678594 -0.21321235  0.76700588  0.2092324
  + expected$G[2, ] -0.5678594 -0.21321235 -0.76700588 -0.2092324
  - actual$G[3, ]   -0.5297893 -0.54721249 -0.60654509  0.2280019
  + expected$G[3, ] -0.5297893 -0.54721249  0.60654509 -0.2280019
  - actual$G[4, ]   -0.4139271  0.06752955 -0.04028635 -0.9069075
  + expected$G[4, ] -0.4139271  0.06752955  0.04028635  0.9069075
  
  [ FAIL 1 | WARN 1 | SKIP 21 | PASS 396 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/Users/ripley/R/packages/tests-devel/scorematchingad.Rcheck/00check.log’
for details.

       97.70 real        90.56 user         5.47 sys