* using log directory ‘/Users/ripley/R/packages/tests-devel/rppo.Rcheck’ * using R Under development (unstable) (2021-06-02 r80446) * using platform: aarch64-apple-darwin20.5.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘rppo/DESCRIPTION’ ... OK * this is package ‘rppo’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rppo’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rppo) > > test_check("rppo") ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure (test-all.R:71:5): Check that PPO term fetching works ─────────────── numPresentClasses > 50 is not TRUE `actual`: `expected`: TRUE ── Failure (test-all.R:72:5): Check that PPO term fetching works ─────────────── numAbsentClasses > 50 is not TRUE `actual`: `expected`: TRUE ── Failure (test-all.R:74:5): Check that PPO term fetching works ─────────────── numAllClasses == (numPresentClasses + numAbsentClasses) is not TRUE `actual`: `expected`: TRUE [ FAIL 3 | WARN 0 | SKIP 0 | PASS 2 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... WARNING Error(s) in re-building vignettes: --- re-building ‘rppo-vignette.Rmd’ using knitr Quitting from lines 30-33 (rppo-vignette.Rmd) Error: processing vignette 'rppo-vignette.Rmd' failed with diagnostics: incorrect number of dimensions --- failed re-building ‘rppo-vignette.Rmd’ SUMMARY: processing the following file failed: ‘rppo-vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING See ‘/Users/ripley/R/packages/tests-devel/rppo.Rcheck/00check.log’ for details. 23.49 real 15.02 user 3.84 sys